Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27810 903 / 0 ATNAT12 ARABIDOPSIS NUCLEOBASE-ASCORBATE TRANSPORTER 12, nucleobase-ascorbate transporter 12 (.1.2.3) AT4G38050 581 / 0 Xanthine/uracil permease family protein (.1) AT2G34190 320 / 5e-101 Xanthine/uracil permease family protein (.1) AT2G05760 319 / 8e-101 Xanthine/uracil permease family protein (.1) AT1G60030 299 / 7e-93 ATNAT7 ARABIDOPSIS NUCLEOBASE-ASCORBATE TRANSPORTER 7, nucleobase-ascorbate transporter 7 (.1) AT5G62890 293 / 9e-91 Xanthine/uracil permease family protein (.1.2.3.4) AT5G49990 290 / 2e-89 Xanthine/uracil permease family protein (.1) AT1G10540 274 / 2e-83 ATNAT8 nucleobase-ascorbate transporter 8 (.1) AT2G26510 268 / 3e-81 PDE135 pigment defective embryo 135, Xanthine/uracil permease family protein (.1.2) AT1G49960 263 / 1e-79 Xanthine/uracil permease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G187900 [exp] 1141 / 0 AT2G27810 880 / 0.0 ARABIDOPSIS NUCLEOBASE-ASCORBATE TRANSPORTER 12, nucleobase-ascorbate transporter 12 (.1.2.3) Potri.007G011400 [exp] 584 / 0 AT4G38050 834 / 0.0 Xanthine/uracil permease family protein (.1) Potri.014G157800 [exp] 322 / 8e-102 AT2G05760 930 / 0.0 Xanthine/uracil permease family protein (.1) Potri.011G068200 [exp] 318 / 2e-100 AT2G34190 928 / 0.0 Xanthine/uracil permease family protein (.1) Potri.004G058800 [exp] 316 / 1e-99 AT2G34190 927 / 0.0 Xanthine/uracil permease family protein (.1) Potri.012G077400 [exp] 288 / 5e-89 AT5G62890 914 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4) Potri.008G146400 [exp] 286 / 3e-88 AT1G60030 881 / 0.0 ARABIDOPSIS NUCLEOBASE-ASCORBATE TRANSPORTER 7, nucleobase-ascorbate transporter 7 (.1) Potri.015G072600 [exp] 285 / 1e-87 AT5G62890 908 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4) Potri.010G095500 [exp] 283 / 8e-87 AT1G60030 869 / 0.0 ARABIDOPSIS NUCLEOBASE-ASCORBATE TRANSPORTER 7, nucleobase-ascorbate transporter 7 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020551 [exp] 896 / 0 AT2G27810 891 / 0.0 ARABIDOPSIS NUCLEOBASE-ASCORBATE TRANSPORTER 12, nucleobase-ascorbate transporter 12 (.1.2.3) Lus10009401 [exp] 884 / 0 AT2G27810 888 / 0.0 ARABIDOPSIS NUCLEOBASE-ASCORBATE TRANSPORTER 12, nucleobase-ascorbate transporter 12 (.1.2.3) Lus10025716 [exp] 612 / 0 AT4G38050 824 / 0.0 Xanthine/uracil permease family protein (.1) Lus10035946 [exp] 612 / 0 AT4G38050 825 / 0.0 Xanthine/uracil permease family protein (.1) Lus10029238 [exp] 313 / 3e-98 AT2G34190 926 / 0.0 