Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G17430 590 / 0 Nucleotide-sugar transporter family protein (.1) AT1G48230 555 / 0 nodulin MtN21 /EamA-like transporter family protein (.1) AT2G25520 295 / 5e-98 Drug/metabolite transporter superfamily protein (.1) AT1G53660 293 / 1e-97 nodulin MtN21 /EamA-like transporter family protein (.1) AT4G32390 293 / 4e-97 Nucleotide-sugar transporter family protein (.1) AT5G25400 284 / 8e-94 Nucleotide-sugar transporter family protein (.1) AT5G11230 282 / 6e-93 Nucleotide-sugar transporter family protein (.1) AT3G14410 271 / 7e-89 Nucleotide/sugar transporter family protein (.1) AT1G21870 116 / 2e-29 GONST5 golgi nucleotide sugar transporter 5 (.1) AT5G05820 111 / 1e-27 Nucleotide-sugar transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G214300 [exp] 628 / 0 AT3G17430 569 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.001G394500 [exp] 297 / 5e-99 AT3G14410 496 / 5e-178 Nucleotide/sugar transporter family protein (.1) Potri.006G252500 [exp] 289 / 1e-95 AT4G32390 537 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.018G028900 [exp] 288 / 3e-95 AT4G32390 568 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.002G084500 [exp] 113 / 3e-28 AT1G77610 580 / 0.0 EamA-like transporter family protein (.1) Potri.005G177200 [exp] 107 / 3e-26 AT1G77610 561 / 0.0 EamA-like transporter family protein (.1) Potri.010G194100 [exp] 99 / 2e-23 AT3G11320 572 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.008G063400 [exp] 97 / 1e-22 AT3G11320 566 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.016G043200 [exp] 97 / 2e-22 AT5G04160 512 / 0.0 Nucleotide-sugar transporter family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018339 [exp] 587 / 0 AT3G17430 615 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10017115 [exp] 580 / 0 AT3G17430 593 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10002904 [exp] 301 / 4e-100 AT4G32390 632 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10002023 [exp] 300 / 5e-100 AT4G32390 631 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10016923 [exp] 268 / 3e-87 AT3G14410 496 / 1e-177 Nucleotide/sugar transporter family protein (.1) Lus10025645 [exp] 115 / 5e-29 AT1G21870 563 / 0.0 golgi nucleotide sugar transporter 5 (.1) Lus10042700 [exp] 108 / 2e-26 AT1G77610 602 / 0.0 EamA-like transporter family protein (.1) Lus10028255 [exp] 104 / 4e-25 AT3G11320 523 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10029663 [exp] 105 / 1e-24 AT1G77610 547 / 0.0 EamA-like transporter family protein (.1) Lus10040234 [exp] 101 / 4e-24 AT3G11320 527 / 0.0 Nucleotide-sugar transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [poplar] [flax] DMT PF03151 [poplar] [flax] TPT Triose-phosphate Transporter family
