Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	PtrANT3
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38250 583 / 0 Transmembrane amino acid transporter family protein (.1) AT2G42005 575 / 0 Transmembrane amino acid transporter family protein (.1) AT5G65990 490 / 1e-172 Transmembrane amino acid transporter family protein (.1) AT3G11900 230 / 6e-71 ANT1 aromatic and neutral transporter 1 (.1) AT5G15240 103 / 3e-24 Transmembrane amino acid transporter family protein (.1.2) AT2G39130 92 / 5e-20 Transmembrane amino acid transporter family protein (.1) AT3G54830 87 / 3e-18 Transmembrane amino acid transporter family protein (.1) AT5G02170 83 / 5e-17 Transmembrane amino acid transporter family protein (.1.2) AT3G28960 76 / 7e-15 Transmembrane amino acid transporter family protein (.1) AT2G41190 74 / 4e-14 Transmembrane amino acid transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G206800 [exp] 738 / 0 AT2G42005 592 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.005G102300 [exp] 591 / 0 AT4G38250 539 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.016G064500 [exp] 238 / 5e-74 AT3G11900 521 / 0.0 aromatic and neutral transporter 1 (.1) Potri.010G226000 [exp] 97 / 2e-21 AT2G39130 708 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.008G036300 [exp] 85 / 2e-17 AT2G39130 691 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.017G083700 [exp] 76 / 1e-14 AT3G28960 456 / 2e-159 Transmembrane amino acid transporter family protein (.1) Potri.016G100300 [exp] 75 / 3e-14 AT5G02180 587 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.008G086500 [exp] 71 / 3e-13 AT3G28960 411 / 4e-142 Transmembrane amino acid transporter family protein (.1) Potri.017G106300 [exp] 70 / 8e-13 AT3G30390 625 / 0.0 Transmembrane amino acid transporter family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022995 [exp] 626 / 0 AT2G42005 580 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10001390 [exp] 622 / 0 AT2G42005 581 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10026549 [exp] 560 / 0 AT2G42005 548 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10017224 [exp] 217 / 5e-66 AT3G11900 502 / 3e-177 aromatic and neutral transporter 1 (.1) Lus10021089 [exp] 217 / 1e-65 AT3G11900 501 / 2e-176 aromatic and neutral transporter 1 (.1) Lus10013835 [exp] 186 / 1e-57 AT2G42005 178 / 2e-55 Transmembrane amino acid transporter family protein (.1) Lus10005239 [exp] 85 / 2e-17 AT5G15240 509 / 4e-180 Transmembrane amino acid transporter family protein (.1.2) Lus10005099 [exp] 81 / 4e-16 AT3G30390 646 / 0.0 Transmembrane amino acid transporter family protein (.1.2) Lus10034353 [exp] 79 / 1e-15 AT3G30390 655 / 0.0 Transmembrane amino acid transporter family protein (.1.2) Lus10039190 [exp] 77 / 8e-15 AT2G39130 652 / 0.0 Transmembrane amino acid transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [poplar] [flax] APC PF01490 [poplar] [flax] Aa_trans Transmembrane amino acid transporter protein
