Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G60030 869 / 0 ATNAT7 ARABIDOPSIS NUCLEOBASE-ASCORBATE TRANSPORTER 7, nucleobase-ascorbate transporter 7 (.1) AT5G62890 865 / 0 Xanthine/uracil permease family protein (.1.2.3.4) AT5G49990 799 / 0 Xanthine/uracil permease family protein (.1) AT1G10540 793 / 0 ATNAT8 nucleobase-ascorbate transporter 8 (.1) AT2G34190 619 / 0 Xanthine/uracil permease family protein (.1) AT1G65550 612 / 0 Xanthine/uracil permease family protein (.1) AT1G49960 612 / 0 Xanthine/uracil permease family protein (.1) AT2G05760 560 / 0 Xanthine/uracil permease family protein (.1) AT2G26510 484 / 6e-167 PDE135 pigment defective embryo 135, Xanthine/uracil permease family protein (.1.2) AT5G25420 431 / 8e-148 Xanthine/uracil/vitamin C permease (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G146400 [exp] 970 / 0 AT1G60030 881 / 0.0 ARABIDOPSIS NUCLEOBASE-ASCORBATE TRANSPORTER 7, nucleobase-ascorbate transporter 7 (.1) Potri.015G072600 [exp] 853 / 0 AT5G62890 908 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4) Potri.012G077400 [exp] 848 / 0 AT5G62890 914 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4) Potri.009G086800 [exp] 648 / 0 AT1G49960 727 / 0.0 Xanthine/uracil permease family protein (.1) Potri.004G058800 [exp] 601 / 0 AT2G34190 927 / 0.0 Xanthine/uracil permease family protein (.1) Potri.011G068200 [exp] 599 / 0 AT2G34190 928 / 0.0 Xanthine/uracil permease family protein (.1) Potri.014G015100 [exp] 575 / 0 AT1G65550 559 / 0.0 Xanthine/uracil permease family protein (.1) Potri.014G157800 [exp] 574 / 0 AT2G05760 930 / 0.0 Xanthine/uracil permease family protein (.1) Potri.002G129400 [exp] 504 / 1e-174 AT2G26510 751 / 0.0 pigment defective embryo 135, Xanthine/uracil permease family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010707 [exp] 920 / 0 AT5G62890 916 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4) Lus10029191 [exp] 915 / 0 AT5G62890 914 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4) Lus10004228 [exp] 865 / 0 AT5G62890 972 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4) Lus10034125 [exp] 846 / 0 AT1G49960 944 / 0.0 Xanthine/uracil permease family protein (.1) Lus10042138 [exp] 827 / 0 AT5G62890 932 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4) Lus10043460 [exp] 796 / 0 AT5G62890 892 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4) Lus10033773 [exp] 605 / 0 AT1G49960 695 / 0.0 Xanthine/uracil permease family protein (.1) Lus10029238 [exp] 601 / 0 AT2G34190 926 / 0.0 Xanthine/uracil permease family protein (.1) Lus10036355 [exp] 600 / 0 AT1G65550 748 / 0.0 Xanthine/uracil permease family protein (.1) Lus10014777 [exp] 594 / 0 AT1G65550 751 / 0.0 Xanthine/uracil permease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [poplar] [flax] APC PF00860 [poplar] [flax] Xan_ur_permease Permease family
Representative CDS sequence Show only first row Show all	>Potri.010G095500.1 pacid=42797819 polypeptide=Potri.010G095500.1.p locus=Potri.010G095500 ID=Potri.010G095500.1.v4.1 annot-version=v4.1 ATGGCTGGAGGCGGAGGAGCCGCACCACCACCAAAACAGGAAGAGCTGCAGCCACATCCTGCTAAGGATCAGCTTCCAAATATTGCTTACTGCATTACCA GCCCTCCTCCTTGGCCTGAGGCAATTCTACTTGGCTTCCAACACTACTTGGTGATGCTTGGGACAACAGTGTTTATACCCACTGCTCTTGTTCCTCAGAT GGGGGGAAGAAATGAGGAAAAAGCGAAGATGATTCAAACATTGCTATTTGTGGCTGGATTAAATACATTTTTCCAAACATTTTTTGGTACTCGCCTGCCT GCAGTTATTGGAGGTTCCTTTAGCTATTTGCCTGCTACCATTTCAATCGTTTTGGCTGGTCGATATAGTGAAATTTTGGATCCTGTCGAGAGATTTGAAA AGACAATGCGTGGAATTCAAGGTGCGCTCATTGTTGCCTCAACTCTCCAGATTGTCGTGGGCTTCAGTGGCCTTTGGAGAAATGTTGCAAGGCTCTTGAG TCCATTATCTGCCGTTCCTTTGGTTGCTCTATCTGGATTTGGCCTCTATGAATTTGGTTTCCCTCTAGTTGCAAAATGTGTGGAGATTGGACTGCCACAG ATCATCTTTCTTTTAATTTTCTCGCAGTATATACCCCATTGGATACGAGGGGAGATGGCTGTGTTTAATCGGTTTGCTGTTATATTCTCTGTGGTCATTG TGTGGGTTTATGCTCACCTCCTTACCGTAAGTGGGGCATATAAGAATGCAGCACACCAAACCCAAACAAGCTGCCGAACTGACCGTGCAGGAATTATAGG TGCTGCTCCTTGGATAAGAGTTCCATACCCTTTCCAATGGGGAGCTCCTACTTTTGATGCTGGAGAGGCTTTTGCAATGATGGCTACTTCATTTGTTGCA CTAGTAGAGTCCACTGGTGCCTTCATTGCTGTATCTAGGTATGCGAGTGCAACTCCACTTCCACCTTCTATACTTAGCCGTGGTGTTGGTTGGCAGGGAG TCGGAATTCTCTTTTCAGGCATATTTGGAACTGGGAGTGGATCATCAGTATCTGTTGAAAATGCTGGATTGTTGGCACTGACACGTGTTGGCAGTCGAAG GGTTGTTCAAATATCAGCAGGGTTCATGATCTTCTTTTCCATTCTTGGAAAATTTGGAGCTGTTTTTGCTTCAATTCCATCTCCAATTATTGCAGCTTTA TATTGCCTTTTCTTTGCATACGTTGGTTCAGCAGGTCTCTCTTTCCTGCAGTTTTGCAACCTAAACAGCTTCAAAACGAAGTTTATACTTGGGTTCTCTG TTTTCATGGGCTTGTCGATACCACAATACTTCAATGAGTACACAGCAATTAAAGGTTATGGGCCCGTTCACACTGGCGCAAGATGGTTCAATGACATGAT CAATGTGCCATTCTCATCGGAACCTTTTGTTGCCGGCTTCTTAGCAATGTTCTTGGACGTCACGTTGCATAAAAAAGACACGGCAACTAGGAAGGATAGA GGGATGCACTGGTGGGACAGGTTCCGGTCGTTCAAGACAGACACAAGAAGTGAAGAATTCTATTCCTTGCCTTTCAACCTGAACAAGTTCTTCCCATCAG TGTGA
AA sequence Show only first row Show all	>Potri.010G095500.1 pacid=42797819 polypeptide=Potri.010G095500.1.p locus=Potri.010G095500 ID=Potri.010G095500.1.v4.1 annot-version=v4.1 MAGGGGAAPPPKQEELQPHPAKDQLPNIAYCITSPPPWPEAILLGFQHYLVMLGTTVFIPTALVPQMGGRNEEKAKMIQTLLFVAGLNTFFQTFFGTRLP AVIGGSFSYLPATISIVLAGRYSEILDPVERFEKTMRGIQGALIVASTLQIVVGFSGLWRNVARLLSPLSAVPLVALSGFGLYEFGFPLVAKCVEIGLPQ IIFLLIFSQYIPHWIRGEMAVFNRFAVIFSVVIVWVYAHLLTVSGAYKNAAHQTQTSCRTDRAGIIGAAPWIRVPYPFQWGAPTFDAGEAFAMMATSFVA LVESTGAFIAVSRYASATPLPPSILSRGVGWQGVGILFSGIFGTGSGSSVSVENAGLLALTRVGSRRVVQISAGFMIFFSILGKFGAVFASIPSPIIAAL YCLFFAYVGSAGLSFLQFCNLNSFKTKFILGFSVFMGLSIPQYFNEYTAIKGYGPVHTGARWFNDMINVPFSSEPFVAGFLAMFLDVTLHKKDTATRKDR GMHWWDRFRSFKTDTRSEEFYSLPFNLNKFFPSV

