Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71040 790 / 0 LPR2 Low Phosphate Root2, Cupredoxin superfamily protein (.1) AT1G23010 784 / 0 LPR1 Low Phosphate Root1, Cupredoxin superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032443 [exp] 818 / 0 AT1G71040 809 / 0.0 Low Phosphate Root2, Cupredoxin superfamily protein (.1) Lus10027747 [exp] 46 / 9e-05 AT3G09220 707 / 0.0 laccase 7 (.1) Lus10035546 [exp] 45 / 0.0001 AT3G09220 710 / 0.0 laccase 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [poplar] [flax] CU_oxidase PF00394 [poplar] [flax] Cu-oxidase Multicopper oxidase CL0026 [poplar] [flax] CU_oxidase PF07731 [poplar] [flax] Cu-oxidase_2 Multicopper oxidase CL0026 [poplar] [flax] CU_oxidase PF07732 [poplar] [flax] Cu-oxidase_3 Multicopper oxidase
Representative CDS sequence Show only first row Show all	>Potri.010G114200.1 pacid=42798883 polypeptide=Potri.010G114200.1.p locus=Potri.010G114200 ID=Potri.010G114200.1.v4.1 annot-version=v4.1 ATGGAGAGAATTCTGGTGTTTAACATCTTCTGTTTAGCCCTGCTTATAGTGCTTCCTACAATATGGGCAGAGGACAATCTTATTAGTCCATCTAAATTGG AGAAGTTCGTCGATGAACTTCCAGACATGCCCAAGATCCAGAGTTTTGAAGTAGTGAATGGTGTTTTCAAATCCAAGCCGCTAGAGATTGGCATGTTCAA GAAGCAATGGAAATTCCACAGAGACCTCCCCCCTACACCAGTGTATGCTTATGGTACATCCAAGCGCAATGCAACTATCCCTGGTCCAACCATCGAGGCC ATTCATGGAATCGATGCCTTCGTCACGTGGCAAAATCATCTCCCTTCAAACCATATACTTCCGTGGGACCCAACTATACCAACCGCTGTACCTAGAACCA AGAAGGGCATTCCTACAGTGGTGCACCTCCACGGGAGCATTGGTGAGCCTGAGAGTGATGGACATGCGCACTCATGGTTCACCCGTAGATTTAAAGAGGT AGGACCCACTTGGACCAAGAAGGAATATCAGTACCCCAACTTGCAACATCCAGGAAACTTATGGTACCATGATCATGCCATGGGGTTAACTAGAGTAAAC TTATTAGCTGGCTTGATTGGGGCCTACATTATCCGTGATCGTGATGTTGAGACCCCACTTAGACTGCCGTGTGGTGATGAATTCGATCGGACGTTGATGG TGTTCGATCGTAGCTTTCTCACTAATGGTTCGATATACATGAGTTCCACAGGAAATAATCCCTCTATACACCCTCAGTGGCAGCCAGAGTATTTTGGTGA TGTAATTATCGTCAACGGCAAAGCATGGCCTCGTCTGACCGTACGACGTCGTAAATACAGGTTTCGTATCATCAATGCCAGCAATGCAAGATTCTTCAGG TTTTTTTTCAGCAACGGTCTGAAATTCATCCATGTGGCAGCTGATTCAGCATACCTTGAGAAGCCAGTGATAACCAATGAAACCCTCTTGGCTCCATCTG AAATCGCTGATGTGATGGTTGACTTTTCAAAGTCAAAGTCAGACAGTGCAATTCTAGGCAATGATGCAGTGTATCCCTACCCATCCGGGGACGCAGTGAA TGAAGCCAATGGCAAGGTCATGAAGTTTATCATCAAGAAGGAGCCAGAGCTTGACACTTGGAGAGTACCCAAAACCTTGGTAAAATACCCTCATGCTGAT TTATCCAGTGCATCAAAGACACGGTACATTGCCATGTACGAGTACACGAGCGACATTGATGAGCCAACCCATCTTTACATCAACGGAAAACAGTTTGATG