Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21430 939 / 0 MYB ATALY3 ARABIDOPSIS THALIANA ALWAYS EARLY 3, ALWAYS EARLY 3, DNA binding (.2) AT3G05380 489 / 2e-154 MYB ALY2, ATALY2 ARABIDOPSIS THALIANA ALWAYS EARLY 2, ALWAYS EARLY 2, DIRP ;Myb-like DNA-binding domain (.1.2.3.4.5) AT5G27610 270 / 2e-75 MYB ATALY1 ARABIDOPSIS THALIANA ALWAYS EARLY 1, ALWAYS EARLY 1, DIRP ;Myb-like DNA-binding domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G216600 [exp] 1874 / 0 AT3G21430 1006 / 0.0 ARABIDOPSIS THALIANA ALWAYS EARLY 3, ALWAYS EARLY 3, DNA binding (.2) Potri.013G020500 [exp] 732 / 0 AT3G05380 807 / 0.0 ARABIDOPSIS THALIANA ALWAYS EARLY 2, ALWAYS EARLY 2, DIRP ;Myb-like DNA-binding domain (.1.2.3.4.5) Potri.005G029000 [exp] 713 / 0 AT3G05380 813 / 0.0 ARABIDOPSIS THALIANA ALWAYS EARLY 2, ALWAYS EARLY 2, DIRP ;Myb-like DNA-binding domain (.1.2.3.4.5)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033961 [exp] 1281 / 0 AT3G21430 941 / 0.0 ARABIDOPSIS THALIANA ALWAYS EARLY 3, ALWAYS EARLY 3, DNA binding (.2) Lus10002879 [exp] 1093 / 0 AT3G21430 764 / 0.0 ARABIDOPSIS THALIANA ALWAYS EARLY 3, ALWAYS EARLY 3, DNA binding (.2) Lus10004489 [exp] 266 / 5e-74 AT3G05380 558 / 0.0 ARABIDOPSIS THALIANA ALWAYS EARLY 2, ALWAYS EARLY 2, DIRP ;Myb-like DNA-binding domain (.1.2.3.4.5) Lus10029910 [exp] 263 / 3e-73 AT3G05380 549 / 1e-179 ARABIDOPSIS THALIANA ALWAYS EARLY 2, ALWAYS EARLY 2, DIRP ;Myb-like DNA-binding domain (.1.2.3.4.5)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00249 [poplar] [flax] Myb_DNA-binding Myb-like DNA-binding domain CL0123 [poplar] [flax] PF06584 [poplar] [flax] DIRP DIRP
Representative CDS sequence Show only first row Show all	>Potri.010G023201.1 pacid=42797224 polypeptide=Potri.010G023201.1.p locus=Potri.010G023201 ID=Potri.010G023201.1.v4.1 annot-version=v4.1 ATGGCTCCGTCGAGAAAAAGAAGTGTAAATAAGCGGTATTCAAACATTGATGAAGTCTCACCTAACAAAAATGCTGCAGAGATTGCTAATAAAAGCAGGC CGCGGAAGAGGAAGTTATCTAAAATGTTAGGGCCACAATGGGGTAAGGAAGAACTAGAGCAGTTCTATAAGGCGTATCGGAAACATGGGAAAGATTGGGA GAAGGTAGCTGCTGTGGTGCGGAACCGATCTGTGGGAATGGTAGAAGCCCTTTACACTATGAATAAGGCTTACTTATCTCTTCCAAAGGGCTTTGCTTCT GGTGCTGGACTAATTGCAATGATGACAGATCACTACTCTAATCTGGGAGAGAGTGACAGTGAGCTAGAAAGCAATGGGGGCACAGGACCCTCTCAAAAGC CTCAGAAGCGGGCTCGGGTAACCAAAGGATCAGAGGCACCGCCAGTTCTAGATCTTTTACAGTCCCAGCCAGCTGCATCAAATTATGGCTGCTTATCATT GTTAAAGAAAAGACGCTCTGGAAGCAAGCCTTGGGCTGTTGGGAAAAGGACTCCTCGTGTACCTGTTACATATTCCCATGATAAAGATAATGAGAAGTAT GTTTCACCAATTTGGCAAGGTATGAAAGTAAAGGCTGATGCTGTTGATGATGATGTTGCTCATGAGATAGCATTGGCCTTGACTGAGGCTTCACAAAGAG GTGGATCTCCCCAAGTTTCTCAAACTCCTAAGAGAAAAACAAAGACACCCTCACCTGCTCAGCATGATGAACTAATGCATCCTGAATCAGAGATGATGAG