Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51895 997 / 0 AST12, ATST1, SULTR3;1 sulfate transporter 3;1 (.1) AT4G02700 884 / 0 SULTR3;2, AST77 sulfate transporter 3;2 (.1) AT3G15990 739 / 0 SULTR3;4 sulfate transporter 3;4 (.1) AT1G23090 736 / 0 SULTR3;3, AST91 sulfate transporter 91 (.1) AT5G19600 699 / 0 SULTR3;5 sulfate transporter 3;5 (.1) AT4G08620 695 / 0 SULTR1.2, SULTR1;1 sulphate transporter 1;1 (.1) AT1G22150 685 / 0 SULTR1;3 sulfate transporter 1;3 (.1) AT1G78000 685 / 0 SEL1, SULTR1;2 SELENATE RESISTANT 1, sulfate transporter 1;2 (.1.2) AT5G10180 593 / 0 SULTR2;1, AST68 sulfate transporter 2;1, ARABIDOPSIS SULFATE TRANSPORTER 68, slufate transporter 2;1 (.1) AT1G77990 582 / 0 SULTR2;2, AST56 SULPHATE TRANSPORTER 2;2, STAS domain / Sulfate transporter family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G156600 [exp] 1213 / 0 AT3G51895 949 / 0.0 sulfate transporter 3;1 (.1) Potri.005G213500 [exp] 1043 / 0 AT3G51895 1040 / 0.0 sulfate transporter 3;1 (.1) Potri.002G049500 [exp] 1009 / 0 AT3G51895 1028 / 0.0 sulfate transporter 3;1 (.1) Potri.010G111700 [exp] 746 / 0 AT1G23090 1028 / 0.0 sulfate transporter 91 (.1) Potri.001G179400 [exp] 738 / 0 AT3G15990 990 / 0.0 sulfate transporter 3;4 (.1) Potri.003G056200 [exp] 736 / 0 AT3G15990 976 / 0.0 sulfate transporter 3;4 (.1) Potri.005G167300 [exp] 734 / 0 AT1G22150 996 / 0.0 sulfate transporter 1;3 (.1) Potri.008G130400 [exp] 725 / 0 AT1G23090 998 / 0.0 sulfate transporter 91 (.1) Potri.006G158900 [exp] 722 / 0 AT5G19600 789 / 0.0 sulfate transporter 3;5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006612 [exp] 1064 / 0 AT3G51895 966 / 0.0 sulfate transporter 3;1 (.1) Lus10039364 [exp] 1045 / 0 AT3G51895 966 / 0.0 sulfate transporter 3;1 (.1) Lus10034603 [exp] 729 / 0 AT1G23090 953 / 0.0 sulfate transporter 91 (.1) Lus10025766 [exp] 724 / 0 AT3G15990 1012 / 0.0 sulfate transporter 3;4 (.1) Lus10035897 [exp] 723 / 0 AT3G15990 1014 / 0.0 sulfate transporter 3;4 (.1) Lus10014706 [exp] 714 / 0 AT3G51895 804 / 0.0 sulfate transporter 3;1 (.1) Lus10025767 [exp] 707 / 0 AT3G15990 947 / 0.0 sulfate transporter 3;4 (.1) Lus10029616 [exp] 701 / 0 AT1G22150 973 / 0.0 sulfate transporter 1;3 (.1) Lus10041111 [exp] 701 / 0 AT1G22150 1001 / 0.0 sulfate transporter 1;3 (.1) Lus10036437 [exp] 689 / 0 AT1G22150 991 / 0.0 sulfate transporter 1;3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [poplar] [flax] APC PF00916 [poplar] [flax] Sulfate_transp Sulfate permease family CL0502 [poplar] [flax] STAS PF01740 [poplar] [flax] STAS STAS domain
Representative CDS sequence Show only first row Show all	>Potri.010G082700.1 pacid=42798007 polypeptide=Potri.010G082700.1.p locus=Potri.010G082700 ID=Potri.010G082700.1.v4.1 annot-version=v4.1 ATGGGTAATGATTACTACTATGAATGCCCACATCCCGTGGCAATTCCTCCAGCAAAACCATTCATTGAGTCAATAAAATCGGGTATCAAGGAGACTCTTT TCCCTGATGACCCTTTTAGGCAATTCAAGAATCAGCCAGCATCTAGGAAATTCATTTTGGGATTGCAGTACTTTGTACCTGTCCTGGAATGGGCTCCTCG TTACACCTTCGAGTTCTTCAAAGCTGATCTAATAGCTGGAATTACTATTGCCAGTCTAGCAGTTCCTCAAGGGATAAGTTATGCAAGTCTTGCTAACTTA CCTCCAATCCTTGGACTATATTCAAGCTTTGTGCCACCTTTGGTGTATGCCATGTTGGGGAGTTCAAAAGATTTGGCCGTGGGTACAGTAGCTGTGGCAT CACTTCTCATATCTTCCATGTTAGGGAAGGAGGTTAACCCTAATGAGAACCCTAAGCTCTATGTTCAGTTAGCTTTAACCGCTACCTTTTTTGCTGGAGT