Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G24590 71 / 2e-13 AP2_ERF ESR2, DRNL, SOB2, DRN-LIKE FOR SUPPRESSOR OF PHYTOCHROMEB-4 2, ENHANCER OF SHOOT REGENERATION 2, DORNROSCHEN-like (.1) AT1G12980 68 / 2e-12 AP2_ERF DRN, ESR1 ENHANCER OF SHOOT REGENERATION 1, DORNROSCHEN, Integrase-type DNA-binding superfamily protein (.1) AT5G13910 63 / 3e-11 AP2_ERF LEAFY PETIOLE (LEP) LEAFY PETIOLE, Integrase-type DNA-binding superfamily protein (.1) AT5G18560 62 / 2e-10 AP2_ERF PUCHI Integrase-type DNA-binding superfamily protein (.1) AT1G28160 58 / 2e-09 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT1G28360 55 / 1e-08 AP2_ERF AtERF12 ERF domain protein 12 (.1) AT3G15210 50 / 7e-07 AP2_ERF ATERF4, RAP2.5, ATERF-4 RELATED TO AP2 5, ethylene responsive element binding factor 4 (.1) AT5G44210 50 / 7e-07 AP2_ERF AtERF9, ATERF-9 ERF DOMAIN PROTEIN- 9, erf domain protein 9 (.1) AT1G12890 50 / 8e-07 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT1G53170 49 / 1e-06 AP2_ERF ATERF8, ATERF-8 ETHYLENE RESPONSE ELEMENT BINDING FACTOR 4, ethylene response factor 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G186300 [exp] 463 / 2e-162 AT1G24590 69 / 1e-12 FOR SUPPRESSOR OF PHYTOCHROMEB-4 2, ENHANCER OF SHOOT REGENERATION 2, DORNROSCHEN-like (.1) Potri.001G069300 [exp] 64 / 4e-11 AT1G28160 121 / 7e-33 Integrase-type DNA-binding superfamily protein (.1) Potri.003G161000 [exp] 63 / 7e-11 AT1G28160 128 / 1e-35 Integrase-type DNA-binding superfamily protein (.1) Potri.001G157100 [exp] 62 / 9e-11 AT5G13910 101 / 6e-26 LEAFY PETIOLE, Integrase-type DNA-binding superfamily protein (.1) Potri.003G077700 [exp] 62 / 1e-10 AT5G13910 118 / 3e-32 LEAFY PETIOLE, Integrase-type DNA-binding superfamily protein (.1) Potri.008G215600 [exp] 61 / 4e-10 AT5G18560 176 / 4e-52 Integrase-type DNA-binding superfamily protein (.1) Potri.004G047600 [exp] 55 / 2e-08 AT5G44210 99 / 2e-25 ERF DOMAIN PROTEIN- 9, erf domain protein 9 (.1) Potri.011G056900 [exp] 54 / 2e-08 AT1G28360 149 / 6e-46 ERF domain protein 12 (.1) Potri.002G043300 [exp] 54 / 2e-08 AT5G44210 88 / 8e-22 ERF DOMAIN PROTEIN- 9, erf domain protein 9 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035076 [exp] 74 / 3e-14 AT1G24590 143 / 2e-40 FOR SUPPRESSOR OF PHYTOCHROMEB-4 2, ENHANCER OF SHOOT REGENERATION 2, DORNROSCHEN-like (.1) Lus10017907 [exp] 66 / 1e-11 AT1G24590 134 / 1e-37 FOR SUPPRESSOR OF PHYTOCHROMEB-4 2, ENHANCER OF SHOOT REGENERATION 2, DORNROSCHEN-like (.1) Lus10035129 [exp] 64 / 3e-11 AT5G13910 152 / 7e-46 LEAFY PETIOLE, Integrase-type DNA-binding superfamily protein (.1) Lus10033963 [exp] 57 / 9e-09 AT5G18560 186 / 4e-56 Integrase-type DNA-binding superfamily protein (.1) Lus10039857 [exp] 54 / 4e-08 AT5G44210 138 / 8e-41 ERF DOMAIN PROTEIN- 9, erf domain protein 9 (.1) Lus10033664 [exp] 51 / 3e-07 AT3G15210 119 / 2e-33 RELATED TO AP2 5, ethylene responsive element binding factor 4 (.1) Lus10005343 [exp] 48 / 1e-06 AT5G25190 174 / 3e-56 ethylene and salt inducible 3, Integrase-type DNA-binding superfamily protein (.1) Lus10015415 [exp] 47 / 1e-05 AT5G44210 134 / 8e-39 ERF DOMAIN PROTEIN- 9, erf domain protein 9 (.1) Lus10016815 [exp] 46 / 1e-05 AT5G25190 206 / 1e-68 ethylene and salt inducible 3, Integrase-type DNA-binding superfamily protein (.1) Lus10008214 [exp] 46 / 2e-05 AT1G72360 154 / 2e-45 HYPOXIA RESPONSIVE ERF \(ETHYLENE RESPONSE FACTOR\) 1, ethylene response factor 73, Integrase-type DNA-binding superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [poplar] [flax] MBD-like PF00847 [poplar] [flax] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Potri.010G046600.1 pacid=42797463 polypeptide=Potri.010G046600.1.p locus=Potri.010G046600 ID=Potri.010G046600.1.v4.1 annot-version=v4.1 ATGGAAGAAGCACTTAGAAGGCTCAACGGAGTGCCGAGCCATATGCCAGAATCCAACTCGTACGAACCCATAATCGCCGACCTCCAGAAGAAGTCCGCGC CTAGCACCACGACAAACAAAAGGTCACTGAAAGAAGGTGGTGGCAATAGTGGAAACATGAGGTACCGTGGCGTCCGCAGGAGGCCATGGGGTCGTTATGC AGCCGAGATAAGGGATCCTCAGTCTAAGGAACGGCGTTGGCTCGGGACTTTTGACACTGCTGAGGAGGCTGCTTGTGCCTATGACTATGCAGCTCGAGTA ATGCGAGGTATCAAGGCTCGTACTAATTTTGTGTACCCTGAGACTTATTCTGCAACAACTGACTCCCATAATTTGCTCCCTCCATTTACTTTCTCAAAAT CATCTCATCATCAGCCCTCTCGCCAGTATAATACAGTGCCCTCTTCAAATTGGTCTTCTGTCGGTCACTCTCATGTGGGTGACTTCTCTGCTGGTGGGTC TGCTCCACAGAGGAGTACTAGTGGCAGTTCCGCTAACACTTCCACTCTGAACATGCTTTTTCTTCGTGATTTCGTAAACTCCTCTTCAGGTTCGTCGTCT CAAAATCATTCTCAACCTTTATATGATCACTTTCCCTGCATCAATGGGTCCTCCTATTCTGCTCCTAGTACTTTCGCAGGTGGTTCTTTGGGGAACCCTT CTAGTAACACCAGTAGTACTAGTCCATATAATTTCTCTGGAACTTTGGCAGACTCAACTGTCACTAGTCTACCCCACATGGAGTTTAATCAGAATTATAC TCCTGGAGTCCTGAATAGTCCCAACTCAAAAGCTGAAGAGTTGGAATTCTTTCCACAAGAACCATCTGGCTCTGGTTTGTTGCAAGAAATAATTCAAGGG TTTTTGCCTAAGCACTCCACTGAAAAGATTGACTTTTCAAAAAGCTATGGAGAGTCGATGGTTGCACCATCAGCTGAAATAATATCTGGTGGTCAGTCGC TAGATGGATTGAGAAGGAGCACGAAGTACTTCGTTAAAAATGAGCACCAGGGTGCTTATCTTGATCATGAAGGAATGAAGTCATCAGGGCAGCCTGAGGG CTGTTACCGTACTGGGGTTAGTTGTCATGACCAAGTATCATACGATAATGAGATGTCACTAAATCTTCCAGTGGGTCAGGACTCCTTTCTGGAAGATATT TTTCAGTACCCAGATCTTATGAGTGCCTTTGCAGCTAGGTTCAAGAATGCTTGA
AA sequence Show only first row Show all	>Potri.010G046600.1 pacid=42797463 polypeptide=Potri.010G046600.1.p locus=Potri.010G046600 ID=Potri.010G046600.1.v4.1 annot-version=v4.1 MEEALRRLNGVPSHMPESNSYEPIIADLQKKSAPSTTTNKRSLKEGGGNSGNMRYRGVRRRPWGRYAAEIRDPQSKERRWLGTFDTAEEAACAYDYAARV MRGIKARTNFVYPETYSATTDSHNLLPPFTFSKSSHHQPSRQYNTVPSSNWSSVGHSHVGDFSAGGSAPQRSTSGSSANTSTLNMLFLRDFVNSSSGSSS QNHSQPLYDHFPCINGSSYSAPSTFAGGSLGNPSSNTSSTSPYNFSGTLADSTVTSLPHMEFNQNYTPGVLNSPNSKAEELEFFPQEPSGSGLLQEIIQG FLPKHSTEKIDFSKSYGESMVAPSAEIISGGQSLDGLRRSTKYFVKNEHQGAYLDHEGMKSSGQPEGCYRTGVSCHDQVSYDNEMSLNLPVGQDSFLEDI FQYPDLMSAFAARFKNA

