Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76340 556 / 0 GONST3 golgi nucleotide sugar transporter 3 (.1) AT5G19980 291 / 8e-97 GONST4 golgi nucleotide sugar transporter 4 (.1) AT2G13650 62 / 2e-10 GONST1 golgi nucleotide sugar transporter 1 (.1.2.3) AT4G09810 47 / 1e-05 Nucleotide-sugar transporter family protein (.1) AT1G07290 47 / 2e-05 GONST2 golgi nucleotide sugar transporter 2 (.1) AT1G21070 45 / 4e-05 Nucleotide-sugar transporter family protein (.1) AT1G34020 42 / 0.0004 Nucleotide-sugar transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G177700 [exp] 672 / 0 AT1G76340 540 / 0.0 golgi nucleotide sugar transporter 3 (.1) Potri.018G071700 [exp] 314 / 1e-105 AT5G19980 484 / 6e-173 golgi nucleotide sugar transporter 4 (.1) Potri.007G106400 [exp] 63 / 7e-11 AT2G13650 513 / 0.0 golgi nucleotide sugar transporter 1 (.1.2.3) Potri.005G062900 [exp] 63 / 9e-11 AT2G13650 534 / 0.0 golgi nucleotide sugar transporter 1 (.1.2.3) Potri.009G044000 [exp] 45 / 5e-05 AT1G07290 472 / 5e-167 golgi nucleotide sugar transporter 2 (.1) Potri.005G260300 [exp] 45 / 5e-05 AT1G21070 510 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.005G196500 [exp] 42 / 0.0005 AT4G09810 543 / 0.0 Nucleotide-sugar transporter family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037000 [exp] 593 / 0 AT1G76340 549 / 0.0 golgi nucleotide sugar transporter 3 (.1) Lus10034672 [exp] 501 / 1e-178 AT1G76340 489 / 3e-174 golgi nucleotide sugar transporter 3 (.1) Lus10034674 [exp] 482 / 9e-172 AT1G76340 473 / 2e-168 golgi nucleotide sugar transporter 3 (.1) Lus10015806 [exp] 453 / 1e-160 AT1G76340 434 / 2e-153 golgi nucleotide sugar transporter 3 (.1) Lus10017141 [exp] 322 / 2e-108 AT5G19980 489 / 4e-175 golgi nucleotide sugar transporter 4 (.1) Lus10033058 [exp] 319 / 1e-107 AT5G19980 492 / 2e-176 golgi nucleotide sugar transporter 4 (.1) Lus10017759 [exp] 319 / 2e-107 AT5G19980 495 / 2e-177 golgi nucleotide sugar transporter 4 (.1) Lus10018311 [exp] 318 / 5e-107 AT5G19980 478 / 8e-171 golgi nucleotide sugar transporter 4 (.1) Lus10024126 [exp] 66 / 2e-11 AT2G13650 535 / 0.0 golgi nucleotide sugar transporter 1 (.1.2.3) Lus10001205 [exp] 54 / 7e-08 AT1G07290 465 / 4e-164 golgi nucleotide sugar transporter 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [poplar] [flax] DMT PF03151 [poplar] [flax] TPT Triose-phosphate Transporter family
