Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08230 573 / 0 ATGAT1 L-GAMMA-AMINOBUTYRIC ACID TRANSPORTER 1, Transmembrane amino acid transporter family protein (.2) AT5G41800 407 / 2e-139 Transmembrane amino acid transporter family protein (.1) AT5G40780 192 / 4e-56 LHT1, LTH1 lysine histidine transporter 1 (.1.2) AT1G48640 183 / 2e-52 Transmembrane amino acid transporter family protein (.1) AT1G61270 172 / 1e-48 Transmembrane amino acid transporter family protein (.1) AT2G39890 169 / 2e-47 ATPROT1, ProT1 proline transporter 1 (.1.2) AT2G36590 166 / 2e-46 ATPROT3, ProT3 proline transporter 3 (.1) AT3G55740 165 / 6e-46 ATPROT2, ProT2 proline transporter 2 (.1.2) AT1G24400 164 / 2e-45 ATLHT2, AATL2, LHT2 ARABIDOPSIS LYSINE HISTIDINE TRANSPORTER 2, AMINO ACID TRANSPORTER-LIKE PROTEIN 2, lysine histidine transporter 2 (.1) AT3G01760 159 / 1e-43 Transmembrane amino acid transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G026600 [exp] 620 / 0 AT1G08230 509 / 2e-179 L-GAMMA-AMINOBUTYRIC ACID TRANSPORTER 1, Transmembrane amino acid transporter family protein (.2) Potri.008G026700 [exp] 581 / 0 AT1G08230 490 / 7e-172 L-GAMMA-AMINOBUTYRIC ACID TRANSPORTER 1, Transmembrane amino acid transporter family protein (.2) Potri.001G093600 [exp] 424 / 4e-146 AT5G41800 729 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.003G138100 [exp] 420 / 3e-144 AT5G41800 729 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.005G219300 [exp] 247 / 6e-77 AT1G08230 226 / 7e-69 L-GAMMA-AMINOBUTYRIC ACID TRANSPORTER 1, Transmembrane amino acid transporter family protein (.2) Potri.008G179000 [exp] 176 / 3e-50 AT1G24400 654 / 0.0 ARABIDOPSIS LYSINE HISTIDINE TRANSPORTER 2, AMINO ACID TRANSPORTER-LIKE PROTEIN 2, lysine histidine transporter 2 (.1) Potri.010G055800 [exp] 175 / 1e-49 AT5G40780 670 / 0.0 lysine histidine transporter 1 (.1.2) Potri.001G335200 [exp] 172 / 1e-48 AT5G40780 697 / 0.0 lysine histidine transporter 1 (.1.2) Potri.015G091600 [exp] 170 / 7e-48 AT5G40780 610 / 0.0 lysine histidine transporter 1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038639 [exp] 581 / 0 AT1G08230 523 / 0.0 L-GAMMA-AMINOBUTYRIC ACID TRANSPORTER 1, Transmembrane amino acid transporter family protein (.2) Lus10009386 [exp] 553 / 0 AT1G08230 453 / 4e-157 L-GAMMA-AMINOBUTYRIC ACID TRANSPORTER 1, Transmembrane amino acid transporter family protein (.2) Lus10003903 [exp] 382 / 1e-129 AT5G41800 695 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10037913 [exp] 367 / 6e-124 AT1G08230 305 / 9e-100 L-GAMMA-AMINOBUTYRIC ACID TRANSPORTER 1, Transmembrane amino acid transporter family protein (.2) Lus10038640 [exp] 232 / 6e-72 AT1G08230 208 / 7e-63 L-GAMMA-AMINOBUTYRIC ACID TRANSPORTER 1, Transmembrane amino acid transporter family protein (.2) Lus10037914 [exp] 180 / 8e-52 AT1G08230 112 / 6e-31 L-GAMMA-AMINOBUTYRIC ACID TRANSPORTER 1, Transmembrane amino acid transporter family protein (.2) Lus10022329 [exp] 173 / 6e-49 AT5G40780 798 / 0.0 lysine histidine transporter 1 (.1.2) Lus10041581 [exp] 173 / 7e-49 AT5G40780 798 / 0.0 lysine histidine transporter 1 (.1.2) Lus10041580 [exp] 171 / 4e-48 AT5G40780 652 / 0.0 lysine histidine transporter 1 (.1.2) Lus10014605 [exp] 169 / 3e-47 AT5G40780 744 / 0.0 lysine histidine transporter 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [poplar] [flax] APC PF01490 [poplar] [flax] Aa_trans Transmembrane amino acid transporter protein