TTTCCAAGCTGCTCTTGGCTTTTTAAGGCTTGGGTTTATTGTGGACTTTTTGTCCCATGCAACAATAGTGGGTTTCATGGGAGGGGCTGCCACGGTTGTT TGCCTTCAGCAACTTAAAGGGATCCTTGGGTTAGTTCGTTTCACTCATGGGACTGATCTTGTATCGGTTATGCGTTCAGTCTTTAGCCAAGCACACCAGT GGAGATGGGAAAGTGGCGTCTTGGGTTGTTGTTTTCTCTTCTTCCTCATTCTCACAAGATACGTTAGCAAGAGAAAGCCAGGCTTCTTTTGGATAAGTGC GATGGCACCCCTGACATCTGTTATCGTCGGGAGTGTTCTTGCTTATTTGACCCACGCTGAGCAAAACGGAGTTCAAGTGATCGGGCACCTGAAGAAGGGA TTGAATCCGCCATCTGTGTCTGAGTTGGCTTTTGGATCTCCATATCTGATGACAGCTATTAAAACTGGAATCATAACTGGTGTCATAGCTCTTGCTGAAG GAGTAGCTGTTGGGAGGAGCTTTGCCATGTTCAAGAATTATCATATTGACGGAAACAAAGAGATGATTGCTTTTGGGATGATGAATATTGCAGGCTCTTG CACCTCCTGTTATCTCACCACAGGACCATTTTCGCGAACTGCGGTGAATTTCAATGCAGGGTGCAAAACTGCAGTCTCTAACATAGTCATGGCAACAGCT GTGATGATCACGTTGCTATTTCTAACACCTTTGTTCCATTATACCCCCCTAGTGGTTCTCTCCTCCATTATCATTGCTGCAATGCTCGGCCTAATTGATT ATGAAGCTGCAATTAGCCTCTGGAAAGTTGATAAGTGTGACTTCATTGTTTGCATGAGTGCATATTTTGGTGTTGTCTTTGGCAGTGTGGAAATTGGCTT GGTCATTGCTGTCGTAATTTCTTTGCTAAGGATGCTCATGTCTGTAGCAAGGCCAAGGACTTTTCTTTTAGGCAACATTCCCAACTCCATGATTTACAGA AGCATAGACCAATACCCAATTGCAAACAATGTTCCAGGAGTTCTCATTCTCCAGATTGATGCACCAGTCTACTTTGCCAACGCAAACTACTTGAGAGAAA GGATATCAAGATGGATATATGAGGAGGAAGAAAAGCTAAAATCCACAGGAGGATCAAGCTTACAGTATGTGATACTAGATCTGAGTGCTGTCGGCAGCAT AGATACAAGTGGGATCAGTATGCTTGAAGAAGTAAAGAAAAACATTGATAGAAGAGATCTCAAGCTCGTACTGGCGAACCCAAGAAGTGAGGTGATTAAG AAGCTAGAGAAGTCAAAGTTCATGGAAAGCATTGGTCAGGAATGGATCTATCTTACAGTAGGCGAGGCTGTGGCAGCATGCAATTTTATGCTACATAGAA GCAAATCATCAAATAATCCTGCCACAGAAAAAGTTGAGCTTGACGCACACGATAATGTCTGA
AA sequence Show only first row Show all	>Potri.010G082700.1 pacid=42798007 polypeptide=Potri.010G082700.1.p locus=Potri.010G082700 ID=Potri.010G082700.1.v4.1 annot-version=v4.1 MGNDYYYECPHPVAIPPAKPFIESIKSGIKETLFPDDPFRQFKNQPASRKFILGLQYFVPVLEWAPRYTFEFFKADLIAGITIASLAVPQGISYASLANL PPILGLYSSFVPPLVYAMLGSSKDLAVGTVAVASLLISSMLGKEVNPNENPKLYVQLALTATFFAGVFQAALGFLRLGFIVDFLSHATIVGFMGGAATVV CLQQLKGILGLVRFTHGTDLVSVMRSVFSQAHQWRWESGVLGCCFLFFLILTRYVSKRKPGFFWISAMAPLTSVIVGSVLAYLTHAEQNGVQVIGHLKKG LNPPSVSELAFGSPYLMTAIKTGIITGVIALAEGVAVGRSFAMFKNYHIDGNKEMIAFGMMNIAGSCTSCYLTTGPFSRTAVNFNAGCKTAVSNIVMATA VMITLLFLTPLFHYTPLVVLSSIIIAAMLGLIDYEAAISLWKVDKCDFIVCMSAYFGVVFGSVEIGLVIAVVISLLRMLMSVARPRTFLLGNIPNSMIYR SIDQYPIANNVPGVLILQIDAPVYFANANYLRERISRWIYEEEEKLKSTGGSSLQYVILDLSAVGSIDTSGISMLEEVKKNIDRRDLKLVLANPRSEVIK KLEKSKFMESIGQEWIYLTVGEAVAACNFMLHRSKSSNNPATEKVELDAHDNV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G51895		AST12, ATST1, S...	sulfate transporter 3;1 (.1)		Potri.010G082700 [exp]	0	1
AT1G64570		DUO3	DUO POLLEN 3, Homeodomain-like...		Potri.004G015034 [exp]	1.41	0.8635
AT1G49000			unknown protein		Potri.012G059500 [exp]	7.34	0.8181
AT1G49230			RING/U-box superfamily protein...		Potri.019G010500 [exp]	7.48	0.8126
AT3G20640	bHLH	bHLH123	basic helix-loop-helix (bHLH) ...		Potri.001G410600 [exp]	8.24	0.8332
					Potri.016G132101 [exp]	9.48	0.6977
AT1G64570		DUO3	DUO POLLEN 3, Homeodomain-like...		Potri.004G015001 [exp]	12.00	0.7438
AT5G08510			Pentatricopeptide repeat (PPR)...		Potri.013G010150 [exp]	12.32	0.8185
AT4G02810		FAF1	FANTASTIC FOUR 1, Protein of u...		Potri.002G053400 [exp]	14.07	0.8278
AT5G23960		ATTPS21	terpene synthase 21 (.1.2)		Potri.019G045100 [exp]	22.24	0.8100
AT5G23960		ATTPS21	terpene synthase 21 (.1.2)		Potri.019G045300 [exp]	23.68	0.8026

Compare expression of checked genes

Potri.010G082700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.