Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G60160 1209 / 0 Potassium transporter family protein (.1) AT4G33530 841 / 0 KUP5 K+ uptake permease 5, K+ uptake permease 5 (.1) AT5G09400 841 / 0 KUP7 K+ uptake permease 7, K+ uptake permease 7 (.1) AT4G13420 647 / 0 HAK5, ATHAK5 high affinity K+ transporter 5, ARABIDOPSIS THALIANA HIGH AFFINITY K+ TRANSPORTER 5, high affinity K+ transporter 5 (.1) AT2G35060 638 / 0 KUP11 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2) AT1G31120 626 / 0 KUP10 K+ uptake permease 10, K+ uptake permease 10 (.1) AT2G40540 615 / 0 ATKUP2, ATKT2, TRK2, SHY3, KT2 potassium transporter 2 (.1.2) AT5G14880 605 / 0 Potassium transporter family protein (.1) AT4G19960 585 / 0 KT9, HAK9, ATKUP9 K+ uptake permease 9, K+ uptake permease 9 (.1), K+ uptake permease 9 (.2) AT1G70300 585 / 0 KUP6 K+ uptake permease 6, K+ uptake permease 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G023900 [exp] 872 / 0 AT5G09400 1120 / 0.0 K+ uptake permease 7, K+ uptake permease 7 (.1) Potri.001G205500 [exp] 844 / 0 AT5G09400 1081 / 0.0 K+ uptake permease 7, K+ uptake permease 7 (.1) Potri.008G147300 [exp] 702 / 0 AT1G60160 651 / 0.0 Potassium transporter family protein (.1) Potri.001G045200 [exp] 662 / 0 AT4G13420 978 / 0.0 high affinity K+ transporter 5, ARABIDOPSIS THALIANA HIGH AFFINITY K+ TRANSPORTER 5, high affinity K+ transporter 5 (.1) Potri.001G069650 [exp] 660 / 0 AT4G13420 951 / 0.0 high affinity K+ transporter 5, ARABIDOPSIS THALIANA HIGH AFFINITY K+ TRANSPORTER 5, high affinity K+ transporter 5 (.1) Potri.001G123800 [exp] 646 / 0 AT2G35060 1149 / 0.0 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2) Potri.003G109700 [exp] 645 / 0 AT2G35060 1155 / 0.0 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2) Potri.014G132500 [exp] 639 / 0 AT4G13420 852 / 0.0 high affinity K+ transporter 5, ARABIDOPSIS THALIANA HIGH AFFINITY K+ TRANSPORTER 5, high affinity K+ transporter 5 (.1) Potri.014G144900 [exp] 637 / 0 AT3G02050 1175 / 0.0 K+ uptake transporter 3, ARABIDOPSIS THALIANA POTASSIUM TRANSPORTER 4, K+ uptake transporter 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012993 [exp] 1214 / 0 AT1G60160 1237 / 0.0 Potassium transporter family protein (.1) Lus10003402 [exp] 865 / 0 AT5G09400 1296 / 0.0 K+ uptake permease 7, K+ uptake permease 7 (.1) Lus10036160 [exp] 840 / 0 AT5G09400 1204 / 0.0 K+ uptake permease 7, K+ uptake permease 7 (.1) Lus10027004 [exp] 650 / 0 AT4G13420 828 / 0.0 high affinity K+ transporter 5, ARABIDOPSIS THALIANA HIGH AFFINITY K+ TRANSPORTER 5, high affinity K+ transporter 5 (.1) Lus10030857 [exp] 647 / 0 AT1G70300 1249 / 0.0 K+ uptake permease 6, K+ uptake permease 6 (.1) Lus10025493 [exp] 647 / 0 AT4G13420 826 / 0.0 high affinity K+ transporter 