Representative CDS sequence Show only first row Show all	>Potri.009G149900.1 pacid=42770991 polypeptide=Potri.009G149900.1.p locus=Potri.009G149900 ID=Potri.009G149900.1.v4.1 annot-version=v4.1 ATGGGCGCTGTTGCAGCTCATGGAGAGGATGGCAAGGTCTCACAGCAAGGAGCCGATCACCAGCTAAAGGACCTTGATGCCGGTGCCCTTTTTGTTCTCA AATCCAAAGGATCATGGCTGCATTGTGGTTACCACCTAACAACATCAATTGTCGCACCACCTCTTCTTAGTCTGCCCTTCGCTTTCACATTTCTTGGGTG GGCGGCCGGAGTTGCATTCTTGCTGATCGGAGCTCTGGTCACTTTCTATTCATACAACTTGTTGTCTTTAGTTCTTGAACACCATGCTCAAAAGGGTAAT CGCCAACTTCGGTTCAGGGATATGGCCAACCAAATACTGGGGCGAAAATGGGGCAAGTATTTTGTGGGTCCAATTCAATTCATGGTGTGCTATGGTGCTG TTGTTGCTTGTACTCTTCTTGGAGGACAATGCATGAAGACAATTTATTTAATGTCAAAGCCAGAAGGGCCAATGAAGCTTTATGAATTTATAATCATATT TGGGTGCTTAATGTTGATATTAGCTCAAATCCCATCTTTTCATTCGTTAAGGAACATCAACTTGGTATCCCTGGTTCTAACCCTAGCTTATAGTGCCTGT GCCACTGGTGGTTCAATTCATATTGGAACTTCATTCAAGGAACCAAAGGACTATTCTCTGCATGGAGACACACAAGATCGCCTTTTCGGTATCTTTAATG CCATTGCTATCATTGCCACATCATACGGCAATGGGATCATCCCAGAAATCCAGGCAACAGTAGCACCGCCTGTGAAAGGGAAGATGTTCAAGGGATTATG TATTTGCTATACTGTACTTTCTCTTACCTTCTTTAGTGTTGCCATCTCTGGTTATTGGGCATTTGGCAACAATTCTGAACCTCTAGTAATTAGCAACTTC TTAGCTGATGGGCAAACTTTGGTGCCTAAATGGTTTGTTTTGATGGTCAACATCTTCATCATTCTCCAACTATCAGCAGTAGCTGTGGTTTACTTGCAGC CTACAAATGAAGTACTCGAAAACACCTTTTCAGACCCGAAGCGAAAAGAATTCTCTGCTCGAAATGTAATCCCCAGAGCAGTCTCAAGGTCAATGTCTGT CATCATAGCAACTACAATAGCAGCAATGCTTCCATTCTTTGGAGATATCAATTCATTGATTGGTGCTTTTGGTTTCATCCCTCTAGACTTTGTCTTGCCT GTTGTTTTCTTCAACTTGACATTCAAGCCATCGAAGAGGAGCATTGTTTTCTGGTTGAATGTCACTATTGCAGTAGTTTTCTCAGCAGTAGGGGTTATAG CAGCGGTTGCAGCGGTAAGACAAATAGGTCTTGATGCCAAAACTTATAGGTTATTTGCTAATGTTTGA
AA sequence Show only first row Show all	>Potri.009G149900.1 pacid=42770991 polypeptide=Potri.009G149900.1.p locus=Potri.009G149900 ID=Potri.009G149900.1.v4.1 annot-version=v4.1 MGAVAAHGEDGKVSQQGADHQLKDLDAGALFVLKSKGSWLHCGYHLTTSIVAPPLLSLPFAFTFLGWAAGVAFLLIGALVTFYSYNLLSLVLEHHAQKGN RQLRFRDMANQILGRKWGKYFVGPIQFMVCYGAVVACTLLGGQCMKTIYLMSKPEGPMKLYEFIIIFGCLMLILAQIPSFHSLRNINLVSLVLTLAYSAC ATGGSIHIGTSFKEPKDYSLHGDTQDRLFGIFNAIAIIATSYGNGIIPEIQATVAPPVKGKMFKGLCICYTVLSLTFFSVAISGYWAFGNNSEPLVISNF LADGQTLVPKWFVLMVNIFIILQLSAVAVVYLQPTNEVLENTFSDPKRKEFSARNVIPRAVSRSMSVIIATTIAAMLPFFGDINSLIGAFGFIPLDFVLP VVFFNLTFKPSKRSIVFWLNVTIAVVFSAVGVIAAVAAVRQIGLDAKTYRLFANV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G08230		ATGAT1	L-GAMMA-AMINOBUTYRIC ACID TRAN...		Potri.009G149900 [exp]	0	1
AT4G11820		FKP1, EMB2778, ...	FLAKY POLLEN 1, hydroxymethylg...		Potri.001G111700 [exp]	1.41	0.8497
AT4G40050			Protein of unknown function (D...		Potri.007G096800 [exp]	5.47	0.8065
AT1G79870			D-isomer specific 2-hydroxyaci...		Potri.013G046150 [exp]	7.61	0.8389
AT5G15080			Protein kinase superfamily pro...		Potri.017G077300 [exp]	8.48	0.8142
AT2G28470		BGAL8	beta-galactosidase 8 (.1.2)		Potri.009G012400 [exp]	9.32	0.7678	BGAL8.1
AT3G09770		LOG2	LOSS OF GDU 2, RING/U-box supe...		Potri.016G089000 [exp]	10.67	0.8248
AT1G62790			Bifunctional inhibitor/lipid-t...		Potri.001G119000 [exp]	12.96	0.7681
AT1G28110		SCPL45	serine carboxypeptidase-like 4...		Potri.016G034600 [exp]	13.41	0.7866
AT2G36840		ACR10	ACT domain repeats 10, ACT-lik...		Potri.011G154600 [exp]	13.41	0.7788
AT3G17860	ZIM	TIFY6B, JAI3, J...	JASMONATE-INSENSITIVE 3, jasmo...		Potri.008G133400 [exp]	14.59	0.7401

Compare expression of checked genes

Potri.009G149900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.