Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G47670 509 / 4e-177 Transmembrane amino acid transporter family protein (.1) AT4G35180 328 / 7e-107 LHT7 LYS/HIS transporter 7 (.1) AT1G24400 264 / 1e-82 ATLHT2, AATL2, LHT2 ARABIDOPSIS LYSINE HISTIDINE TRANSPORTER 2, AMINO ACID TRANSPORTER-LIKE PROTEIN 2, lysine histidine transporter 2 (.1) AT1G67640 253 / 2e-78 Transmembrane amino acid transporter family protein (.1) AT5G40780 236 / 6e-72 LHT1, LTH1 lysine histidine transporter 1 (.1.2) AT1G61270 230 / 2e-69 Transmembrane amino acid transporter family protein (.1) AT1G25530 227 / 2e-68 Transmembrane amino acid transporter family protein (.1) AT3G01760 227 / 3e-68 Transmembrane amino acid transporter family protein (.1) AT1G48640 227 / 3e-68 Transmembrane amino acid transporter family protein (.1) AT1G71680 210 / 5e-62 Transmembrane amino acid transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G181200 [exp] 932 / 0 AT1G47670 504 / 3e-175 Transmembrane amino acid transporter family protein (.1) Potri.002G012900 [exp] 546 / 0 AT1G47670 577 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.014G036500 [exp] 509 / 3e-177 AT1G47670 922 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.004G181100 [exp] 447 / 5e-153 AT1G47670 384 / 2e-128 Transmembrane amino acid transporter family protein (.1) Potri.004G181000 [exp] 426 / 1e-145 AT1G47670 405 / 5e-138 Transmembrane amino acid transporter family protein (.1) Potri.001G335300 [exp] 256 / 1e-79 AT5G40780 752 / 0.0 lysine histidine transporter 1 (.1.2) Potri.010G128300 [exp] 246 / 9e-76 AT1G25530 687 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.008G118000 [exp] 242 / 3e-74 AT1G25530 677 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.008G179000 [exp] 235 / 2e-71 AT1G24400 654 / 0.0 ARABIDOPSIS LYSINE HISTIDINE TRANSPORTER 2, AMINO ACID TRANSPORTER-LIKE PROTEIN 2, lysine histidine transporter 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003338 [exp] 632 / 0 AT1G47670 565 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10025113 [exp] 625 / 0 AT1G47670 529 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10023971 [exp] 625 / 0 AT1G47670 526 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10032751 [exp] 516 / 9e-180 AT1G47670 922 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10011668 [exp] 513 / 1e-178 AT1G47670 918 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10015997 [exp] 415 / 2e-140 AT1G47670 450 / 2e-154 Transmembrane amino acid transporter family protein (.1) Lus10022642 [exp] 381 / 2e-127 AT4G35180 431 / 7e-148 LYS/HIS transporter 7 (.1) Lus10003339 [exp] 378 / 4e-126 AT1G47670 410 / 9e-140 Transmembrane amino acid transporter family protein (.1) Lus10022641 [exp] 315 / 2e-103 AT1G47670 302 / 4e-99 Transmembrane amino acid transporter family protein (.1) Lus10041581 [exp] 262 / 1e-81 AT5G40780 798 / 0.0 lysine histidine transporter 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [poplar] [flax] APC PF01490 [poplar] [flax] Aa_trans Transmembrane amino acid transporter protein