5, ARABIDOPSIS THALIANA HIGH AFFINITY K+ TRANSPORTER 5, high affinity K+ transporter 5 (.1) Lus10030632 [exp] 636 / 0 AT1G70300 1238 / 0.0 K+ uptake permease 6, K+ uptake permease 6 (.1) Lus10013304 [exp] 633 / 0 AT4G13420 950 / 0.0 high affinity K+ transporter 5, ARABIDOPSIS THALIANA HIGH AFFINITY K+ TRANSPORTER 5, high affinity K+ transporter 5 (.1) Lus10018324 [exp] 630 / 0 AT2G35060 1212 / 0.0 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2) Lus10038361 [exp] 612 / 0 AT2G35060 1164 / 0.0 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [poplar] [flax] APC PF02705 [poplar] [flax] K_trans K+ potassium transporter
Representative CDS sequence Show only first row Show all	>Potri.010G094400.1 pacid=42799013 polypeptide=Potri.010G094400.1.p locus=Potri.010G094400 ID=Potri.010G094400.1.v4.1 annot-version=v4.1 ATGGAAGGAGATGATGATCGGATTGAAGAGAGCAGTGTGAGGTTGGTGGGTAGTAGTAACGATGGCATCGTTGATGGCGGTGGTGGTGGTGTTGGCGAGT CGAGGTGGGTGGATGGTAGTGAAGTTGACTCAGAGTCACCTCCTTGGTCTTTGCTTGACGAGAATGATAGCAGCCAAGGGTATGGATCTATGAGGAGGAG GCTGGTTAAGAAGCCCAAAAGCGTTGATTCTTTTGATGTTGAAGCCATGGAGATTGCTGGTGCTCATCACCACCACTCCAAGGACCTTTCAGTTTGGCAA AATCTTGCATTGGCCTTCCAGACACTGGGTGTGGTGTACGGTGACTTGGGTACAAGCCCTCTTTATGTCTTTACTGATGTTTTCAGTAAGGTGCCCATCA GGTCAGAAGTTGATGTCCTGGGAGCTTTATCCCTAGTTATTTACACAATTGCTCTCATTCCACTAGCAAAATATGTTTTTGTAGTGCTCAAAGCAAATGA TAACGGGGAAGGAGGAACATTTGCTCTGTATTCACTGATTTGCAGATATGCAAAGGTCAATATGCTGCCAAATCGACAGCCAGCTGATGAAAATATTTCA AGTTATAGGCTCAAATTACCAACTCCAGAACTGGAAAGGGCTTTAAACATAAAAGAAACTTTGGAGAAAAGATCATCCTTGAAAACAGTGCTTTTGCTTT TGGTTCTGACAGGAACTTCTATGGTCATAGGAGATGGTATTCTAACCCCCGCGATGTCAGTGATGTCTGCTGTGAGTGGTCTGCAAGGTGAAATATCCGG CTTTGGTACAAGTGCTGTGGTGGTTGTCTCAATCATAATCCTTTTGGGGATTTTCAGCATACAGCGGTTTGGAACTGGGAAGGTGGGTTTCATGTTTGCT CCTGTACTTGCTCTGTGGTTCTTTTCTCTGGGTGCTATTGGGATTTACAATCTAGTGAAGCATGATATCAGCGTCCTCAAAGCACTCAATCCAGCCTACA TCTATTTCTTCTTCAAGAAAAACAGCAGTGCTGCTTGGTCAGCTCTTGGTGGTTGCGTTCTGTGCATTACAGGAGCTGAAGCAATGTTTGCTGACTTAGG GCATTTTTCAGTGCAATCCATACAGATTGCCTTTACTTGTGTAGTGTTTCCCTGTCTTCTCTTGGCTTACATGGGCCAGGCTTCATATTTAATGAAATAT CCTGATTCTGCAAGCAGAATATTCTATGATTCTGTTCCAGAGAGCCTGTTCTGGCCAGTCTTTGTCATTGCCACACTTGCTGCCATGATTGCCAGCCAAG CAATGATATCTGCTACGTTTTCATGTGTTAAACAAGCAATGGCTCTTGGATGCTTCCCAAGGCTGAAGATTGTTCACACCTCAAGGAAGCTGATGGGCCA GATTTATATCCCTATCATCAATTATTTTCTAATGATAATGTGCATCATTGTGGTTTCCATCTTTCGAAGAACCACGGATATTGCCAATGCATATGGCATA GCTGAAGTTGGTGTGATGATTGTGAGCACCACGCTGGTCACACTTGTGATGCTACTAATTTGGCGGACCAACTTGTTTTTGGCTTTGTGTTTCCCGTTAG TGTTTGGATCTATTGAGCTCATTTACTTGTCTGCAGTTCTATCGAAAATCTTAGAGGGTGGGTGGCTTCCGCTTGCTTTTGCTACGTTCTTTCTATGTGT GATGTACACTTGGAATTATGGGAGCGTGTTGAAGTACCAGAGTGAGGTAAGAGAGAAGATTTCCATGGATTTTATGCTTGAGCTTGGCTCCACCCTTGGA ACTGTAAGAGTTCCAGGAATCGGATTGCTGTACAATGAGCTTGTCCAAGGTGTTCCCTCAATTTTTGGGCAGTTCCTGCTGAGCCTTCCAGCAATCCACT