Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	KUP6.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70300 1228 / 0 KUP6 K+ uptake permease 6, K+ uptake permease 6 (.1) AT5G14880 1170 / 0 Potassium transporter family protein (.1) AT2G40540 1003 / 0 ATKUP2, ATKT2, TRK2, SHY3, KT2 potassium transporter 2 (.1.2) AT3G02050 790 / 0 ATKT4, ATKUP3, KUP3 K+ uptake transporter 3, ARABIDOPSIS THALIANA POTASSIUM TRANSPORTER 4, K+ uptake transporter 3 (.1) AT2G30070 758 / 0 ATKUP1, ATKT1P, ATKT1 POTASSIUM UPTAKE TRANSPORTER 1, potassium transporter 1 (.1) AT4G23640 739 / 0 ATKT3, KUP4, TRH1 TINY ROOT HAIR 1, Potassium transporter family protein (.1) AT1G60160 671 / 0 Potassium transporter family protein (.1) AT2G35060 668 / 0 KUP11 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2) AT1G31120 659 / 0 KUP10 K+ uptake permease 10, K+ uptake permease 10 (.1) AT4G19960 631 / 0 KT9, HAK9, ATKUP9 K+ uptake permease 9, K+ uptake permease 9 (.1), K+ uptake permease 9 (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G147400 [exp] 1487 / 0 AT1G70300 1221 / 0.0 K+ uptake permease 6, K+ uptake permease 6 (.1) Potri.019G056500 [exp] 1023 / 0 AT2G40540 1272 / 0.0 potassium transporter 2 (.1.2) Potri.013G083400 [exp] 1008 / 0 AT2G40540 1225 / 0.0 potassium transporter 2 (.1.2) Potri.014G144900 [exp] 884 / 0 AT3G02050 1175 / 0.0 K+ uptake transporter 3, ARABIDOPSIS THALIANA POTASSIUM TRANSPORTER 4, K+ uptake transporter 3 (.1) Potri.002G237500 [exp] 863 / 0 AT3G02050 1179 / 0.0 K+ uptake transporter 3, ARABIDOPSIS THALIANA POTASSIUM TRANSPORTER 4, K+ uptake transporter 3 (.1) Potri.009G073500 [exp] 811 / 0 AT2G30070 1092 / 0.0 POTASSIUM UPTAKE TRANSPORTER 1, potassium transporter 1 (.1) Potri.003G148200 [exp] 786 / 0 AT2G30070 831 / 0.0 POTASSIUM UPTAKE TRANSPORTER 1, potassium transporter 1 (.1) Potri.005G095900 [exp] 769 / 0 AT2G30070 769 / 0.0 POTASSIUM UPTAKE TRANSPORTER 1, potassium transporter 1 (.1) Potri.003G133900 [exp] 753 / 0 AT4G23640 947 / 0.0 TINY ROOT HAIR 1, Potassium transporter family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030857 [exp] 1314 / 0 AT1G70300 1249 / 0.0 K+ uptake permease 6, K+ uptake permease 6 (.1) Lus10030632 [exp] 1310 / 0 AT1G70300 1238 / 0.0 K+ uptake permease 6, K+ uptake permease 6 (.1) Lus10012992 [exp] 1210 / 0 AT1G70300 1188 / 0.0 K+ uptake permease 6, K+ uptake permease 6 (.1) Lus10014531 [exp] 1058 / 0 AT5G14880 1098 / 0.0 Potassium transporter family protein (.1) Lus10030539 [exp] 968 / 0 AT2G40540 1245 / 0.0 potassium transporter 2 (.1.2) Lus10034215 [exp] 958 / 0 AT2G40540 1239 / 0.0 potassium transporter 2 (.1.2) Lus10018324 [exp] 669 / 0 AT2G35060 1212 / 0.0 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2) Lus10013304 [exp] 646 / 0 AT4G13420 950 / 0.0 high affinity K+ transporter 5, ARABIDOPSIS THALIANA HIGH AFFINITY K+ TRANSPORTER 5, high affinity K+ transporter 5 (.1) Lus10038361 [exp] 643 / 0 AT2G35060 1164 / 0.0 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2) Lus10036221 [exp] 628 / 0 AT2G35060 1173 / 0.0 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [poplar] [flax] APC PF02705 [poplar] [flax] K_trans K+ potassium transporter
Representative CDS sequence Show only first row Show all	>Potri.010G094300.1 pacid=42799024 polypeptide=Potri.010G094300.1.p locus=Potri.010G094300 ID=Potri.010G094300.1.v4.1 annot-version=v4.1 ATGGATCTGGAATCTGGGGTTTTTCAAAACCATGTGAAGAAAGAATCATGGAAGACAGTGTTAACTTTGGCATATCAAAGTCTAGGAGTTGTGTATGGAG ATTTAAGTACTTCGCCGCTGTATGTGTACAAGAGCACGTTTGCTGAAGATATTCAACATTCTGAGACAAATGAAGAGATTTATGGCGTGCTCTCTTTTGT TTTCTGGACCCTCACCTTGGTCCCTTTGTTAAAATACGTGTTTATAGTGTTAAAAGCTGATGATAATGGTGAAGGAGGTACTTTTGCTCTCTACTCCTTG CTGTGTCGACATGCCCGAATCAACTCACTCCCCAATTGCCAGGTGGCTGATGAAGAGCTCTATGAGTACAAGAAGGATGCTGCTAATACTTGTTTGACCC CAACAACTGCTTTTGGATTAAGATTGAAATCTACTCTCGAGAAGCACAGGGTGTTGCAGAGGTTCTTGCTTTTGTTGGCTTTGATTGGGACTTGTATGGT CATTGGTGATGGTGTCCTTACCCCTGCGCTTTCTGTTTTCTCTGCGGTTTCTGGCCTTGAGCTTTCCATGGCAAAAGAGCATCACAAATATGTGGAAGTT CCAGTTGCGTGCACCATACTCATTTGCTTGTTTGCCCTTCAGCATTATGGCACCCACAGGGTTGGGTTCTTGTTTGCACCAGTTGTTCTCATGTGGCTTT TGTGCATCAGTGCCATTGGGATATATAACATCATACACTGGAATCCTCATGTTTATCAAGCTCTATCACCCTACTACATGTACAAGTTTTTGAGGAAGAC TCAACGAGGAGGTTGGATGTCCTTGGGTGGGATTTTGTTATGTATAACAGGCTCAGAAGCTATGTTTGCTGATCTAGGACACTTTTCTCAATTATCAATC CAGATCGCTTTCACCTCCTTGGTTTATCCATCGTTGATTCTTGCATATATGGGACAAGCTGCGTACCTATCTCAGCATCATGTTATTGATAATGATTACC ATATTGGATTTTATGTGTCTGTTCCAGGTAAATTACGATGGCCAGTTTTAGTTATAGCCATCCTTGCTGCAGTAGTAGGAAGCCAAGCCATAATCACTGG AACATTCTCTATAATCAAACAGTGCTCTGCTCTGGGTTGCTTCCCAAGAGTCAAAATAGTTCACACATCATCCAAAATCCATGGTCAAATCTATATCCCA GAGATAAACTGGACTTTGATGCTGTTGTGCTTGGCTGTTACTATTGGTTTCAGGGACACAAAACGTCTGGGTAATGCCTCAGGTTTGGCAGTTATAACCG TCATGCTAGTTACTACATGCCTGATGTCTCTGGTTATCGTCTTATGTTGGCACAAGACTGTCTTCCTTGCAATATGCTTTGTATGCTTTTTTGGCACAAT TGAAGCTCTTTACTTCTCAGCTTCCCTCATAAAGTTCTTGGAAGGGGCCTGGGTCCCTATTGCCCTCTCATTCATATTCCTGATCGTTATGTGTGTGTGG CACTATGGTACACTCAAAGCATACGAATTTGATGTCCAAAACAAGGTCTCCATTAACTGGCTACTTAGCTTAGGTCCCAGCCTCGGTATTGTGCGTGTTC GAGGAATTGGCCTCATACACACGGAGCTGGTGTCTGGAATCCCAGCAATCTTCTCCCACTTCGTTACCAACCTTCCAGCATTCCACCAAGTCCTGGTCTT CCTCTGCATCAAATCTGTCCCTGTTCCACATGTTAGAGCCAAGGAACGGTTTCTAATAGGGCACATTGGCCCAAGAGAATACAGATTATATAGGTGCATT