Representative CDS sequence Show only first row Show all	>Potri.009G140800.1 pacid=42771191 polypeptide=Potri.009G140800.1.p locus=Potri.009G140800 ID=Potri.009G140800.1.v4.1 annot-version=v4.1 ATGGGTGAAGTTGTTGATGCAAACTCTACTCCCGTGACACCAAGGCCTAATGTAAACTCTACTCCTGTAACACCAAGGCCAGCCTCAGTGTCACCAACGC CACCGATATCGGCTCCTCCGTCGCAATTTCATTCGCCGTCGTTGTCTAGATCACCTTTGCTCACACCTGATCATATTGTTCCAAGCAAAACTCCAAGGAA CTCAACCCCAAGAAATGCAACCCCAAGACTTAGAACTCCTCGCTTTATGACCCCTTTAGGTAGTCCTCTTAGAAGGGCTCTCCAACTCACAAAACTTGAC CCTCAAGATGCTTGGCTTCCAATTACTGAGTCCCGAAATGGAAACGCATGGTATGCAGCGTTTCATTGCCTTTGCTCTGGCATTGGTTTTCAAGCACTCG TGCTCCCTGTTTCCTTCACTGTCCTTGGTTGGGCATGGGGCATCATAGCCTTGACAGTTGCATTCGCATGGCAGCTTTACACTTTTTATTTACTTGTGCA ACTACATGAAAACACCGAGACTGGCATTCGTTACAGCAGATATCTTCAAATTATGAGTGCAAATTTCGGTGAGAAGAAAGCAAAGTGGCTAGGCCTATTT CCAATCTTGTACCTATCAATAGGTACATGTGTGGCTCTAAACATAATCGGAGGATCAACATCAAAATTATTTTTCCAGACTGTATGCGGTCAATCATGCA CAGTCAAAACATTAACACCAGTAGAATGGTACTTGGTGTTTGCGAGCGCTGCAGTTCTTCTGTCTCAGCTACCAAACTTGAACTCAATTGCTGGTGTATC ACTTATTGGATCCATCACTGCTGTCGTGTATTGCACAATTATGTGGATGGTTTCTGTTAACAAGGATAGGTTGCCTGGCATAACTTACAAGCCAGTTCGT GGACCAAAGGAGGTTGACAGGCTCTTTGAAGTTCTTAATTCACTCGGGATCATTGCTTTTGCATTTAGAGGTCACAATCTCGTACTTGAGATCCAGGCTA CTATGCCCTCGAGTGAGAAGCATCCCTCCCGTGTGCCGATGTGGAAGGGTGCCAAGGCTGCTTATGCAGTTATTGCAGCATGTTTATTCCCCCTTGCAAT TGGAGGCTTTTGGGCTTACGGCCAAAGGATACCAAAAAATGGTGGCTTGCAATCAGCCTTCTACGCGTACCGAAGGAATGACACCTCGGAATTTATCATG GGACTTGTTAGTTTACTTATCATAATAAATGCTCTCAGCTCATTCCAGATCTATGCCATGCCAATGTTTGATGAGTTGGAGTCGATTTTCACCAAGAGGA TGAAGAAGCCATGCCAATGGTGGCTCCGAATAATCCTGAGGGCATTTTTCGGATACGGGGTCTTCTTTTTGGCCGTCGCAATCCCGTCTATCGGGAGTGT GGGTGGTCTGGTCGGAGGAATATCATTGCCGGTCACATTGGCTTACCCTTGCTTCATGTGGCTTAGGATGAAGAAGCCAAAGAAGTATGGCAAGATGTGG TACCTTAATTGGAGCCTGGGAATCACTGGTTTGATTCTGAGCGTGTCTTTTATGGCTGCCGGAGTATATGTTATAAAAGAGAATGACAGTAAATTTGAGT GGTTCAAGCCCAAGTAA
AA sequence Show only first row Show all	>Potri.009G140800.1 pacid=42771191 polypeptide=Potri.009G140800.1.p locus=Potri.009G140800 ID=Potri.009G140800.1.v4.1 annot-version=v4.1 MGEVVDANSTPVTPRPNVNSTPVTPRPASVSPTPPISAPPSQFHSPSLSRSPLLTPDHIVPSKTPRNSTPRNATPRLRTPRFMTPLGSPLRRALQLTKLD PQDAWLPITESRNGNAWYAAFHCLCSGIGFQALVLPVSFTVLGWAWGIIALTVAFAWQLYTFYLLVQLHENTETGIRYSRYLQIMSANFGEKKAKWLGLF PILYLSIGTCVALNIIGGSTSKLFFQTVCGQSCTVKTLTPVEWYLVFASAAVLLSQLPNLNSIAGVSLIGSITAVVYCTIMWMVSVNKDRLPGITYKPVR GPKEVDRLFEVLNSLGIIAFAFRGHNLVLEIQATMPSSEKHPSRVPMWKGAKAAYAVIAACLFPLAIGGFWAYGQRIPKNGGLQSAFYAYRRNDTSEFIM GLVSLLIIINALSSFQIYAMPMFDELESIFTKRMKKPCQWWLRIILRAFFGYGVFFLAVAIPSIGSVGGLVGGISLPVTLAYPCFMWLRMKKPKKYGKMW YLNWSLGITGLILSVSFMAAGVYVIKENDSKFEWFKPK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G47670			Transmembrane amino acid trans...		Potri.009G140800 [exp]	0	1
AT2G29120		ATGLR2.7	GLUTAMATE RECEPTOR 2.7, gluta...		Potri.006G268700 [exp]	1.73	0.9691
AT1G66920			Protein kinase superfamily pro...		Potri.017G116955 [exp]	3.87	0.9373
AT1G76360			Protein kinase superfamily pro...		Potri.002G009400 [exp]	6.92	0.9474
AT3G21790			UDP-Glycosyltransferase superf...		Potri.006G007200 [exp]	8.30	0.9097
AT2G29110		ATGLR2.8	glutamate receptor 2.8 (.1)		Potri.006G270400 [exp]	8.36	0.9335
AT3G11820		PEN1, AT-SYR1, ...	PENETRATION1, SYNTAXIN RELATED...		Potri.016G068600 [exp]	8.48	0.9261	Pt-SYP121.1
AT2G29110		ATGLR2.8	glutamate receptor 2.8 (.1)		Potri.006G268900 [exp]	9.94	0.9409
					Potri.002G247600 [exp]	10.39	0.9404
AT4G23220		CRK14	cysteine-rich RLK (RECEPTOR-li...		Potri.011G029201 [exp]	12.64	0.9166
AT3G21790			UDP-Glycosyltransferase superf...		Potri.016G016500 [exp]	15.65	0.8998

Compare expression of checked genes

Potri.009G140800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.