Xanthine/uracil permease family protein (.1) Lus10030014 [exp] 308 / 2e-96 AT2G05760 927 / 0.0 Xanthine/uracil permease family protein (.1) Lus10010707 [exp] 283 / 8e-87 AT5G62890 916 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4) Lus10029191 [exp] 282 / 1e-86 AT5G62890 914 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4) Lus10004228 [exp] 276 / 2e-84 AT5G62890 972 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4) Lus10002787 [exp] 270 / 7e-82 AT2G26510 748 / 0.0 pigment defective embryo 135, Xanthine/uracil permease family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [poplar] [flax] APC PF00860 [poplar] [flax] Xan_ur_permease Permease family
Representative CDS sequence Show only first row Show all	>Potri.009G148600.1 pacid=42772107 polypeptide=Potri.009G148600.1.p locus=Potri.009G148600 ID=Potri.009G148600.1.v4.1 annot-version=v4.1 ATGTCTAACTCCGACCCGAAAGCCCGACCCATACCAGGGAAAAGGCCACCGGCTCCGGAATCTGCCGCAATGCCGCCGTCTTCGTGGGCTAAAAAAACTG GTTTCAGGCCCAAATTTTCTGGTGAGACCAATGCAAGTGATTCTGGACAGATTTCACTCCCTCCGAGGCCAAAAGAGCAACGGGATGCCCAACCGGATCT TGAAGCGGGTCGGGTCAAGGCAACACCACCACAGCCACTACCAGTGCCGCCACCGCCTGCAGTGAACGGGGCTGACACGGTGGTGGCTTTACCATCAGAG AATAAGGATCAGACGGTGGTGAAGAGGAGGAGGGACTCTGATGGTGGTAGTGGGGGAGCAAAGAAGGATGGTTCCGGTCACGGGGTAAATGGGGCGGGTA CTAATGGGCCACCGTCGGGACCGAGAAGAGCAGCGGCGAGGAACGAGGAAGTGATTGACGTGGAGGATGATGGCTTTGCTGGAGGGAGACACACACACAT GAAGTATGAGTTAAGAGACACTCCCGGTCTTGTTCCCATTGGTCTATATGGGTTCCAGCATTACCTTTCAATGTTAGGTTCATTGATTCTCATTCCACTT GTCGTAGTTCCTGCAATGGGTGGCACTTATGAGGATACTTCAACGGTGGTGTCAACAGTGCTCTTTGTTTCAGGAGTCACCACGCTCTTGCATACATCAT TTGGGTCAAGATTGCCTCTGATACAAGGCCCATCATTTGTTTACCTTGCTCCAGCACTGGCAATAATCAATTCCCCAGAGTTTCAAGGACTAAATGGAAA TAATTTCAAGCATATAATGAAGGAGCTACAAGGAGCTATCATTATAGCTTCAGCTTTTCAAACAATACTTGGATATAGTGGACTGATGTCAGTCCTTTTG AGGTTGATCAATCCAGTGGTTGTTGCCCCAACTATTGCTGCTGTTGGACTTTCTTTTTATAGTTATGGTTTTCCACGAGTTGGTACCTGTCTTGAGATTG GTGTGGTGCAGATATTGCTGGTTATTATGTTTTCTCTTTACCTGCGTAAGATATCTGTTTTTGGTCATCGCATATTTCTAATTTATGCGGTTCCATTGGG TCTAGCAATCACATGGGCGGCTGCTTTCCTTCTTACTGAAGCAGGAGTCTATAGTTACAAAGGTTGTGATGCAAACGTTCCAGCATCAAACATTATATCT GACCACTGCAGAAAGCATGTTTCCAGGATAAAGCACTGTCGAGTTGATACTTCCCATGCACTGAAATCTTCCCCATGGTTTAGGTTTCCTTATCCATTAC AATGGGGTACTCCTGTTTTTGAGTGGAAAATGGCTCTCGTTATGTGCGCGGTGTCCATCATCTCATCTGTAGATTCGGTTGGCTCATATCATGCATCGTC ATTGTTGGCGGCCTCTAGGCCTCCAACCCCAGGGGTTGTTAGTCGGGGGATTGGTCTTGAAGGCCTTTGTAGTGTCTTGGCTGGTCTATGGGGTACTGGA ACTGGTTCTACTACTATAACTGAGAATGTGCACACTATTGCTGTGACTAAAATGGGGAGCCGCAGAGCAGTTGAATTAGGTGCCTGTGCTTTGATCCTCT