GTGCGGTATGGATATCGTGATGTTCACAAGGATGACATGGAGTTTGAGAAGGATCTTGTGTGTAGTATAGCAGAGTATATACGCACAGGGAACGCTGAGC CGAACGGTGCAAGGGATGAGATGGAGAGTGAAGATGACAAAATGACAGTAGTTGGAACATGTTGTACTCATACAGATGGAATCCAATTGAGGGAGGATGA TGTTGACAAAATAGAGTCAGCAGGCACCTCAGAGTTGAGGGAGATTAGGTCCCCACCTGTGATGCAACCTAGGAAAAGAGTTAGATTTATAGTACCAGAT AGCCCGAAGATTAACAGAGGTGCTAGGGAGGAGCTGCACGAACTTATGGAAGCTAGGGAAGCTGGGATTGCTTACATACTAGGGCATTGTTATGTTAGAG CCAAGCAAGGGTCTAGCATGCTGAAGAAGCTTGTAGTAAATTATGGGTACGAGTTTTTGAGGAGAAACAGCAGGGCACCGGCCTATGCACTAAGTGTACC ACATGCATCTACTCTGGAGGTGGGGATGGTATACCGTGTCTAA
AA sequence Show only first row Show all	>Potri.010G094300.1 pacid=42799024 polypeptide=Potri.010G094300.1.p locus=Potri.010G094300 ID=Potri.010G094300.1.v4.1 annot-version=v4.1 MDLESGVFQNHVKKESWKTVLTLAYQSLGVVYGDLSTSPLYVYKSTFAEDIQHSETNEEIYGVLSFVFWTLTLVPLLKYVFIVLKADDNGEGGTFALYSL LCRHARINSLPNCQVADEELYEYKKDAANTCLTPTTAFGLRLKSTLEKHRVLQRFLLLLALIGTCMVIGDGVLTPALSVFSAVSGLELSMAKEHHKYVEV PVACTILICLFALQHYGTHRVGFLFAPVVLMWLLCISAIGIYNIIHWNPHVYQALSPYYMYKFLRKTQRGGWMSLGGILLCITGSEAMFADLGHFSQLSI QIAFTSLVYPSLILAYMGQAAYLSQHHVIDNDYHIGFYVSVPGKLRWPVLVIAILAAVVGSQAIITGTFSIIKQCSALGCFPRVKIVHTSSKIHGQIYIP EINWTLMLLCLAVTIGFRDTKRLGNASGLAVITVMLVTTCLMSLVIVLCWHKTVFLAICFVCFFGTIEALYFSASLIKFLEGAWVPIALSFIFLIVMCVW HYGTLKAYEFDVQNKVSINWLLSLGPSLGIVRVRGIGLIHTELVSGIPAIFSHFVTNLPAFHQVLVFLCIKSVPVPHVRAKERFLIGHIGPREYRLYRCI VRYGYRDVHKDDMEFEKDLVCSIAEYIRTGNAEPNGARDEMESEDDKMTVVGTCCTHTDGIQLREDDVDKIESAGTSELREIRSPPVMQPRKRVRFIVPD SPKINRGAREELHELMEAREAGIAYILGHCYVRAKQGSSMLKKLVVNYGYEFLRRNSRAPAYALSVPHASTLEVGMVYRV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G70300		KUP6	K+ uptake permease 6, K+ uptak...		Potri.010G094300 [exp]	0	1	KUP6.2
AT2G30990			Protein of unknown function (D...		Potri.014G142800 [exp]	2.64	0.8940
AT3G04940		ATCYSD1	cysteine synthase D1 (.1)		Potri.005G048132 [exp]	7.14	0.8692
AT3G01470	HD	HD-ZIP-1, HAT5,...	HOMEODOMAIN PROTEIN FROM ARABI...		Potri.015G065400 [exp]	8.00	0.8651
AT4G09820	bHLH	BHLH42, TT8, bH...	TRANSPARENT TESTA 8, basic hel...		Potri.005G208600 [exp]	10.48	0.8716
AT3G22104			Phototropic-responsive NPH3 fa...		Potri.007G118800 [exp]	15.49	0.8361
AT5G20090			Uncharacterised protein family...		Potri.001G333902 [exp]	17.14	0.8510
AT2G37210		LOG3	LONELY GUY 3, lysine decarboxy...		Potri.002G024000 [exp]	22.00	0.8109
AT5G01720			RNI-like superfamily protein (...		Potri.016G128400 [exp]	22.58	0.8081
AT1G34370	C2H2ZnF	STOP1	sensitive to proton rhizotoxic...		Potri.013G114600 [exp]	24.55	0.8486
AT1G01360		PYL9, RCAR1	PYRABACTIN RESISTANCE 1-LIKE 9...		Potri.002G169400 [exp]	28.84	0.8149

Compare expression of checked genes

Potri.010G094300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.