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G24590	AP2_ERF	ESR2, DRNL, SOB...	FOR SUPPRESSOR OF PHYTOCHROMEB...		Potri.010G046600 [exp]	0	1
AT5G60440	MADS	AGL62	AGAMOUS-like 62 (.1)		Potri.017G040700 [exp]	2.00	0.9973
AT3G11680			Aluminium activated malate tra...		Potri.016G070100 [exp]	7.54	0.9975
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Potri.019G008406 [exp]	8.48	0.9971
AT3G57650		LPAT2	lysophosphatidyl acyltransfera...		Potri.009G054500 [exp]	13.30	0.9974
AT5G41040			HXXXD-type acyl-transferase fa...		Potri.014G166600 [exp]	16.88	0.9973	HCQL4
AT5G45950			GDSL-like Lipase/Acylhydrolase...		Potri.004G051900 [exp]	17.32	0.9954
AT4G37370		CYP81D8	"cytochrome P450, family 81, s...		Potri.003G006000 [exp]	20.32	0.9970	CYP81S3,Pt-CYP81.3
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Potri.019G005400 [exp]	21.90	0.9967
AT5G48380		BIR1	BAK1-interacting receptor-like...		Potri.007G144000 [exp]	22.84	0.9343
AT3G01140	MYB	NOK, ATMYB106	NOECK, myb domain protein 106 ...		Potri.010G165700 [exp]	23.49	0.9922

Compare expression of checked genes

Potri.010G046600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.