TATCCCTTATAGGTAAAGTTGGAGGATTTATTGCCTCAATTCCTGAAGTCATGGTTGCTGCTCTCCTTTGCTTCATGTGGGCAATGCTTGCAGCATTGGG ATTATCAAACCTGCGTTATAGTGAGGCGGGAAGCTCCCGGAATATCATCATAGTTGGTTTATCATTGTTTTTCTCCCTTTCAGTACCATCATACTTTCAG CAATATGGCATCTCTCCAAATACAAACTTGTCTGTCCCAAGTTATTTACAGCCATACATTGTGGCCACACATGGACCATTCCGCAGCAAATATGGAGGGT TGAACTATTTTTTGAACACGGTACTATCCTTAAATATGGTGATCGCGTTCCTTGTTGCTGTTATCCTGGACAACACTGTGCCTGGCAGTAAACAAGAGCG CGGAGTCTATGTATGGTCTGAAACCGAGGTAGCAAGAAGGGAGCCTGCCATTACGAAAGACTATGAATTGCCCTTCAGAGTTGGCCGGATTTTCAGATGG GTAAAATGGGTTGGGCTGTGA
AA sequence Show only first row Show all	>Potri.009G148600.1 pacid=42772107 polypeptide=Potri.009G148600.1.p locus=Potri.009G148600 ID=Potri.009G148600.1.v4.1 annot-version=v4.1 MSNSDPKARPIPGKRPPAPESAAMPPSSWAKKTGFRPKFSGETNASDSGQISLPPRPKEQRDAQPDLEAGRVKATPPQPLPVPPPPAVNGADTVVALPSE NKDQTVVKRRRDSDGGSGGAKKDGSGHGVNGAGTNGPPSGPRRAAARNEEVIDVEDDGFAGGRHTHMKYELRDTPGLVPIGLYGFQHYLSMLGSLILIPL VVVPAMGGTYEDTSTVVSTVLFVSGVTTLLHTSFGSRLPLIQGPSFVYLAPALAIINSPEFQGLNGNNFKHIMKELQGAIIIASAFQTILGYSGLMSVLL RLINPVVVAPTIAAVGLSFYSYGFPRVGTCLEIGVVQILLVIMFSLYLRKISVFGHRIFLIYAVPLGLAITWAAAFLLTEAGVYSYKGCDANVPASNIIS DHCRKHVSRIKHCRVDTSHALKSSPWFRFPYPLQWGTPVFEWKMALVMCAVSIISSVDSVGSYHASSLLAASRPPTPGVVSRGIGLEGLCSVLAGLWGTG TGSTTITENVHTIAVTKMGSRRAVELGACALILLSLIGKVGGFIASIPEVMVAALLCFMWAMLAALGLSNLRYSEAGSSRNIIIVGLSLFFSLSVPSYFQ QYGISPNTNLSVPSYLQPYIVATHGPFRSKYGGLNYFLNTVLSLNMVIAFLVAVILDNTVPGSKQERGVYVWSETEVARREPAITKDYELPFRVGRIFRW VKWVGL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G27810		ATNAT12	ARABIDOPSIS NUCLEOBASE-ASCORBA...		Potri.009G148600 [exp]	0	1
AT2G19880			Nucleotide-diphospho-sugar tra...		Potri.018G087700 [exp]	1.00	0.8470
AT1G63850			BTB/POZ domain-containing prot...		Potri.001G100900 [exp]	9.32	0.7933
AT3G58100		PDCB5	plasmodesmata callose-binding ...		Potri.019G091500 [exp]	9.69	0.7322
AT1G53000		AtCKS, KDSB	CMP-KDO synthetase, Nucleotide...		Potri.011G120100 [exp]	12.12	0.7749
AT2G27810		ATNAT12	ARABIDOPSIS NUCLEOBASE-ASCORBA...		Potri.004G187900 [exp]	14.14	0.7429
AT5G55730		FLA1	FASCICLIN-like arabinogalactan...		Potri.001G367900 [exp]	15.23	0.7288
AT3G08600			Protein of unknown function (D...		Potri.006G111700 [exp]	18.49	0.8044
AT3G07210			unknown protein		Potri.002G245700 [exp]	18.70	0.7781
AT4G34160		CYCD3;1	CYCLIN D3;1 (.1)		Potri.009G097800 [exp]	19.59	0.7196	CYCD3.2
AT1G23030		PUB11	ARM repeat superfamily protein...		Potri.010G113900 [exp]	25.45	0.7421

Compare expression of checked genes

Potri.009G148600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.