Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67710 380 / 3e-126 GARP ARR11 response regulator 11 (.1) AT4G16110 288 / 3e-89 GARP ARR2 response regulator 2 (.1) AT3G16857 286 / 2e-88 GARP ARR1 response regulator 1 (.1.2) AT2G01760 266 / 7e-84 GARP ARR14 response regulator 14 (.1) AT2G25180 264 / 1e-80 GARP ARR12 response regulator 12 (.1) AT4G31920 246 / 2e-74 GARP ARR10 response regulator 10 (.1) AT5G58080 221 / 2e-64 GARP ARR18 response regulator 18 (.1) AT5G49240 168 / 8e-48 GARP APRR4 pseudo-response regulator 4 (.1) AT5G07210 134 / 4e-33 GARP ARR21 response regulator 21 (.1) AT2G27070 128 / 2e-31 GARP ARR13 response regulator 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G181000 [exp] 882 / 0 AT1G67710 383 / 5e-127 response regulator 11 (.1) Potri.010G105600 [exp] 312 / 2e-98 AT4G16110 376 / 2e-121 response regulator 2 (.1) Potri.008G213500 [exp] 310 / 2e-97 AT4G16110 602 / 0.0 response regulator 2 (.1) Potri.008G135500 [exp] 308 / 9e-97 AT4G16110 370 / 3e-119 response regulator 2 (.1) Potri.010G001000 [exp] 299 / 2e-93 AT4G16110 602 / 0.0 response regulator 2 (.1) Potri.018G111300 [exp] 267 / 8e-81 AT2G25180 348 / 3e-111 response regulator 12 (.1) Potri.006G188000 [exp] 266 / 1e-80 AT2G25180 386 / 8e-126 response regulator 12 (.1) Potri.006G262100 [exp] 265 / 4e-80 AT2G25180 381 / 6e-124 response regulator 12 (.1) Potri.018G021300 [exp] 255 / 8e-77 AT2G25180 364 / 2e-117 response regulator 12 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011389 [exp] 439 / 3e-151 AT1G67710 385 / 1e-130 response regulator 11 (.1) Lus10006446 [exp] 428 / 2e-146 AT1G67710 377 / 9e-127 response regulator 11 (.1) Lus10016846 [exp] 301 / 1e-93 AT3G16857 603 / 0.0 response regulator 1 (.1.2) Lus10037719 [exp] 298 / 2e-92 AT3G16857 613 / 0.0 response regulator 1 (.1.2) Lus10005340 [exp] 280 / 3e-86 AT2G25180 414 / 3e-137 response regulator 12 (.1) Lus10041020 [exp] 277 / 4e-85 AT2G25180 412 / 3e-136 response regulator 12 (.1) Lus10019058 [exp] 251 / 2e-76 AT2G25180 290 / 1e-90 response regulator 12 (.1) Lus10036303 [exp] 241 / 2e-72 AT2G25180 294 / 4e-92 response regulator 12 (.1) Lus10025044 [exp] 184 / 3e-52 AT4G31920 220 / 6e-65 response regulator 10 (.1) Lus10027416 [exp] 157 / 2e-41 AT4G16110 169 / 4e-45 response regulator 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0304 [poplar] [flax] CheY PF00072 [poplar] [flax] Response_reg Response regulator receiver domain CL0123 [poplar] [flax] HTH PF00249 [poplar] [flax] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.010G053100.1 pacid=42797734 polypeptide=Potri.010G053100.1.p locus=Potri.010G053100 ID=Potri.010G053100.1.v4.1 annot-version=v4.1 ATGATGGAGAATGGTTTCTCCTCTCCCCGGAATGATTCGTTTCCTGCTGGTCTCCGTGTTCTCGTTGTCGATGATGATCCCACCTGGTTAAAAATCCTTG AAAAGATGCTCAAGAGATGCTCTTATGAAGTGACCACCTGCGGTTTGGCAAGAGATGCTTTGAACCTACTTCGTGAGAGGAAAGGTGGATATGACATTGT AATCAGTGACGTCTACATGCCTGACATGGATGGTTTCAAACTGTTAGAGCATGTTGGACTGGAGATGGATCTTCCCGTAATTATGATGTCTGTTGATGGA GAGACGAGCAGGGTGATGAAAGGTGTCCAACACGGAGCTTGTGATTATCTTCTTAAGCCTATACGAATGAAAGAACTCCGGAATATATGGCAGCATGTAT