Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40780 670 / 0 LHT1, LTH1 lysine histidine transporter 1 (.1.2) AT1G24400 662 / 0 ATLHT2, AATL2, LHT2 ARABIDOPSIS LYSINE HISTIDINE TRANSPORTER 2, AMINO ACID TRANSPORTER-LIKE PROTEIN 2, lysine histidine transporter 2 (.1) AT1G67640 644 / 0 Transmembrane amino acid transporter family protein (.1) AT1G48640 622 / 0 Transmembrane amino acid transporter family protein (.1) AT1G61270 538 / 0 Transmembrane amino acid transporter family protein (.1) AT3G01760 521 / 0 Transmembrane amino acid transporter family protein (.1) AT1G25530 501 / 8e-177 Transmembrane amino acid transporter family protein (.1) AT1G71680 491 / 9e-173 Transmembrane amino acid transporter family protein (.1) AT1G47670 280 / 4e-89 Transmembrane amino acid transporter family protein (.1) AT4G35180 199 / 1e-58 LHT7 LYS/HIS transporter 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G179000 [exp] 764 / 0 AT1G24400 654 / 0.0 ARABIDOPSIS LYSINE HISTIDINE TRANSPORTER 2, AMINO ACID TRANSPORTER-LIKE PROTEIN 2, lysine histidine transporter 2 (.1) Potri.001G335300 [exp] 684 / 0 AT5G40780 752 / 0.0 lysine histidine transporter 1 (.1.2) Potri.001G335200 [exp] 677 / 0 AT5G40780 697 / 0.0 lysine histidine transporter 1 (.1.2) Potri.015G091600 [exp] 622 / 0 AT5G40780 610 / 0.0 lysine histidine transporter 1 (.1.2) Potri.010G128300 [exp] 522 / 0 AT1G25530 687 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.008G118000 [exp] 522 / 0 AT1G25530 677 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.014G036500 [exp] 287 / 1e-91 AT1G47670 922 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.002G012900 [exp] 281 / 1e-89 AT1G47670 577 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.004G181200 [exp] 248 / 7e-77 AT1G47670 504 / 3e-175 Transmembrane amino acid transporter family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041581 [exp] 676 / 0 AT5G40780 798 / 0.0 lysine histidine transporter 1 (.1.2) Lus10022329 [exp] 676 / 0 AT5G40780 798 / 0.0 lysine histidine transporter 1 (.1.2) Lus10014606 [exp] 658 / 0 AT5G40780 746 / 0.0 lysine histidine transporter 1 (.1.2) Lus10014605 [exp] 641 / 0 AT5G40780 744 / 0.0 lysine histidine transporter 1 (.1.2) Lus10041580 [exp] 572 / 0 AT5G40780 652 / 0.0 lysine histidine transporter 1 (.1.2) Lus10041482 [exp] 499 / 1e-175 AT1G25530 666 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10008263 [exp] 499 / 1e-174 AT1G71680 572 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10032074 [exp] 494 / 2e-174 AT5G40780 535 / 0.0 lysine histidine transporter 1 (.1.2) Lus10034283 [exp] 417 / 6e-145 AT1G25530 542 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10032073 [exp] 363 / 4e-123 AT5G40780 451 / 8e-158 lysine histidine transporter 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [poplar] [flax] APC PF03222 [poplar] [flax] Trp_Tyr_perm Tryptophan/tyrosine permease family
