Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30070 498 / 7e-167 ATKUP1, ATKT1P, ATKT1 POTASSIUM UPTAKE TRANSPORTER 1, potassium transporter 1 (.1) AT5G14880 481 / 3e-159 Potassium transporter family protein (.1) AT4G13420 478 / 2e-158 HAK5, ATHAK5 high affinity K+ transporter 5, ARABIDOPSIS THALIANA HIGH AFFINITY K+ TRANSPORTER 5, high affinity K+ transporter 5 (.1) AT2G40540 464 / 1e-152 ATKUP2, ATKT2, TRK2, SHY3, KT2 potassium transporter 2 (.1.2) AT1G70300 462 / 2e-152 KUP6 K+ uptake permease 6, K+ uptake permease 6 (.1) AT3G02050 446 / 6e-146 ATKT4, ATKUP3, KUP3 K+ uptake transporter 3, ARABIDOPSIS THALIANA POTASSIUM TRANSPORTER 4, K+ uptake transporter 3 (.1) AT2G35060 439 / 4e-143 KUP11 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2) AT1G31120 431 / 5e-140 KUP10 K+ uptake permease 10, K+ uptake permease 10 (.1) AT1G60160 431 / 1e-139 Potassium transporter family protein (.1) AT4G19960 422 / 2e-136 KT9, HAK9, ATKUP9 K+ uptake permease 9, K+ uptake permease 9 (.1), K+ uptake permease 9 (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G140800 [exp] 1293 / 0 AT2G30070 491 / 3e-164 POTASSIUM UPTAKE TRANSPORTER 1, potassium transporter 1 (.1) Potri.003G148200 [exp] 504 / 7e-169 AT2G30070 831 / 0.0 POTASSIUM UPTAKE TRANSPORTER 1, potassium transporter 1 (.1) Potri.005G095900 [exp] 501 / 3e-168 AT2G30070 769 / 0.0 POTASSIUM UPTAKE TRANSPORTER 1, potassium transporter 1 (.1) Potri.014G144900 [exp] 488 / 6e-162 AT3G02050 1175 / 0.0 K+ uptake transporter 3, ARABIDOPSIS THALIANA POTASSIUM TRANSPORTER 4, K+ uptake transporter 3 (.1) Potri.014G132500 [exp] 487 / 9e-162 AT4G13420 852 / 0.0 high affinity K+ transporter 5, ARABIDOPSIS THALIANA HIGH AFFINITY K+ TRANSPORTER 5, high affinity K+ transporter 5 (.1) Potri.009G073500 [exp] 483 / 3e-160 AT2G30070 1092 / 0.0 POTASSIUM UPTAKE TRANSPORTER 1, potassium transporter 1 (.1) Potri.010G094300 [exp] 481 / 1e-159 AT1G70300 1228 / 0.0 K+ uptake permease 6, K+ uptake permease 6 (.1) Potri.019G056500 [exp] 480 / 5e-159 AT2G40540 1272 / 0.0 potassium transporter 2 (.1.2) Potri.008G147400 [exp] 474 / 1e-156 AT1G70300 1221 / 0.0 K+ uptake permease 6, K+ uptake permease 6 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027004 [exp] 488 / 4e-162 AT4G13420 828 / 0.0 high affinity K+ transporter 5, ARABIDOPSIS THALIANA HIGH AFFINITY K+ TRANSPORTER 5, high affinity K+ transporter 5 (.1) Lus10025493 [exp] 481 / 1e-159 AT4G13420 826 / 0.0 high affinity K+ transporter 5, ARABIDOPSIS THALIANA HIGH AFFINITY K+ TRANSPORTER 5, high affinity K+ transporter 5 (.1) Lus10030857 [exp] 468 / 2e-154 AT1G70300 1249 / 0.0 K+ uptake permease 6, K+ uptake permease 6 (.1) Lus10030632 [exp] 467 / 6e-154 AT1G70300 1238 / 0.0 K+ uptake permease 6, K+ uptake permease 6 (.1) Lus10030539 [exp] 462 / 4e-152 AT2G40540 1245 / 0.0 potassium transporter 2 (.1.2) Lus10013304 [exp] 453 / 1e-147 AT4G13420 950 / 0.0 high affinity K+ transporter 5, ARABIDOPSIS THALIANA HIGH AFFINITY K+ TRANSPORTER 5, high affinity K+ transporter 5 (.1) Lus10012992 [exp] 447 / 1e-146 AT1G70300 1188 / 0.0 K+ uptake permease 6, K+ uptake permease 6 (.1) Lus10018324 [exp] 448 / 2e-146 AT2G35060 1212 / 0.0 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2) Lus10034215 [exp] 447 / 4e-144 AT2G40540 1239 / 0.0 potassium transporter 2 (.1.2) Lus10012993 [exp] 437 / 1e-141 AT1G60160 1237 / 0.0 Potassium transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [poplar] [flax] APC PF02705 [poplar] [flax] K_trans K+ potassium transporter
Representative CDS sequence Show only first row Show all	>Potri.010G100800.1 pacid=42797490 polypeptide=Potri.010G100800.1.p locus=Potri.010G100800 ID=Potri.010G100800.1.v4.1 annot-version=v4.1 ATGTTAGGAGGAGGAGGAGGAGGGCAGGGTGGGTCTGGGCAGGAGTTGAGAGCGGCAGACTCAGCGGCAAATAAGAGGGAGTTTGTTGTAAATGTGGAGT CATCTAGTTCGAATCGCCACTCCCTTAATCTTCGCAACAGCGCCTTCTTCATCCCACCACCACCACTTACTATTACTACCGCTCACCCCGAGGAGAGGGG AAGATGGGAGACAGTGGTGCTAGCATACAAGACACTTGGAGTTGTCTTTGGAGGGCTTGTGACATCACCATTATATGTATATCCATCAATGCCATTGAAG TCTCCTACTGAACAGGACTATTTGGGAATCTATAGCATCATGTTTTGGACTCTCACACTCATCGGGGTTGTTAAATACACCAGTATAGCCCTTAAGGCTG ATGATCAGGGCGAAGGTGGAACATTTGCTCTGTACTCGTTGCTCTGTAGGAATATGAATATCGGTATCCTTTCCTCCAAACAAGCACAGACAAACTCAAG TTTATCTCACTCTGTCTTGCATGGAAGCACTGAGAATAAAAGCAGACTTGGAATTTTTTTTGAAAGAAGCATAGTTGCCAGGAGAGTACTACTTTTCATT GCCATGTTAGGCACATGCATGTTAATTGGGGATGGTATACTTACACCTGCAATCTCAGTGTTGTCAGCTATGGATGGAATAAGAGCACCTTTTCCTTCTG TCAGCAAATCTTTGGTGGAAGCACTTTCTGCAGGAGTTCTAGTTGTTTTGTTTCTGCTACAAAAGTTTGGCACCTCTAGAGTGAGTTTTATGTTTTCCCC AATAATGGGTGCGTGGACCTTGTGTACTCCATTAGTAGGGATTTATAGCATCATTCAGCATTACCCTAGCATATTCAAGGCTTTGTCACCTCACTACATA TTCCGCTTCTTTTGGAGAAATGGAAAGGAAGGCTGGCTGTTACTTGGAGGAACTGTTCTCTGTATCACAGGTTCTGAAGCACTGTTTGCGGATCTCGGTC ATTTTAACAGGAGCTCAATTCAGATCGCCTTTTTGCTCACAATATATCCATCACTTGTTCTGACATATGCGGGGCAAACTGCATACCTTATCAAGAACCC AAATGATCATGATGATGGATTTTACAAGTTTATACCTACAACAATTTATTGGCCGATCTTTATCATAGCCACCCTAGCTGCTGTTGTTGCAAGCCAGTCA TTGATATCAGCCACCTTCTCTGTCATCAAGCAATCCGTTGTTCTGGATTATTTCCCTAAAATTAAGGTGGTGCATACATCTTCTAACAAAGAGGGTGAAG TCTACTCCCCAGAAGTCAATTGCATTCTCATGATTCTTTGCGTTGCAGTGATACTTATTTTTGGAGATGGAAAGGATATCGGAAATGCTTTTGGTGTTGT TGTTAGTCTAGTGATGCTTATCACCACAATATTACTGACATTAGTTATGATCATGATATGGAGAACTCCGCCATGGCTGGTTGCAATTTACTTCTTCATA TTTTTTACGATGGAAGGGGTTTATGCCAGTGCTGTTTTGAGTAAAATACCTGAGGGTGGATGGATTCCTTTTGCCATTTCTTTTATCCTTGCTTTCATCA