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G60030		ATNAT7	ARABIDOPSIS NUCLEOBASE-ASCORBA...		Potri.010G095500 [exp]	0	1
AT3G27027			Protein of unknown function (D...		Potri.017G064972 [exp]	5.74	0.9284
AT3G60720		PDLP8	plasmodesmata-located protein ...		Potri.014G067000 [exp]	6.48	0.9245
AT1G60030		ATNAT7	ARABIDOPSIS NUCLEOBASE-ASCORBA...		Potri.008G146400 [exp]	7.74	0.9273
AT3G49810			ARM repeat superfamily protein...		Potri.006G277700 [exp]	7.87	0.8727
AT3G26935			DHHC-type zinc finger family p...		Potri.001G070100 [exp]	9.59	0.8780
AT1G76040		CPK29	calcium-dependent protein kina...		Potri.002G017000 [exp]	10.19	0.9280
AT4G22290			Ubiquitin-specific protease fa...		Potri.011G022600 [exp]	11.13	0.8411
AT1G55790			Domain of unknown function (DU...		Potri.011G165600 [exp]	13.74	0.8726
AT5G42570			B-cell receptor-associated 31-...		Potri.011G089100 [exp]	14.49	0.9216
AT5G46700		TRN2, TET1	TORNADO 2, TETRASPANIN 1, Tetr...		Potri.003G093000 [exp]	15.00	0.8993

Compare expression of checked genes

Potri.010G095500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.