TGCCAAGCTTCGTGGCAGTGAAATGGACGAGGTGGGTTGTGAATTAAGTTTAGGCAGCACAGATGCTTACGGTGGAGATTATGCAAGAGATAGAATCTTT TGGAAGGGAAGGAGATACCATGGAAGGAGGTCACTAGAAGTAGAAGAAAATTTAGACAATCATTTGGATGATGTAAGAGAAGCCTGCAGTGGGACAGAGG AAGGGCAGAAACTGGAAGCTGTTGAAGAAAAATTTGAAATGGAGGTTGCGTATTCAAAACTTGTGAGGTCCTCCAAGGGTTCAAGAAAGAGAAGTAAGAA GGTTCTGTTTGGGGAAGTTGAAGACACCGACTTCGATGCCTTAGAAGCACTTGCTGATTTATCCTTGAGGTTGCCAGAAACATCTGTTGACACGGGGCTG TCTGCTCTTGTTGAGGAAGAAAAGACCGGGATCGTTGCCAAGTCTAAGCTGAAAGGGAATCGTTCTTCTCCTGGTGTAAAACCTATCTCCTTCAAGAACA CTAAACACGGAAAAGTATTCACTCATAACGTTACTTCTATTCCAGAAGTAAAGGAAGCACCCTATCAGATCAGTCCTGTGATGCGGAAAAGAAGACAAAA GCCCTCGCCATCTAAAATTTCAGAAAATGAAAAGCATGCTGATTCTCATCTGGGTGAATCTCAAAAGGTTGAGATTACAAAAGATGATGATAACTTTGTG AGTAAAGGAAAATGCTCGCAGGATGCCCCATGCTTTAAAGAAGGGAAATTGATGAAACCTGCAGAACGTACTTCTTCTAGTAATAATCATGGAAGGGAAT TGAATGATTTTGCTCCAACTACCATCCGGGTTTTATCTGCCAACCAATTCAACATGCCTACTAAAGTGAGGAGTAGCCGTAAGCTAAACACTCCGAAGCT CTTGGTCGAGAAAGATTCCAAGTCTTCAGAGAATATTGTAAATAGCCAATCTAATACTGTCATTCCTTCATTCCAGGACAGAGTTCCTAGTCTTAAGGGA AAGCTTTCTAATTGCCTTTCCCGGTATCTAGTCCGAAGATGGTGTGTTTTTGAATGGTTCAATAGTGCAATAGATTATCCATGGTTTGCTAAAAGGGAAT TTGTTGAATACCTGGAGCATGTTGGATTGGCTCATATCCCAAGACTAACTCGTGTTGAATGGGGTGTCATTCGGAGTTCCCTTGGTAAACCACGAAGATT TTCAGAGCAATTTTTGAAGGAAGAGAAAGAGAAGCTTTACCAATATCGAGAATCTGTTAGAGAACATTATGCAGAACTCCGTGCTGGAACTATGGATGGA CTACCAACTGATTTAGCCCGACCTTTATCAGTTGGTCAACGCATTCTTGCTCTTCATCCAAGGACAAGTGAGATTCATGATGGAAGTATATTAACTGTTG ATCATAGTCGCTGCTGTGTTCAGTTTGACCGACCTGAACTAGGGGTTGAATTTGTCATGGATGTCCATTGCATGCCTTTGAATCCATTGGAAAACATGCC TGCATCTATGATTGGGCACAATATTGCCTTGAATAGATACATTAAGAACTTAAATGAGCTCAAAATCAATGTGCGACCAGCAGAGAAGATGGAAGAATTC AAATTTTCACCATGTGAGAACCTGGAGGGTGCCAGTGCTCTTCCACATACTTCCCCATTGACTTATCCTAGTAGCGATTTATTACAGCAGCCAAAGGGGG GTTTGTTAGGTTCTAACACACAAGTCAATATTGGAGGTGAAACTGTTGGTGCCCAGCCTTCTTTTTGTGCACAGATCCAAGCTAAGGAAGCTGATATCCA TGCTCTTTCTGAATTAACTCAAGCTCTTGACAAAAAGGAGGCTGTCGTGTCTGAGTTGAAGCACATGAATGATGAGGTGTTGGAAAGCCAAAAACATGGA GATTACTCTCTCAAGGATTCGGAAGTTTTTAAAAAGCACTATGCTGCAGTACTCCTACAGTTAAATGAGGTCAATGAGCTGGTTTCTTCTGCTCTCTTTT GCTTGAGGGAACGTAACACATACCAAGGGAACATCCCTCATGTGTTGCTGAAGCCTGGAGCCAATATAGATGAGCCAGCATGCCATAGCAGCTCCTTCGA TTCTTCTACGGATGATACTCAAGAATCTGGATCTCATGTGGTGGAAATTGTTGAAAGTTCAAGAACGAAAGCCCAGACAATGGTTGATGCAGCTATGCAG GCAATGTTATCCTTGAAGAAGGAAGGAAGCAGCATTGATAGTATTGAGGACGCCATAGATTTTGTAAATAATAAGCTTTCAGCAGATGATTTAAGTGTGC CAGCCATTAGATCTTCTATCCCTGCAATTTCAGCTCAAGGTACTCTGGCTTCTCAGGATCATTTAAGTTCCTGTGCAGCAAATCCAGAGGCAATTAACGA TGCACCTGATGCAAAGTTTAACAATTTGTCCACCCAAAATGAAGTACAAATCCCTACAGAGCTTATTTCACACTGTGTAGCTACTTTACTAATGATTCAG AGATGTACAGAAAGACAATTTCCACCGAGTGACGTAGCCGTGGTACTGGATTCTGCAGTTACAAGTTTGAAGCCATGTTGTTCAACAAACCTTCCCATTT ATGCAGAGATACAGAAATGCATGGGCATTATTAGGAATCAGATATTAGCACTGATACCTACGTAG