AACCAGTTACCGAGACCCCAAGAGTGGGGACCAGTGAGATATGGAACGTGATCAATCTGACAGAGGATAATCACCCGTTGCATATTCATTTGGGATTGTT TAAGGTGATTGATCAAACCAAGTTGGTCAAGGAGGAGGAGTTTAAGGCGTGCATGTTGAAATTGAACGATGCCATCAAGTGCAAAATAGATCAGCATGCA CGTGGAGATAAGATAGAGGTGCCGGCCCATGAGAAGGGATGGAAGAATGTGTACAAGATGACACCCGGATTTGTGACAAAGATTCTTGTCAGATTTGCTT TTATACACTCAAATGAATCCTATCCGTTTGATGCAGCTGCTCAGCCTGGTTACGTCTACCATTGCCACATCTTGGATCATGAAGACAATGTGATGATGCG ACCATTGAAGCTGATAAGTTGA
AA sequence Show only first row Show all	>Potri.010G114200.1 pacid=42798883 polypeptide=Potri.010G114200.1.p locus=Potri.010G114200 ID=Potri.010G114200.1.v4.1 annot-version=v4.1 MERILVFNIFCLALLIVLPTIWAEDNLISPSKLEKFVDELPDMPKIQSFEVVNGVFKSKPLEIGMFKKQWKFHRDLPPTPVYAYGTSKRNATIPGPTIEA IHGIDAFVTWQNHLPSNHILPWDPTIPTAVPRTKKGIPTVVHLHGSIGEPESDGHAHSWFTRRFKEVGPTWTKKEYQYPNLQHPGNLWYHDHAMGLTRVN LLAGLIGAYIIRDRDVETPLRLPCGDEFDRTLMVFDRSFLTNGSIYMSSTGNNPSIHPQWQPEYFGDVIIVNGKAWPRLTVRRRKYRFRIINASNARFFR FFFSNGLKFIHVAADSAYLEKPVITNETLLAPSEIADVMVDFSKSKSDSAILGNDAVYPYPSGDAVNEANGKVMKFIIKKEPELDTWRVPKTLVKYPHAD LSSASKTRYIAMYEYTSDIDEPTHLYINGKQFDEPVTETPRVGTSEIWNVINLTEDNHPLHIHLGLFKVIDQTKLVKEEEFKACMLKLNDAIKCKIDQHA RGDKIEVPAHEKGWKNVYKMTPGFVTKILVRFAFIHSNESYPFDAAAQPGYVYHCHILDHEDNVMMRPLKLIS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G71040		LPR2	Low Phosphate Root2, Cupredoxi...		Potri.010G114200 [exp]	0	1
AT4G26850		VTC2	mannose-1-phosphate guanylyltr...		Potri.001G355600 [exp]	37.41	0.7562	VTC2.2
AT5G55960			unknown protein		Potri.001G370500 [exp]	40.00	0.7695
AT3G22530			unknown protein		Potri.002G051100 [exp]	71.76	0.7676
AT5G11720			Glycosyl hydrolases family 31 ...		Potri.011G154500 [exp]	93.38	0.7179
AT4G04830		ATMSRB5	methionine sulfoxide reductase...		Potri.008G198600 [exp]	97.46	0.7124	PtrMsrB3
AT3G51860		CAX1-LIKE, ATHC...	cation exchanger 3 (.1)		Potri.009G045800 [exp]	121.19	0.7199
AT2G28190		CZSOD2, CSD2	copper/zinc superoxide dismuta...		Potri.004G216700 [exp]	147.64	0.7422	CSD2.3
AT2G24220		ATPUP5	purine permease 5 (.1.2)		Potri.006G184900 [exp]	179.15	0.7341
AT2G47490		ATNDT1	NAD+ transporter 1, ARABIDOPSI...		Potri.014G125600 [exp]	212.41	0.7228
AT1G11910		ATAPA1, APA1	aspartic proteinase A1 (.1)		Potri.013G002200 [exp]	261.91	0.7131	SOYAP2.2

Compare expression of checked genes

Potri.010G114200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.