Representative CDS sequence Show only first row Show all	>Potri.010G055800.1 pacid=42798786 polypeptide=Potri.010G055800.1.p locus=Potri.010G055800 ID=Potri.010G055800.1.v4.1 annot-version=v4.1 ATGCCATCCAATGAGTCACAGAACGATGAAGCAGCAAGAGAAAAGGCCATAAATGATTGGCTTCCAGTCACTTCCTCGAGGAATGCCAAATGGTGGTACT CAACCTTCCACAATGTCACTGCCATGGTTGGTGCTGGTGTTCTTAGTCTCCCCTATGCCATGGCTCAACTTGGATGGGGACCAGGTGTTGCCATACTTTT TTTATCATGGGTGATCACGTTATACACTCTATGGCAAATGGTTGAAATGCATGAGATGGTTCCTGGTAAGCGATTTGATAGATACCATGAGCTAGGGCAA CATGCGTTTGGAGAGAAGCTGGGTCTCTGGATTGTTGTGCCACAGCAACTAGTTGTACAAGTTGGAGTAAACATAGTCTATATGGTTACCGGAGGAAAAT CATTGAAGAAGTTCCATGATTTGGTTTGCTCCGACTGCAAAGACATCAGGCTAACGTACTTCATCATGATTTTCGCTTCGCTTCAGTTTGTTCTGGCTCA TCTTCCCAATCTCAACTCCATTAGTGTTATCTCTCTGGCTGCAGCAGTCATGTCCTTGAGTTACTCCACAATTGCCTGGGGAGCCACCCTTAATAAGGGT GTTCAGCCTGATGTCGACTACAGCTATAAAGCGAGCACTAAAACCGGAGCTGTCTTTGACTTTTTCTCTGCCTTGGGTGATATAGCTTTTGCATATGCCG GTCACAATGTGATCTTGGAGATCCAAGCAACAATTCCCTCTACTCCAGAGAAGCCTTCCAAGAAACCCATGTGGAGAGGAGCCTTCCTTGCATATGTTGT CGTCGCCATCTGCTACTTCCCAGTTGCCTTGATTGGATACTGGTTTTTTGGAAACAGCGTGGAAGACAACATTCTTATCTCACTCGAGAAACCAGCTTGG CTTATTGCAACTGCTAACATGTTTGTTGTCATTCATGTTATTGGAAGTTATCAGATATATGCTATGGCAGTGTTCGACATGTTGGAAACTGCATTGGTGA AGAAACTCCATTTTTCTCCTTCTTTCATGCTTCGCTTTGTTACTCGCACGGTATATGTTGGGTTCACAATGATTGTTGGTATATGTATTCCATTCTTCGG TGGCCTGCTTTCGTTCTTCGGAGGATTTGCTTTTGCCCCAACAACATACTTTCTCCCTTGCATCATGTGGCTTGCCATCTATAAACCCAAGAAGTTCAGC TTCTCTTGGATAGCAAATTGGGTCTGCATTGTGCTTGGAATTTTGCTGATGATATTGTCACCCATTGGTGCCCTAAGACATATCATCCTTACAGCCAAAG ACTACGAGTTCTTCTCATGA
AA sequence Show only first row Show all	>Potri.010G055800.1 pacid=42798786 polypeptide=Potri.010G055800.1.p locus=Potri.010G055800 ID=Potri.010G055800.1.v4.1 annot-version=v4.1 MPSNESQNDEAAREKAINDWLPVTSSRNAKWWYSTFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILFLSWVITLYTLWQMVEMHEMVPGKRFDRYHELGQ HAFGEKLGLWIVVPQQLVVQVGVNIVYMVTGGKSLKKFHDLVCSDCKDIRLTYFIMIFASLQFVLAHLPNLNSISVISLAAAVMSLSYSTIAWGATLNKG VQPDVDYSYKASTKTGAVFDFFSALGDIAFAYAGHNVILEIQATIPSTPEKPSKKPMWRGAFLAYVVVAICYFPVALIGYWFFGNSVEDNILISLEKPAW LIATANMFVVIHVIGSYQIYAMAVFDMLETALVKKLHFSPSFMLRFVTRTVYVGFTMIVGICIPFFGGLLSFFGGFAFAPTTYFLPCIMWLAIYKPKKFS FSWIANWVCIVLGILLMILSPIGALRHIILTAKDYEFFS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G40780		LHT1, LTH1	lysine histidine transporter 1...		Potri.010G055800 [exp]	0	1
AT2G39800		ATP5CS, P5CS1	delta1-pyrroline-5-carboxylate...		Potri.008G060200 [exp]	3.46	0.8582
AT5G53040		GRD, RKD4	RWP-RK domain-containing 4, GR...		Potri.015G011800 [exp]	4.58	0.9300
AT3G23250	MYB	ATMYB15, ATY19	myb domain protein 15 (.1.2)		Potri.011G040200 [exp]	9.89	0.8429
AT1G32700			PLATZ transcription factor fam...		Potri.005G130300 [exp]	20.85	0.8363
					Potri.018G060100 [exp]	21.54	0.8362
					Potri.006G119250 [exp]	35.79	0.8804
AT5G38760			Late embryogenesis abundant pr...		Potri.004G107600 [exp]	38.98	0.8000
AT2G33690			Late embryogenesis abundant pr...		Potri.005G145200 [exp]	41.78	0.8742
AT3G19620			Glycosyl hydrolase family prot...		Potri.007G114300 [exp]	51.38	0.7282
AT5G05800			unknown protein		Potri.004G097601 [exp]	57.70	0.7619

Compare expression of checked genes

Potri.010G055800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.