TCAGAAAGAAAATACACGAGGTAAGAGATATTGAAATTCTCGAAGGGATCGAAAGTTTTCAAATGACTAGAAATGGATCAGATCTATATGAGGATGGCCA TTTTCTCTGTGGAGAAGACCTTACTTTGATAAAGAAAAGAAAAGATATCGAAAGCAAGCACGATGAAAAAGACATTGGTGATAATACTTCTGCAAAGAAA GCTAGAGTAGTTTGGTCTGTAGAACTTCATCAGAAATTTGTCAAAGCAGTAAATCAGATAGGATTTGATAAAGTTGGTCCAAAGAAAATACTTGACTTGA TGAATGTGCCGCGTTTGACAAGGGAAAATGTCGCTAGCCATTTGCAGAAATACCGTCTCTATTTGAGTAGATTGCAGAAAGGAAACGATTTTAACAATCC CGTTGGTATGATAAAGCAGTCGGACTCACCTTTGAGTGATTCTGCTGGAAGTTTTGGCTCTCAGAATTCAATCAATTTGCAGCCAACTGATGTTTCAAAT GGGTGCTACGGATTTTCTGTCAGTAGCTTGGTTCTTCACAATGTGGATCCCAGAAGCCACAATGGTGATAGAAAGATACTTGTTACAACGCCTGTGGCAG AACCCAAAAGAGGCGTAACAGTTGATGCTCCCAATCCTCGTAAACCCAGGATTTCACAGATGGAATTTGGCCATCCCCTTGCACCTCATTTTAATGATGG GTTTAGCCACCTACCAATGCCTGGTCAGAAGCAGCTTACACGAGCTGATTATCCACAGCCTGCTCGAGCCATCAGTTCTGCACATTCCTTGACAGAAAGA GAAATTGGTTGCCCTGTCAAAATTAAGCCTTCACGTAATGACTACGGCAGCAATGCCAGCCATGTAAGTTCAACAGCAAATGCAGTTGACTCTATCCCTC TTCAAACGAAGACCAACTCGACAAATCATCAAGTGTCAAGCACTTCTAGTATGGAAAATCAAGGCTTGAATATGAATTGCCTTACAGATGTGGAATCTTC CAGAAAAAACATAAATTTGGGAATGCCGCCTTTCGCTCCTTTGGATGAGGACTTGCAAGTACGTTTTGTTCCAGGTGATTACTATATGAATCTCGGGCTC CAAAACATAGAGGTTCCGGAATATTTTGACCCAAGTCTTCTCACAGACGTACCGATACACTTGAATGATGGGCTGAGGTTTGACTATGAGTTCTATGACC CCACAGAATATTCTCTAATAGATCAAAGCTTGTTTATATGA
AA sequence Show only first row Show all	>Potri.010G053100.1 pacid=42797734 polypeptide=Potri.010G053100.1.p locus=Potri.010G053100 ID=Potri.010G053100.1.v4.1 annot-version=v4.1 MMENGFSSPRNDSFPAGLRVLVVDDDPTWLKILEKMLKRCSYEVTTCGLARDALNLLRERKGGYDIVISDVYMPDMDGFKLLEHVGLEMDLPVIMMSVDG ETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKIHEVRDIEILEGIESFQMTRNGSDLYEDGHFLCGEDLTLIKKRKDIESKHDEKDIGDNTSAKK ARVVWSVELHQKFVKAVNQIGFDKVGPKKILDLMNVPRLTRENVASHLQKYRLYLSRLQKGNDFNNPVGMIKQSDSPLSDSAGSFGSQNSINLQPTDVSN GCYGFSVSSLVLHNVDPRSHNGDRKILVTTPVAEPKRGVTVDAPNPRKPRISQMEFGHPLAPHFNDGFSHLPMPGQKQLTRADYPQPARAISSAHSLTER EIGCPVKIKPSRNDYGSNASHVSSTANAVDSIPLQTKTNSTNHQVSSTSSMENQGLNMNCLTDVESSRKNINLGMPPFAPLDEDLQVRFVPGDYYMNLGL QNIEVPEYFDPSLLTDVPIHLNDGLRFDYEFYDPTEYSLIDQSLFI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G67710	GARP	ARR11	response regulator 11 (.1)		Potri.010G053100 [exp]	0	1
AT1G04570			Major facilitator superfamily ...		Potri.008G173600 [exp]	4.24	0.8291
AT5G55650			unknown protein		Potri.014G167700 [exp]	6.92	0.8392
AT5G09220		AAP2	amino acid permease 2 (.1)		Potri.007G100100 [exp]	7.48	0.8079
AT1G08990		PGSIP5	plant glycogenin-like starch i...		Potri.013G022900 [exp]	8.24	0.7754
AT1G61310			LRR and NB-ARC domains-contain...		Potri.001G427670 [exp]	11.31	0.8512
AT1G61310			LRR and NB-ARC domains-contain...		Potri.001G426030 [exp]	13.63	0.8588
AT1G70630			Nucleotide-diphospho-sugar tra...		Potri.010G046100 [exp]	13.78	0.7994
AT5G65210	bZIP	TGA1	bZIP transcription factor fami...		Potri.007G085700 [exp]	13.96	0.8073	Pt-STGA1.4
AT1G79740			hAT transposon superfamily (.1...		Potri.018G135702 [exp]	15.16	0.8253
AT1G80490		TPR1	TOPLESS-related 1 (.1.2)		Potri.018G023900 [exp]	16.91	0.8087

Compare expression of checked genes

Potri.010G053100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.