Representative CDS sequence Show only first row Show all	>Potri.009G167900.1 pacid=42772877 polypeptide=Potri.009G167900.1.p locus=Potri.009G167900 ID=Potri.009G167900.1.v4.1 annot-version=v4.1 ATGGGATTTGGGAGGAAAAAAGCATCCTCATCAGCAAAAACTTTTCCACCGAGAGAAGACACACCTCTCATAGCCAAGTCCACGCCTTTATCATCTCAAT CGAAGACTTTTGCAAATGTCTTCATTGCTATTGTCGGTGCTGGTGTTCTTGGTCTCCCTTATGCTTTCAAACGCACAGGTTGGCTAATGAGTCTTATTAT GCTTTTCTCTGTTGCTGGCTTAACTCATTATTGTATGATGTTGTTAGTCAATACTCGTGGAAAGCTTCAATCTTTTTCTGGTGGATTCTCAAAGATTACC TCTTTTGGTGATGTGGGTTTCACTGTTTGTGGTTCTATTGGGAGGTTTGTTGTTGATGTTATGATTGTCTTGTCACAAGCTGGATTTTGTATTGGTTATT TGATATTCATTGCTAATACTTTGGCTAATCTATTCAATTCGCCATCACCTAATGGCCTGGCTTCTCAAATTCTGGCCCTTTCAATGTCAGCTAAGAGTTG GTATATGTGGGGTTGTTTTCCTTTTCAGTTGGGGTTGAATTCTATTGCAACGTTGACCCATTTGGCTCCTCTGAGTATTTTTGCCGATGTTGTTGATCTT GCTGCCATGGGAGTGGTGATTGTTAAGGATGTTTTTATAATGATGGAAAATAGGGCTGAAGTTAGAGCATTTGGAGGTTTGTCTGTGTTTTTCTATGGGA TGGGTGTGGCTGTTTATGCGTTTGAAGGGATTGGCATGGTTTTGCCAATAGAATCTGAAATGAGAGAGAGGGAAAAGTTTGGGAGAATCCTAGGGCTGAG CATGGGGCTTATTTCAGTGATATATGGAGCTTTTGGCGTGCTGGGTTACTTTGCTTTTGGAAATGATACTCAGGATATTATCACTGCTAATTTAGGGCCT GGACTCATTAGCCTCTTGGTTCAATTGGGTCTTTGTATTAACCTGTTCTTTACATTTCCTTTGATGATGAACCCTGTTTATGAGATACTGGAGAGAAGGT TTTGGGGTGGAAGGTATTGTTTGTGGCTTAGATGGGTATCCGTTTTGTTGGTTACTTTGGTGGCTCTAATGGTGCCGAACTTTGCCGATTTCATGTCCTT GGTGGGGAGTAGTGTATGCTGTGGGCTGGGATTTGTTTTGCCAGCTTTGTTTCACCTGCTCGTGTTCAAGGAGGAGATGAGCTGGAAAGGGTGGAGTATT GATGTAGGGATTGTGGCCTTAGGCCTTGTTCTTGCTGTTTCTGGGACATGGTATGCTCTCATGGAGATCTTTGCTGTCAAGGTATAG
AA sequence Show only first row Show all	>Potri.009G167900.1 pacid=42772877 polypeptide=Potri.009G167900.1.p locus=Potri.009G167900 ID=Potri.009G167900.1.v4.1 annot-version=v4.1 MGFGRKKASSSAKTFPPREDTPLIAKSTPLSSQSKTFANVFIAIVGAGVLGLPYAFKRTGWLMSLIMLFSVAGLTHYCMMLLVNTRGKLQSFSGGFSKIT SFGDVGFTVCGSIGRFVVDVMIVLSQAGFCIGYLIFIANTLANLFNSPSPNGLASQILALSMSAKSWYMWGCFPFQLGLNSIATLTHLAPLSIFADVVDL AAMGVVIVKDVFIMMENRAEVRAFGGLSVFFYGMGVAVYAFEGIGMVLPIESEMREREKFGRILGLSMGLISVIYGAFGVLGYFAFGNDTQDIITANLGP GLISLLVQLGLCINLFFTFPLMMNPVYEILERRFWGGRYCLWLRWVSVLLVTLVALMVPNFADFMSLVGSSVCCGLGFVLPALFHLLVFKEEMSWKGWSI DVGIVALGLVLAVSGTWYALMEIFAVKV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G38250			Transmembrane amino acid trans...		Potri.009G167900 [exp]	0	1	PtrANT3
AT5G39360		EDL2	EID1-like 2 (.1)		Potri.004G125000 [exp]	1.41	0.8654
AT2G39805			Integral membrane Yip1 family ...		Potri.008G060300 [exp]	2.23	0.8692
AT3G17980		AtC2	Arabidopsis thaliana C2 domain...		Potri.004G089500 [exp]	4.00	0.8461
AT1G11090			alpha/beta-Hydrolases superfam...		Potri.011G046500 [exp]	4.58	0.8569
AT2G47115			unknown protein		Potri.002G190200 [exp]	7.21	0.8562
AT3G57870		SCE1A, SCE1, AH...	SUMO CONJUGATING ENZYME 1A, EM...		Potri.014G024950 [exp]	9.00	0.8419
AT2G45760		BAL, BAP2	BON ASSOCIATION PROTEIN 1-LIKE...		Potri.001G108300 [exp]	9.59	0.8116
AT5G14170		CHC1	SWIB/MDM2 domain superfamily p...		Potri.012G096700 [exp]	11.40	0.8510
					Potri.014G144550 [exp]	12.00	0.7962
AT1G79590		ATSYP52, SYP52	syntaxin of plants 52 (.1.2)		Potri.006G032800 [exp]	12.24	0.8490

Compare expression of checked genes

Potri.009G167900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.