Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G23090 1028 / 0 SULTR3;3, AST91 sulfate transporter 91 (.1) AT3G15990 847 / 0 SULTR3;4 sulfate transporter 3;4 (.1) AT3G51895 754 / 0 AST12, ATST1, SULTR3;1 sulfate transporter 3;1 (.1) AT1G22150 663 / 0 SULTR1;3 sulfate transporter 1;3 (.1) AT4G02700 660 / 0 SULTR3;2, AST77 sulfate transporter 3;2 (.1) AT4G08620 645 / 0 SULTR1.2, SULTR1;1 sulphate transporter 1;1 (.1) AT1G78000 645 / 0 SEL1, SULTR1;2 SELENATE RESISTANT 1, sulfate transporter 1;2 (.1.2) AT5G19600 610 / 0 SULTR3;5 sulfate transporter 3;5 (.1) AT5G10180 565 / 0 SULTR2;1, AST68 sulfate transporter 2;1, ARABIDOPSIS SULFATE TRANSPORTER 68, slufate transporter 2;1 (.1) AT1G77990 553 / 0 SULTR2;2, AST56 SULPHATE TRANSPORTER 2;2, STAS domain / Sulfate transporter family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G130400 [exp] 1213 / 0 AT1G23090 998 / 0.0 sulfate transporter 91 (.1) Potri.003G056200 [exp] 869 / 0 AT3G15990 976 / 0.0 sulfate transporter 3;4 (.1) Potri.001G179400 [exp] 857 / 0 AT3G15990 990 / 0.0 sulfate transporter 3;4 (.1) Potri.005G213500 [exp] 749 / 0 AT3G51895 1040 / 0.0 sulfate transporter 3;1 (.1) Potri.010G082700 [exp] 746 / 0 AT3G51895 995 / 0.0 sulfate transporter 3;1 (.1) Potri.002G049500 [exp] 737 / 0 AT3G51895 1028 / 0.0 sulfate transporter 3;1 (.1) Potri.008G156600 [exp] 733 / 0 AT3G51895 949 / 0.0 sulfate transporter 3;1 (.1) Potri.005G167300 [exp] 696 / 0 AT1G22150 996 / 0.0 sulfate transporter 1;3 (.1) Potri.002G092500 [exp] 676 / 0 AT1G22150 973 / 0.0 sulfate transporter 1;3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034603 [exp] 1046 / 0 AT1G23090 953 / 0.0 sulfate transporter 91 (.1) Lus10035897 [exp] 866 / 0 AT3G15990 1014 / 0.0 sulfate transporter 3;4 (.1) Lus10025766 [exp] 865 / 0 AT3G15990 1012 / 0.0 sulfate transporter 3;4 (.1) Lus10025767 [exp] 830 / 0 AT3G15990 947 / 0.0 sulfate transporter 3;4 (.1) Lus10035896 [exp] 800 / 0 AT3G15990 920 / 0.0 sulfate transporter 3;4 (.1) Lus10019389 [exp] 759 / 0 AT3G15990 829 / 0.0 sulfate transporter 3;4 (.1) Lus10043247 [exp] 717 / 0 AT3G15990 789 / 0.0 sulfate transporter 3;4 (.1) Lus10006612 [exp] 706 / 0 AT3G51895 966 / 0.0 sulfate transporter 3;1 (.1) Lus10039364 [exp] 699 / 0 AT3G51895 966 / 0.0 sulfate transporter 3;1 (.1) Lus10029616 [exp] 672 / 0 AT1G22150 973 / 0.0 sulfate transporter 1;3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [poplar] [flax] APC PF00916 [poplar] [flax] Sulfate_transp Sulfate permease family CL0502 [poplar] [flax] STAS PF01740 [poplar] [flax] STAS STAS domain
Representative CDS sequence Show only first row Show all	>Potri.010G111700.3 pacid=42800221 polypeptide=Potri.010G111700.3.p locus=Potri.010G111700 ID=Potri.010G111700.3.v4.1 annot-version=v4.1 ATGGAGCCAAACGCCAGCAATAGCTTGCAACCTGATCATTGCCTAGAAATAACACCTATGGAGGTGCACAAAGTTGTCCCACCACCCCATAGGAGCACAA TACAGAAGCTCAAGAGCAGACTTAAAGAAACCTTCTTCCCTGATGACCCTCTGCGGCAATTCAAAGGACAGCCATTGGGAAAGAAATGGATACTTGCTGC TAAGTATTTCTTTCCTATTCTTCAATGGGGTCCTAATTACAGCTTCAAGCTTTTCAAATCTGATATTGTTTCTGGCCTTACCATTGCCAGCTTAGCCATT CCACAGGGCATCAGTTATGCTAAGCTAGCAAGTCTACCTCCCATAGTCGGTCTTTATTCAAGCTTTGTCCCTCCTCTTGTATACGCTGTTCTTGGAAGCT CTAGGGACCTTGCAGTAGGACCTGTTTCTATTGCTTCTCTTATACTGGGATCAATGCTTAAGCAAGAAGTATCTCCTACCAATGACCCTCTGTTGTTTCT TCAACTAGCTTTTTCCTCAACCTTCTTTGCTGGCCTCTTCCAAGCTTCATTAGGATTGCTAAGGCTTGGCTTCATTATTGATTTTCTTTCCAAGGCAACT