Representative CDS sequence Show only first row Show all	>Potri.010G001700.2 pacid=42797549 polypeptide=Potri.010G001700.2.p locus=Potri.010G001700 ID=Potri.010G001700.2.v4.1 annot-version=v4.1 ATGATGATGGTGAATAAGCCGCTTGTATTGACTTATCTCTACCTTTTGATCTACGTTTTGCTTTCGTCTGGAGTCATTCTGTACAACAAGTGGGTGCTCT CACCAAAATATTTCAACTTTCCATTTCCCATAACACTTACGATGATTCATATGGGGTTTTCAGGAGCTGTAGCCTTTTTCCTTATTCGTGTATTTAAGGT TGTGTCTCCAGTCAAAATGACTTTGGAAATATACATAACCTGTGTTGTGCCAATAAGTGCCTTCTTTGCAGCAAGTCTTTGGTTCGGTAACACTGCTTAC TTGTACATCTCAGTGGCCTTCATTCAGATGCTCAAAGCCCTAATGCCAGTGGCAACTTTTATCATGGCTGTTATGTGTGGTACTGACAAAGGAAGGTGTG ACGTGTTCTCAAACATGTTGCTCGTCAGTGTTGGAGTTGTCATCTCGTCATATGGGGAAATTCATTTTAATGGAGTTGGCACACTTTACCAGGTCACAGG CATCTTTGCAGAAGCTCTTAGGCTGGTTTTAACTCAGGTTCTTTTACAGAAGAAGGGCTTGACTCTAAATCCTATCACCAGCTTATATTACATTGCTCCA TGCAGTTTTGTTTTTCTGTGCGCGCCTTGGTATGTACTGGAGAAGCCTGGGATGGAAGTTTCACAGATTCAGTTCAACTTTTGGATCTTCTTTTCCAATG CTCTCTGTGCCTTAGCCTTGAACTTCTCCATATTCTTGGTAATTGGTAGAACTGGGGCAGTCACCATCAGAGTTGCTGGTGTGCTAAAAGACTGGATACT TATAGCCCTTTCTACTGTTATATTCCCAGAGTCTACAATAACCGGGCTTAATATCATTGGCTATGCAATTGCACTTTGTGGTGTTGTCATGTACAACTAC TTGAAAGTTAAGGATGTTCGTGCATCTCAACTGCCTGAAAGTATTCCAGATAGAATGACAAAGGATTGGAAATTGGAGAAGAAGTCATCTGATATATTCA CACCTAAAAACAGCAGTGATAACACCGGAGGAGGTGGTGGGGGGAATATGAATTCATCCTCGGATACGAATGTCGATGAAGAAGCACCTCTAATTTCATC AAGATTATCACATGTTGGTCGCACGCAGCTTAGCAAGTAG
AA sequence Show only first row Show all	>Potri.010G001700.2 pacid=42797549 polypeptide=Potri.010G001700.2.p locus=Potri.010G001700 ID=Potri.010G001700.2.v4.1 annot-version=v4.1 MMMVNKPLVLTYLYLLIYVLLSSGVILYNKWVLSPKYFNFPFPITLTMIHMGFSGAVAFFLIRVFKVVSPVKMTLEIYITCVVPISAFFAASLWFGNTAY LYISVAFIQMLKALMPVATFIMAVMCGTDKGRCDVFSNMLLVSVGVVISSYGEIHFNGVGTLYQVTGIFAEALRLVLTQVLLQKKGLTLNPITSLYYIAP CSFVFLCAPWYVLEKPGMEVSQIQFNFWIFFSNALCALALNFSIFLVIGRTGAVTIRVAGVLKDWILIALSTVIFPESTITGLNIIGYAIALCGVVMYNY LKVKDVRASQLPESIPDRMTKDWKLEKKSSDIFTPKNSSDNTGGGGGGNMNSSSDTNVDEEAPLISSRLSHVGRTQLSK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G17430			Nucleotide-sugar transporter f...		Potri.010G001700 [exp]	0	1
AT4G31480			Coatomer, beta subunit (.1.2)		Potri.006G273300 [exp]	2.64	0.8948
AT4G23460			Adaptin family protein (.1)		Potri.001G101400 [exp]	7.87	0.8835
AT5G43330		c-NAD-MDH2	cytosolic-NAD-dependent malate...		Potri.008G166800 [exp]	10.58	0.8349	CMDH.2
AT2G07360			SH3 domain-containing protein ...		Potri.018G149400 [exp]	10.95	0.8580
AT3G25800		PP2AA2, PR65, P...	protein phosphatase 2A subuni...		Potri.010G127500 [exp]	12.96	0.8262	PDF1.3
AT5G19780		TUA5	tubulin alpha-5 (.1)		Potri.001G004600 [exp]	14.83	0.8420
AT5G46290		KAS1, KAS I, KA...	KETOACYL-ACP SYNTHASE 1, 3-ket...		Potri.011G079700 [exp]	15.49	0.8638	Pt-I.1
AT3G52990			Pyruvate kinase family protein...		Potri.006G117400 [exp]	17.74	0.7970
AT4G27720			Major facilitator superfamily ...		Potri.012G020500 [exp]	18.33	0.8046
AT2G44100		AT-GDI1, ATGDI1	guanosine nucleotide diphospha...		Potri.017G001200 [exp]	19.05	0.8321	Pt-GDI.1

Compare expression of checked genes

Potri.010G001700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.