TGTTTGGCTGGTTCTATGGAAGGCAGAAGAAGATAGAGTATGAGTTGACTCACAAGATAGACTTGGGAAGACTGGGAATACTATTATCCGAGCCAGGTAT ACAGAGGGTTCCAGGATTTTGCTTCTTTTACACCAACATTCAAGATGGCCTGACGCCTATCCTTGGACATTATATTAAAAACATGAAATCTCTACACACA GTCACTATTTTCACCACGCTTCGATATTTATTGGTGCCCAAGGTTGCTGCGCATGAGAGGATTGTTGTCAACAAACTTGGCCTTGAAGGAGTTTATGGGT GCGTGATTCAATATGGCTATGCAGATTCCTTAAATCTCGAAGGAGATGACTTTTTAAGTCAAGTTACAGATAGCTTGCAGTTGTGCATACAAAACTGCTC TGGCTGCGTAACATCCGATCATGAAGAGGTTCAGGAAGAGATTTCTACATTTGAAGAAGCAAAGCTGGCTGGAGTGGTTCACATTCGAGGGAAGACAAGG TTTTATATAGGCAACAACTGTGGTTGGTTTGAAAGAAGCATGCTTGCATTTTATGAATTCTTGCACAGTAATTGTAGGTCTGCGCTGCCAGCCCTTGGGG TGCCACTACCACAGCGTATTGAGGTTGGAATGCTCTATGAAGCTTGA
AA sequence Show only first row Show all	>Potri.010G100800.1 pacid=42797490 polypeptide=Potri.010G100800.1.p locus=Potri.010G100800 ID=Potri.010G100800.1.v4.1 annot-version=v4.1 MLGGGGGGQGGSGQELRAADSAANKREFVVNVESSSSNRHSLNLRNSAFFIPPPPLTITTAHPEERGRWETVVLAYKTLGVVFGGLVTSPLYVYPSMPLK SPTEQDYLGIYSIMFWTLTLIGVVKYTSIALKADDQGEGGTFALYSLLCRNMNIGILSSKQAQTNSSLSHSVLHGSTENKSRLGIFFERSIVARRVLLFI AMLGTCMLIGDGILTPAISVLSAMDGIRAPFPSVSKSLVEALSAGVLVVLFLLQKFGTSRVSFMFSPIMGAWTLCTPLVGIYSIIQHYPSIFKALSPHYI FRFFWRNGKEGWLLLGGTVLCITGSEALFADLGHFNRSSIQIAFLLTIYPSLVLTYAGQTAYLIKNPNDHDDGFYKFIPTTIYWPIFIIATLAAVVASQS LISATFSVIKQSVVLDYFPKIKVVHTSSNKEGEVYSPEVNCILMILCVAVILIFGDGKDIGNAFGVVVSLVMLITTILLTLVMIMIWRTPPWLVAIYFFI FFTMEGVYASAVLSKIPEGGWIPFAISFILAFIMFGWFYGRQKKIEYELTHKIDLGRLGILLSEPGIQRVPGFCFFYTNIQDGLTPILGHYIKNMKSLHT VTIFTTLRYLLVPKVAAHERIVVNKLGLEGVYGCVIQYGYADSLNLEGDDFLSQVTDSLQLCIQNCSGCVTSDHEEVQEEISTFEEAKLAGVVHIRGKTR FYIGNNCGWFERSMLAFYEFLHSNCRSALPALGVPLPQRIEVGMLYEA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G30070		ATKUP1, ATKT1P,...	POTASSIUM UPTAKE TRANSPORTER 1...		Potri.010G100800 [exp]	0	1
AT1G45616		AtRLP6	receptor like protein 6 (.1)		Potri.012G009900 [exp]	2.00	0.8680
AT1G65810			P-loop containing nucleoside t...		Potri.004G077500 [exp]	22.24	0.8384
AT4G13440			Calcium-binding EF-hand family...		Potri.019G026860 [exp]	23.40	0.8612
AT1G06560			NOL1/NOP2/sun family protein (...		Potri.005G204900 [exp]	47.24	0.7372
AT3G25010		AtRLP41	receptor like protein 41 (.1)		Potri.012G007901 [exp]	68.84	0.7833
AT4G31980			unknown protein		Potri.003G208600 [exp]	102.29	0.7592
AT5G27640		ATTIF3B1, ATEIF...	EUKARYOTIC TRANSLATION INITIAT...		Potri.006G267500 [exp]	107.33	0.7633	Pt-EIF3.6
AT4G05200		CRK25	cysteine-rich RLK (RECEPTOR-li...		Potri.004G025001 [exp]	129.98	0.7706
AT5G45160			Root hair defective 3 GTP-bind...		Potri.012G116090 [exp]	145.35	0.7540
AT5G27550			P-loop containing nucleoside t...		Potri.005G030484 [exp]	152.63	0.7560

Compare expression of checked genes

Potri.010G100800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.