CTAATTGGATTCATGGCTGGAGCTGCTATCATAGTCTCTCTACAACAATTAAAAAGCCTCCTTGGAATCACTCATTTCACCAAACAAATGGAACTGGTTC CTGTTTTGAGCTCCGTTTTCCACAACACCAATGAGTGGTCATGGCAAACAGTACTGATGGGATTTTGCTTCCTCGTGTTCCTTCTACTGGCAAGACACGT TAGCATGAAAAAACCAAAGCTGTTTTGGGTTTCAGCTGGAGCCCCTCTTGTGTCGGTGATACTATCTACTGTCTTGGTTTTTGCATTCAAGGCTCAACGT CATGGAATCAGTGTTATTGGAAAGTTACAAGAAGGGCTAAACCCTCCCTCATGGAACATGTTGCATTTTCATGGAAGCTACCTTGGACTAGTTGTGAAAA CTGGCCTTGTTACTGGCATTATTTCCCTCACTGAAGGCATAGCAGTTGGAAGGACTTTTGCTGCTTTGAAGAACTACCAGGTAGATGGTAACAAGGAAAT GATGGCAATTGGGTTGATGAATGTGATTGGCTCCGCCACTTCCTGTTATGTTACAACAGGTGCTTTCTCTCGTTCTGCTGTCAATCACAATGCAGGAGCC AAAACAGCAGTTTCCAACATTATAATGTCAGTGACAGTTATGGTGACCCTCCTCTTCCTAATGCCTCTATTCCAATACACCCCAAATGTTGTATTGGGTG CCATCATAGTAACAGCAGTAATTGGCCTTATAGACATCCCAGCTGCTTGCCAGATATGGAAGATCGACAAATTTGATTTTGTTGTGATGTTGTGTGCGTT CTTTGGTGTTATTCTTGTCTCTGTCCAGGACGGCCTTGCCATTGCGGTAGGGATATCAATATTCAAGATCCTTCTTCAAGTCACAAGGCCAAAGACTCTG GTTCTGGGAAACATACCTGGGACAGATATATTCCGTAATCTTCATCATTACAAGGAAGCTATGAGGATCCCTGGTTTCCTCATTTTAAGCATTGAAGCTC CAATCAACTTTGCCAATACAACCTACCTCAAAGAAAGGATTCTGAGATGGATAGATGAATATGAAACTGAAGAAGACACAAAGAGACAGTCAAGTATTCA TTTTCTGATCCTAGACCTGTCAGCTGTCAGCTCCATCGACACAAGCGGAGTCTCACTCTTGAAGGATTTAAAGAAAGCACTGGAAAATACGGGAGCTGAG CTTGTGTTGGTGAATCCTGGGGGGGAAGTGTTGGAAAAACTGCAGAGGGCCGATGATGTCCGTGATGTAATGAGCCCTGACGCCCTTTATTTGACAGTTG GAGAAGCTGTGGCTGCACTCTCATCAACAATGAAGGGCCGATCATCGAACCATGTGTAA
AA sequence Show only first row Show all	>Potri.010G111700.3 pacid=42800221 polypeptide=Potri.010G111700.3.p locus=Potri.010G111700 ID=Potri.010G111700.3.v4.1 annot-version=v4.1 MEPNASNSLQPDHCLEITPMEVHKVVPPPHRSTIQKLKSRLKETFFPDDPLRQFKGQPLGKKWILAAKYFFPILQWGPNYSFKLFKSDIVSGLTIASLAI PQGISYAKLASLPPIVGLYSSFVPPLVYAVLGSSRDLAVGPVSIASLILGSMLKQEVSPTNDPLLFLQLAFSSTFFAGLFQASLGLLRLGFIIDFLSKAT LIGFMAGAAIIVSLQQLKSLLGITHFTKQMELVPVLSSVFHNTNEWSWQTVLMGFCFLVFLLLARHVSMKKPKLFWVSAGAPLVSVILSTVLVFAFKAQR HGISVIGKLQEGLNPPSWNMLHFHGSYLGLVVKTGLVTGIISLTEGIAVGRTFAALKNYQVDGNKEMMAIGLMNVIGSATSCYVTTGAFSRSAVNHNAGA KTAVSNIIMSVTVMVTLLFLMPLFQYTPNVVLGAIIVTAVIGLIDIPAACQIWKIDKFDFVVMLCAFFGVILVSVQDGLAIAVGISIFKILLQVTRPKTL VLGNIPGTDIFRNLHHYKEAMRIPGFLILSIEAPINFANTTYLKERILRWIDEYETEEDTKRQSSIHFLILDLSAVSSIDTSGVSLLKDLKKALENTGAE LVLVNPGGEVLEKLQRADDVRDVMSPDALYLTVGEAVAALSSTMKGRSSNHV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G23090		SULTR3;3, AST91	sulfate transporter 91 (.1)		Potri.010G111700 [exp]	0	1
AT3G21670			Major facilitator superfamily ...		Potri.014G157500 [exp]	2.82	0.8843	PtrNtr1-2
AT2G27690		CYP94C1	"cytochrome P450, family 94, s...		Potri.013G075600 [exp]	12.08	0.8754
AT3G51760			Protein of unknown function (D...		Potri.016G123700 [exp]	12.96	0.8608
AT3G03790			ankyrin repeat family protein ...		Potri.013G055300 [exp]	15.39	0.7530
AT3G47570			Leucine-rich repeat protein ki...		Potri.017G151400 [exp]	22.31	0.8666
AT3G56010			unknown protein		Potri.008G070700 [exp]	30.06	0.8703
AT3G24140	bHLH	bHLH097, FMA	FAMA, basic helix-loop-helix (...		Potri.017G054500 [exp]	31.28	0.8521
AT4G12060			Double Clp-N motif protein (.1...		Potri.001G115500 [exp]	32.18	0.8438
AT3G47570			Leucine-rich repeat protein ki...		Potri.017G152500 [exp]	32.93	0.8632
AT4G17970		ATALMT12, ALMT1...	"aluminum-activated, malate tr...		Potri.001G144300 [exp]	36.19	0.8538

Compare expression of checked genes

Potri.010G111700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.