CTACTATAGTATTTGTTTGTATCAAGTATGTCCCTGTTCCAGTAGTTCCCCAAGAGGAAAGGTTTCTTTTCCGAAGAGTTTGTCCAAAGGACTACCATAT GTTCCGCTGCGTTGCCCGATATGGTTACAAAGATGTCAGAAAGGAAGGTCACCATGTGTTTGAGCAACTTTTGGTGGAAAGCCTTGAGAAGTTTCTGAGA AGAGAGGCTCAAGATCTTGCCATCGAGAGCAATTTGAACGAGTACTTTGATAATGTTTCCGAGAGGTCAAGGGATTCTGGAGCTGCAGGTGGTGATGGGA CAGATGAACTTAGGGTTCCTTTAATGCATGATCGAAGACTGGAAGACGCAGGAAGTTCTATTTCCGAAGAAACTTCCTCAGCATTTCCCTCTAGTGTTAT GTCCCTGGATGAAGACCCAAGTCTGGAGTATGAGCTTTCAGCACTTCGAGAAGCAATGGATTCGGGATTTACTTATTTACTGGCTCACGGGGATGTGAGG GCAAAGAAAAACTCTTTTTTCTTCAAGAAACTGGTTATTAACTACTTTTACGCATTCTTGAGGAAAAACTGTAGAGCCGGTGCTGCTAATATGAGTGTAC CCCACATGAATATCTTGCAAGTCGGGATGACATACATGGTCTAA
AA sequence Show only first row Show all	>Potri.010G094400.1 pacid=42799013 polypeptide=Potri.010G094400.1.p locus=Potri.010G094400 ID=Potri.010G094400.1.v4.1 annot-version=v4.1 MEGDDDRIEESSVRLVGSSNDGIVDGGGGGVGESRWVDGSEVDSESPPWSLLDENDSSQGYGSMRRRLVKKPKSVDSFDVEAMEIAGAHHHHSKDLSVWQ NLALAFQTLGVVYGDLGTSPLYVFTDVFSKVPIRSEVDVLGALSLVIYTIALIPLAKYVFVVLKANDNGEGGTFALYSLICRYAKVNMLPNRQPADENIS SYRLKLPTPELERALNIKETLEKRSSLKTVLLLLVLTGTSMVIGDGILTPAMSVMSAVSGLQGEISGFGTSAVVVVSIIILLGIFSIQRFGTGKVGFMFA PVLALWFFSLGAIGIYNLVKHDISVLKALNPAYIYFFFKKNSSAAWSALGGCVLCITGAEAMFADLGHFSVQSIQIAFTCVVFPCLLLAYMGQASYLMKY PDSASRIFYDSVPESLFWPVFVIATLAAMIASQAMISATFSCVKQAMALGCFPRLKIVHTSRKLMGQIYIPIINYFLMIMCIIVVSIFRRTTDIANAYGI AEVGVMIVSTTLVTLVMLLIWRTNLFLALCFPLVFGSIELIYLSAVLSKILEGGWLPLAFATFFLCVMYTWNYGSVLKYQSEVREKISMDFMLELGSTLG TVRVPGIGLLYNELVQGVPSIFGQFLLSLPAIHSTIVFVCIKYVPVPVVPQEERFLFRRVCPKDYHMFRCVARYGYKDVRKEGHHVFEQLLVESLEKFLR REAQDLAIESNLNEYFDNVSERSRDSGAAGGDGTDELRVPLMHDRRLEDAGSSISEETSSAFPSSVMSLDEDPSLEYELSALREAMDSGFTYLLAHGDVR AKKNSFFFKKLVINYFYAFLRKNCRAGAANMSVPHMNILQVGMTYMV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G60160			Potassium transporter family p...		Potri.010G094400 [exp]	0	1
AT4G31860			Protein phosphatase 2C family ...		Potri.001G043000 [exp]	3.00	0.8564
AT4G34030		MCCB	3-methylcrotonyl-CoA carboxyla...		Potri.009G100800 [exp]	4.00	0.8582	Pt-MCCB.1
AT5G19150			pfkB-like carbohydrate kinase ...		Potri.008G203600 [exp]	7.00	0.8172
AT5G56550		ATOXS3	oxidative stress 3 (.1)		Potri.001G190700 [exp]	7.34	0.8761
AT5G52120		ATPP2-A14	phloem protein 2-A14 (.1)		Potri.012G136200 [exp]	12.12	0.8596
AT2G21070		FIO1	FIONA1, methyltransferases (.1...		Potri.004G172100 [exp]	14.07	0.8086
AT3G14470			NB-ARC domain-containing disea...		Potri.006G272066 [exp]	16.40	0.8827
AT5G17680			disease resistance protein (TI...		Potri.019G070565 [exp]	20.14	0.8795
AT1G52240		PIRF1, ATROPGEF...	phytochrome interacting RopGEF...		Potri.003G052800 [exp]	23.23	0.8278
AT2G23610		ATMES3	ARABIDOPSIS THALIANA METHYL ES...		Potri.007G036700 [exp]	24.24	0.8454

Compare expression of checked genes

Potri.010G094400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.