AA sequence Show only first row Show all	>Potri.010G023201.1 pacid=42797224 polypeptide=Potri.010G023201.1.p locus=Potri.010G023201 ID=Potri.010G023201.1.v4.1 annot-version=v4.1 MAPSRKRSVNKRYSNIDEVSPNKNAAEIANKSRPRKRKLSKMLGPQWGKEELEQFYKAYRKHGKDWEKVAAVVRNRSVGMVEALYTMNKAYLSLPKGFAS GAGLIAMMTDHYSNLGESDSELESNGGTGPSQKPQKRARVTKGSEAPPVLDLLQSQPAASNYGCLSLLKKRRSGSKPWAVGKRTPRVPVTYSHDKDNEKY VSPIWQGMKVKADAVDDDVAHEIALALTEASQRGGSPQVSQTPKRKTKTPSPAQHDELMHPESEMMSAKLRGSEMDEVGCELSLGSTDAYGGDYARDRIF WKGRRYHGRRSLEVEENLDNHLDDVREACSGTEEGQKLEAVEEKFEMEVAYSKLVRSSKGSRKRSKKVLFGEVEDTDFDALEALADLSLRLPETSVDTGL SALVEEEKTGIVAKSKLKGNRSSPGVKPISFKNTKHGKVFTHNVTSIPEVKEAPYQISPVMRKRRQKPSPSKISENEKHADSHLGESQKVEITKDDDNFV SKGKCSQDAPCFKEGKLMKPAERTSSSNNHGRELNDFAPTTIRVLSANQFNMPTKVRSSRKLNTPKLLVEKDSKSSENIVNSQSNTVIPSFQDRVPSLKG KLSNCLSRYLVRRWCVFEWFNSAIDYPWFAKREFVEYLEHVGLAHIPRLTRVEWGVIRSSLGKPRRFSEQFLKEEKEKLYQYRESVREHYAELRAGTMDG LPTDLARPLSVGQRILALHPRTSEIHDGSILTVDHSRCCVQFDRPELGVEFVMDVHCMPLNPLENMPASMIGHNIALNRYIKNLNELKINVRPAEKMEEF KFSPCENLEGASALPHTSPLTYPSSDLLQQPKGGLLGSNTQVNIGGETVGAQPSFCAQIQAKEADIHALSELTQALDKKEAVVSELKHMNDEVLESQKHG DYSLKDSEVFKKHYAAVLLQLNEVNELVSSALFCLRERNTYQGNIPHVLLKPGANIDEPACHSSSFDSSTDDTQESGSHVVEIVESSRTKAQTMVDAAMQ AMLSLKKEGSSIDSIEDAIDFVNNKLSADDLSVPAIRSSIPAISAQGTLASQDHLSSCAANPEAINDAPDAKFNNLSTQNEVQIPTELISHCVATLLMIQ RCTERQFPPSDVAVVLDSAVTSLKPCCSTNLPIYAEIQKCMGIIRNQILALIPT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G21430	MYB	ATALY3	ARABIDOPSIS THALIANA ALWAYS EA...		Potri.010G023201 [exp]	0	1
AT1G22860			Vacuolar sorting protein 39 (....		Potri.001G081900 [exp]	4.24	0.8758
AT3G14470			NB-ARC domain-containing disea...		Potri.012G123400 [exp]	10.48	0.8330
AT3G24870			Helicase/SANT-associated, DNA ...		Potri.002G243400 [exp]	10.67	0.8508
AT4G32820			Tetratricopeptide repeat (TPR)...		Potri.018G057900 [exp]	11.53	0.8490
AT4G08350		GTA2, GTA02	global transcription factor gr...		Potri.009G124200 [exp]	13.41	0.8569
AT3G17450			hAT dimerisation domain-contai...		Potri.014G114100 [exp]	15.29	0.8391
AT3G55320		ABCB20, PGP20	ATP-binding cassette B20, P-gl...		Potri.008G050400 [exp]	18.70	0.8265
AT5G27460			Tetratricopeptide repeat (TPR)...		Potri.005G160100 [exp]	23.32	0.8371
AT5G25150		TAF5	TBP-associated factor 5 (.1)		Potri.018G020200 [exp]	23.62	0.8217
AT5G07980			dentin sialophosphoprotein-rel...		Potri.012G061400 [exp]	25.51	0.8336

Compare expression of checked genes

Potri.010G023201 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.