Representative CDS sequence Show only first row Show all	>Potri.010G057600.1 pacid=42797739 polypeptide=Potri.010G057600.1.p locus=Potri.010G057600 ID=Potri.010G057600.1.v4.1 annot-version=v4.1 ATGTCTGCTGACATGGAGAACCCTAAAGCTGAAGAGGAACAGAAAGGTACAGGATCCGCCTCTCCTGCTAATGAAACCCCGGCAACCTGGTATAGTGGCT TACTCAAGCAAACATCCATCTATGGCATAGCTGCTGGATATTGCATCTCAGCATCCCTGCTCTCCATCATCAACAAGTGGGCCATCATGAAATTCCCTTA TCCTGGGGCACTAACTGCATTGCAGTATTTCACTAGCGCTGCAGGTGTACTTGTCTGTGGGTGGTGCAAGGTTTTAGAGCATGATTCGCTCGACCTTTTG ACCATGTGGCGGTTCCTACCTGCAGCCATTATGTTCTACCTGTCACTCTTTACAAACAGTGAGCTCTTATTGCATGCTAATGTTGATACCTTCATTGTCT TCCGTTCGTTAGTCCCCATCTTTGTTGCAATAGGAGAGACCTTGTTCCTACACCAGCCATGGCCATCATTGAAGACATGGTTGTCTCTTTCTACCATCTT TGGTGGAAGTGTGCTATATGTGCTAACAGATTATCAGTTTACAGTTATGGCTTACAGCTGGGCTCTAGCTTACTTGGTAAGCATGACTATAGATTTTGTC TATATCAAGCATGTTGTTATGACCATTGGTTTAAATACATGGGGTCTCGTGGTGTACAACAATCTTGAGGCCCTCCTACTCTTTCCGCTAGAATTGCTTA TAATGGGGGAGCTTAAGAAGATAAAGCATGAAATTTCAGATGAGTCGGATTGGCACTCATTTGCTGTGGTTTTGCCAGTTGGTTTGTCTTGTTTGTTTGG TTTAGCCATCTCTTTCTTTGGGTTTTCTTGCCGGAGAGCAATCTCTGCTACAGGATATACAGTTCTTGGTGTGGTGAACAAGTTGTTGACAGTTGTAATC AATCTGGTTATTTGGGACAAGCATTCAACATTCGTTGGGACAGTGGGACTTCTTATTTGTATGCTAGGTGGCATCATGTATCAACAGTCCACAAGCAAGC CTAAGGCTGTGCCTGAAGTAAAAGCAGAGCAAACCGATGAAGAACAACAGAAGCTACTAGAAATGCAAAGCAACAATAATGAGAAGGAAGTTACCCAGTC AAATCAGGGGAAATGA
AA sequence Show only first row Show all	>Potri.010G057600.1 pacid=42797739 polypeptide=Potri.010G057600.1.p locus=Potri.010G057600 ID=Potri.010G057600.1.v4.1 annot-version=v4.1 MSADMENPKAEEEQKGTGSASPANETPATWYSGLLKQTSIYGIAAGYCISASLLSIINKWAIMKFPYPGALTALQYFTSAAGVLVCGWCKVLEHDSLDLL TMWRFLPAAIMFYLSLFTNSELLLHANVDTFIVFRSLVPIFVAIGETLFLHQPWPSLKTWLSLSTIFGGSVLYVLTDYQFTVMAYSWALAYLVSMTIDFV YIKHVVMTIGLNTWGLVVYNNLEALLLFPLELLIMGELKKIKHEISDESDWHSFAVVLPVGLSCLFGLAISFFGFSCRRAISATGYTVLGVVNKLLTVVI NLVIWDKHSTFVGTVGLLICMLGGIMYQQSTSKPKAVPEVKAEQTDEEQQKLLEMQSNNNEKEVTQSNQGK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G76340		GONST3	golgi nucleotide sugar transpo...		Potri.010G057600 [exp]	0	1
AT1G50010		TUA2	tubulin alpha-2 chain (.1)		Potri.009G085100 [exp]	6.92	0.8945
AT4G27880			Protein with RING/U-box and TR...		Potri.015G013000 [exp]	10.58	0.8238
AT2G44160		MTHFR2	methylenetetrahydrofolate redu...		Potri.017G000300 [exp]	15.09	0.8703	Pt-MTHFR1.1,MTHFR2
AT4G15960			alpha/beta-Hydrolases superfam...		Potri.010G010800 [exp]	18.70	0.8676
AT5G03300		ADK2	adenosine kinase 2 (.1)		Potri.010G224300 [exp]	23.30	0.8843	ADK2.2
AT1G30820			CTP synthase family protein (....		Potri.003G157900 [exp]	23.49	0.7694
AT5G46860		SGR3, ATVAM3, A...	SHOOT GRAVITROPISM 3, ARABIDOP...		Potri.001G138500 [exp]	23.81	0.8438	Pt-SYP23.2
AT5G37680		ATARLA1A	ADP-ribosylation factor-like A...		Potri.004G086200 [exp]	25.78	0.8456
AT5G17770		CBR1, ATCBR	NADH:cytochrome B5 reductase 1...		Potri.013G067300 [exp]	27.56	0.8681
AT1G12500			Nucleotide-sugar transporter f...		Potri.003G118000 [exp]	27.92	0.8633

Compare expression of checked genes

Potri.010G057600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.