Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	RAP2.3,ERF34
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16770 130 / 6e-37 AP2_ERF RAP2.03, ATEBP, RAP2.3 ,ERF72 RELATED TO AP2 3, ETHYLENE RESPONSE FACTOR 72, ethylene-responsive element binding protein (.1) AT2G47520 103 / 2e-27 AP2_ERF AtERF71, ERF71, HRE2 HYPOXIA RESPONSIVE ERF \(ETHYLENE RESPONSE FACTOR\) 2, Arabidopsis thaliana ethylene response factor 71, Integrase-type DNA-binding superfamily protein (.1) AT1G53910 99 / 5e-24 AP2_ERF RAP2.12 related to AP2 12 (.1.2.3) AT1G72360 93 / 1e-22 AP2_ERF AtERF73, HRE1 HYPOXIA RESPONSIVE ERF \(ETHYLENE RESPONSE FACTOR\) 1, ethylene response factor 73, Integrase-type DNA-binding superfamily protein (.1.2.3) AT3G14230 92 / 2e-21 AP2_ERF RAP2.2 related to AP2 2 (.1.2.3) AT5G50080 86 / 4e-20 AP2_ERF ERF110 ethylene response factor 110 (.1) AT1G43160 84 / 6e-20 AP2_ERF RAP2.6, RAP2.06 related to AP2 6 (.1) AT2G33710 82 / 1e-18 AP2_ERF Integrase-type DNA-binding superfamily protein (.1.2) AT5G61890 82 / 2e-18 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT5G07310 80 / 1e-17 AP2_ERF Integrase-type DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G210900 [exp] 238 / 1e-78 AT3G16770 146 / 5e-43 RELATED TO AP2 3, ETHYLENE RESPONSE FACTOR 72, ethylene-responsive element binding protein (.1) Potri.002G201600 [exp] 118 / 2e-31 AT3G16770 123 / 2e-33 RELATED TO AP2 3, ETHYLENE RESPONSE FACTOR 72, ethylene-responsive element binding protein (.1) Potri.014G126100 [exp] 108 / 6e-28 AT3G16770 122 / 3e-33 RELATED TO AP2 3, ETHYLENE RESPONSE FACTOR 72, ethylene-responsive element binding protein (.1) Potri.003G071700 [exp] 105 / 3e-26 AT1G53910 223 / 7e-70 related to AP2 12 (.1.2.3) Potri.001G163700 [exp] 103 / 2e-25 AT1G53910 223 / 9e-70 related to AP2 12 (.1.2.3) Potri.005G195000 [exp] 86 / 5e-19 AT5G50080 108 / 5e-27 ethylene response factor 110 (.1) Potri.001G067600 [exp] 83 / 6e-19 AT5G13330 130 / 1e-37 related to AP2 6l (.1) Potri.003G162500 [exp] 82 / 1e-18 AT5G13330 142 / 5e-42 related to AP2 6l (.1) Potri.012G108500 [exp] 81 / 6e-18 AT5G61890 144 / 3e-42 Integrase-type DNA-binding superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016827 [exp] 135 / 2e-38 AT3G16770 183 / 4e-57 RELATED TO AP2 3, ETHYLENE RESPONSE FACTOR 72, ethylene-responsive element binding protein (.1) Lus10037487 [exp] 123 / 4e-34 AT3G16770 156 / 2e-47 RELATED TO AP2 3, ETHYLENE RESPONSE FACTOR 72, ethylene-responsive element binding protein (.1) Lus10003601 [exp] 113 / 4e-30 AT1G72360 144 / 2e-41 HYPOXIA RESPONSIVE ERF \(ETHYLENE RESPONSE FACTOR\) 1, ethylene response factor 73, Integrase-type DNA-binding superfamily protein (.1.2.3) Lus10008214 [exp] 111 / 3e-29 AT1G72360 154 / 2e-45 HYPOXIA RESPONSIVE ERF \(ETHYLENE RESPONSE FACTOR\) 1, ethylene response factor 73, Integrase-type DNA-binding superfamily protein (.1.2.3) Lus10013186 [exp] 101 / 9e-25 AT1G53910 254 / 7e-82 related to AP2 12 (.1.2.3) Lus10037448 [exp] 100 / 3e-24 AT1G53910 244 / 4e-78 related to AP2 12 (.1.2.3) Lus10006796 [exp] 85 / 6e-19 AT5G61890 122 / 8e-33 Integrase-type DNA-binding superfamily protein (.1) Lus10005805 [exp] 84 / 1e-18 AT5G61890 120 / 4e-32 Integrase-type DNA-binding superfamily protein (.1) Lus10042907 [exp] 79 / 2e-17 AT2G44840 135 / 5e-39 ethylene-responsive element binding factor 13 (.1) Lus10022426 [exp] 79 / 8e-17 AT5G61890 170 / 1e-51 Integrase-type DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [poplar] [flax] MBD-like PF00847 [poplar] [flax] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Potri.010G006800.1 pacid=42800098 polypeptide=Potri.010G006800.1.p locus=Potri.010G006800 ID=Potri.010G006800.1.v4.1 annot-version=v4.1 ATGTGTGGAGGTGCCATCATTTCCGATTTCGTATCCGTTAAACGTGGCCGGAAACCGACCACTGAGGATCTCTGGTCTGAACTTGACTCCTTATCTGATT TTCTTGGACTTGATCATCGTTCTATGAACAATATTAATAATGGTAGCAAAAAAGAAAACCTATCAAATCTCAAGCTCGCTCAAAAGCCACGCCAGCCCAA CCAAGTGATAACAGAGAGAGTTGAGAAGCCAAGCCAAGCAACAGAGCAAGAAGCCGGTAAAAAGAAGGTTCAGAGAACCAGAAAGAATGTGTATAGAGGA ATAAGGCAAAGGCCATGGGGTAAATGGGCAGCTGAAATAAGAGACCCACACAAAGGTGTTAGAGTTTGGCTGGGCACTTACAACACAGCTGATGAAGCCG CTAAAGCTTATGATGAAGCCGCCAAGCGCATCCGTGGAGATAAAGCCAAGCTCAACTTCCCCCCTCAGCCACCACCAACGTCGGAGGCGGCGCCACCACC ACCACCAAAGTCGGAGGCGGCGCCACCACCTGCCAAGAAACGTTGCATCTTGGGTCCTGAAACGGCTGCTATGGCTAGTTTTGAGCAAATCTTGAACTTG GAGTCGTTTCATGGCCTGGAAACGAAGCAGACGGCGGCCCAGCTGAGTTGTGACGGAGGTGGAAGTGGTGATTATAATTGTGACTCTGTGGACCCTTGGA TGCTTGATGATCTTATCAACATCAGCTTAATTATTAGTAAAATATAA
AA sequence Show only first row Show all	>Potri.010G006800.1 pacid=42800098 polypeptide=Potri.010G006800.1.p locus=Potri.010G006800 ID=Potri.010G006800.1.v4.1 annot-version=v4.1 MCGGAIISDFVSVKRGRKPTTEDLWSELDSLSDFLGLDHRSMNNINNGSKKENLSNLKLAQKPRQPNQVITERVEKPSQATEQEAGKKKVQRTRKNVYRG IRQRPWGKWAAEIRDPHKGVRVWLGTYNTADEAAKAYDEAAKRIRGDKAKLNFPPQPPPTSEAAPPPPPKSEAAPPPAKKRCILGPETAAMASFEQILNL ESFHGLETKQTAAQLSCDGGGSGDYNCDSVDPWMLDDLINISLIISKI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G16770	AP2_ERF	RAP2.03, ATEBP,...	RELATED TO AP2 3, ETHYLENE RES...		Potri.010G006800 [exp]	0	1	RAP2.3,ERF34
AT5G51060		ATRBOHC, RHD2	ROOT HAIR DEFECTIVE 2, A. THAL...		Potri.015G109800 [exp]	6.92	0.7819	RHD2.2
AT3G19000			2-oxoglutarate (2OG) and Fe(II...		Potri.004G146100 [exp]	7.93	0.7494
AT5G06710	HD	HAT14	homeobox from Arabidopsis thal...		Potri.009G023600 [exp]	8.48	0.7482
AT3G22260			Cysteine proteinases superfami...		Potri.016G019700 [exp]	10.48	0.7508
AT1G20980	SBP	ATSPL14, SPL1R2...	squamosa promoter binding prot...		Potri.002G002400 [exp]	12.36	0.7689
AT1G09970		RLK7, LRRXI-23 ...	receptor-like kinase 7, Leucin...		Potri.009G081800 [exp]	14.03	0.8022
AT3G20770	EIL	AtEIN3, EIN3	ETHYLENE-INSENSITIVE3, Ethylen...		Potri.010G247500 [exp]	16.27	0.6824	EIN3C,CMEIL2.1
AT3G29400		ATEXO70E1	exocyst subunit exo70 family p...		Potri.017G093833 [exp]	21.02	0.7213
					Potri.008G069350 [exp]	21.35	0.7136
AT2G19940			oxidoreductases, acting on the...		Potri.004G145700 [exp]	21.97	0.7140

Compare expression of checked genes

Potri.010G006800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.