Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23230 84 / 1e-21 AP2_ERF ERF98 Integrase-type DNA-binding superfamily protein (.1) AT3G23220 72 / 2e-16 AP2_ERF ESE1 ethylene and salt inducible 1, Integrase-type DNA-binding superfamily protein (.1) AT5G43410 71 / 2e-16 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT1G06160 73 / 4e-16 AP2_ERF ORA59 octadecanoid-responsive Arabidopsis AP2/ERF 59 (.1) AT1G04370 67 / 4e-15 AP2_ERF ATERF14 Ethylene-responsive element binding factor 14 (.1) AT5G51190 69 / 5e-15 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT5G47220 69 / 6e-15 AP2_ERF ATERF-2, ERF2, ATERF2 ETHYLENE RESPONSE FACTOR- 2, ethylene responsive element binding factor 2 (.1) AT4G17500 69 / 8e-15 AP2_ERF ATERF-1, AtERF1 ethylene responsive element binding factor 1 (.1) AT5G61600 69 / 8e-15 AP2_ERF ERF104 ethylene response factor 104 (.1) AT5G47230 69 / 1e-14 AP2_ERF ATERF5, ATERF-5, ERF5 ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR- 5, ethylene responsive element binding factor 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G166100 [exp] 122 / 2e-36 AT3G23230 82 / 2e-20 Integrase-type DNA-binding superfamily protein (.1) Potri.002G039200 [exp] 85 / 8e-22 AT3G23230 113 / 7e-33 Integrase-type DNA-binding superfamily protein (.1) Potri.005G223100 [exp] 82 / 1e-20 AT3G23230 101 / 2e-28 Integrase-type DNA-binding superfamily protein (.1) Potri.010G072600 [exp] 79 / 3e-19 AT3G23220 91 / 4e-24 ethylene and salt inducible 1, Integrase-type DNA-binding superfamily protein (.1) Potri.002G039300 [exp] 75 / 1e-17 AT3G23220 82 / 2e-20 ethylene and salt inducible 1, Integrase-type DNA-binding superfamily protein (.1) Potri.008G166000 [exp] 73 / 3e-17 AT3G23230 94 / 3e-25 Integrase-type DNA-binding superfamily protein (.1) Potri.003G151000 [exp] 73 / 2e-16 AT5G07580 164 / 6e-50 Integrase-type DNA-binding superfamily protein (.1) Potri.001G079600 [exp] 72 / 6e-16 AT5G07580 145 / 1e-42 Integrase-type DNA-binding superfamily protein (.1) Potri.003G150800 [exp] 72 / 1e-15 AT5G51190 185 / 7e-58 Integrase-type DNA-binding superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021873 [exp] 88 / 1e-22 AT3G23230 143 / 4e-44 Integrase-type DNA-binding superfamily protein (.1) Lus10011830 [exp] 80 / 2e-19 AT3G23230 134 / 4e-41 Integrase-type DNA-binding superfamily protein (.1) Lus10022936 [exp] 77 / 1e-18 AT3G23230 114 / 9e-34 Integrase-type DNA-binding superfamily protein (.1) Lus10024883 [exp] 77 / 2e-18 AT3G23230 130 / 3e-39 Integrase-type DNA-binding superfamily protein (.1) Lus10004752 [exp] 76 / 3e-17 AT5G07580 122 / 4e-34 Integrase-type DNA-binding superfamily protein (.1) Lus10033884 [exp] 73 / 3e-17 AT3G23230 125 / 9e-38 Integrase-type DNA-binding superfamily protein (.1) Lus10007841 [exp] 76 / 4e-17 AT5G47230 121 / 4e-33 ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR- 5, ethylene responsive element binding factor 5 (.1) Lus10021196 [exp] 71 / 3e-16 AT3G23230 131 / 3e-40 Integrase-type DNA-binding superfamily protein (.1) Lus10011831 [exp] 71 / 3e-16 AT3G23230 132 / 2e-40 Integrase-type DNA-binding superfamily protein (.1) Lus10032499 [exp] 72 / 1e-15 AT5G51190 186 / 8e-59 Integrase-type DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [poplar] [flax] MBD-like PF00847 [poplar] [flax] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Potri.010G072400.1 pacid=42799739 polypeptide=Potri.010G072400.1.p locus=Potri.010G072400 ID=Potri.010G072400.1.v4.1 annot-version=v4.1 ATGGAAGAGCCTGATAAAGGGAAGGAAAAGGAATTGAAAGGGAGAGAAGAGGTTCGATACCGGGGTGTTCGAAGGAGACCTTGGGGAAAATTTGCGGCGG AAATACGAGACCCATCAAGGCAGGGAGCAAGGTTATGGTTAGGGACATTTGATACGGCAGAGGAGGCAGCTCGTGCTTATGATAGAGCTGCATTTAGCAT GAGAGGTCATCTTGCAATCCTCAACTTTCCTAATGATTATCTCTCTCAAGCGATAGGATCTTCTCCTCGTCGTCCACCAGTTTCATCATCTAGTAGTGAT GTTGGTGCAAGCGAGAGTTTTCAGAGGGGAAGCTCATCAAGTGCCGGACAAGGAAAGCAAGTTATCGAGTTTGAGTACTTGGATGATAAGATTTTGGAGG AGCTTCTTGAAACAGAAGAGGAGAAGAAGAAACGGCAGCAAGATTGA
AA sequence Show only first row Show all	>Potri.010G072400.1 pacid=42799739 polypeptide=Potri.010G072400.1.p locus=Potri.010G072400 ID=Potri.010G072400.1.v4.1 annot-version=v4.1 MEEPDKGKEKELKGREEVRYRGVRRRPWGKFAAEIRDPSRQGARLWLGTFDTAEEAARAYDRAAFSMRGHLAILNFPNDYLSQAIGSSPRRPPVSSSSSD VGASESFQRGSSSSAGQGKQVIEFEYLDDKILEELLETEEEKKKRQQD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G23230	AP2_ERF	ERF98	Integrase-type DNA-binding sup...		Potri.010G072400 [exp]	0	1
AT5G10830			S-adenosyl-L-methionine-depend...		Potri.005G066200 [exp]	1.00	0.8223
AT3G48140			B12D protein (.1)		Potri.008G179401 [exp]	2.23	0.7660
AT3G23220	AP2_ERF	ESE1	ethylene and salt inducible 1,...		Potri.010G072600 [exp]	2.44	0.8115
AT3G23240	AP2_ERF	ERF1, ATERF1	ethylene response factor 1 (.1...		Potri.010G072300 [exp]	4.58	0.7997	Pt-ERF1.2,ERF33
AT3G61440		ATCYSC1, ARATH;...	BETA-SUBSTITUTED ALA SYNTHASE ...		Potri.014G086300 [exp]	4.89	0.7507
AT2G29060	GRAS		GRAS family transcription fact...		Potri.001G242000 [exp]	5.29	0.7941
AT2G03800		GEK1	GEKO1, D-aminoacyl-tRNA deacyl...		Potri.015G048700 [exp]	6.63	0.6766
AT2G01300			unknown protein		Potri.004G093000 [exp]	10.95	0.6914
AT3G16640		TCTP	translationally controlled tum...		Potri.005G024800 [exp]	13.78	0.7113	Pt-TCTP.1
AT3G15760			unknown protein		Potri.018G131100 [exp]	14.07	0.6831

Compare expression of checked genes

Potri.010G072400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.