Plant FIBer expression Database

Potri.010G119100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G01170 754 / 0 BAT1 bidirectional amino acid transporter 1 (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G125100
[exp]
869 / 0 AT2G01170 747 / 0.0 bidirectional amino acid transporter 1 (.1.2)
Potri.007G100700
[exp]
439 / 5e-150 AT2G01170 398 / 7e-134 bidirectional amino acid transporter 1 (.1.2)
Potri.002G078100
[exp]
424 / 5e-144 AT2G01170 370 / 5e-123 bidirectional amino acid transporter 1 (.1.2)
Potri.002G078300
[exp]
318 / 2e-104 AT2G01170 268 / 2e-86 bidirectional amino acid transporter 1 (.1.2)
Potri.002G078501
[exp]
273 / 3e-86 AT2G01170 241 / 1e-74 bidirectional amino acid transporter 1 (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10034628
[exp]
821 / 0 AT2G01170 776 / 0.0 bidirectional amino acid transporter 1 (.1.2)
Lus10035260
[exp]
727 / 0 AT2G01170 667 / 0.0 bidirectional amino acid transporter 1 (.1.2)
Lus10039616
[exp]
440 / 3e-150 AT2G01170 401 / 5e-135 bidirectional amino acid transporter 1 (.1.2)
Lus10028561
[exp]
432 / 2e-146 AT2G01170 390 / 2e-130 bidirectional amino acid transporter 1 (.1.2)
Lus10029533
[exp]
119 / 3e-29 AT2G01170 133 / 2e-34 bidirectional amino acid transporter 1 (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0062 APC PF00324 AA_permease Amino acid permease
Representative CDS sequence
>Potri.010G119100.1 pacid=42798143 polypeptide=Potri.010G119100.1.p locus=Potri.010G119100 ID=Potri.010G119100.1.v4.1 annot-version=v4.1
ATGGGTCTTCCGACACATACAGCTCAAAACGGCAACGGTTCCCTTGATACAGGCAATGCCCGTCTCAAAGAGCTTGGCTACAAACAAGAGCTTAAGCGTG
ACCTCTCGGTGTTTTCGAATTTTGCGTTTTCGTTTTCGATCATATCAGTGTTGACTGGTATAACCACGCTTTACAATACTGGACTCAATTTTGGAGGGCC
AGTTTCATTGCAATATGGATGGTTCATAGCTGGTGGGTTCACCATGATTGTTGGGTTATCCATGGCTGAAATTTGCTCTTCTTATCCAACTTCTGGTGGT
CTCTACTACTGGAGTGCAAAGCTTGCTGGTCCTAATTGGGCACCCTTTGCATCTTGGATAACAGGCTGGTTCAACATTGTTGGTCAGTGGGCTGTTACAA
CCAGTGTAGATTTCTCACTTGCACAGCTGATTCAGGTTATCATTCTCCTTAGCACAGGTGGAAAAAATGGTGGTGGATATCAAGCATCAAAATATGTAGT
TATTGCTATACATGGAGGAATTTTACTCCTGCATGCTGCGCTAAATAGTCTTCCCATATCGGTCTTATCTTTCTTCGGGCAGCTGGCTGCTGCCTGGAAT
CTTGTAGGTGTTCTTGTTCTTATGATTCTCATTCCCCTTGTTGCAACGGAGAGGGCTAGTGCCAAGTTTGTGTTTACACACTTCAACACTGATAATACGG
ATGGAATCAATAGCAAAGCTTACATTTTCGTTCTGGGACTTCTGATGAGTCAGTATACCCTCACTGGGTATGATGCATCTGCTCATATGACAGAGGAAAC
TAAGAATGCTGATAAGAATGGACCAAAAGGAATAATTAGCGCCATCGGGATATCGGTTATATTTGGATGGTTTTACATAATTGGTATCACCTTTGCGGTT
ACCAACATCTCTTCTCTCTTGAGTGAAGATAATGATGCTGGTGGTTATGCCATTGCTGAAATATTTTACCAAGCTTTTAAGGGAAGATATGGCAATGGGG
TTGGGGGCATTATTTGTCTGGGAGTGGTTGCTGTTGCCATATTTTTCTGTGGCATGAGTTCAGTTACAAGCAACTCTAGGATGGTTTATGCGTTTTCTAG
AGATGGAGCCATGCCACTCTCATCACTTTGGCACAAAGTGAACAATCAGGAGGTTCCCATAAATGCCGTTTGGCTCTCTGCGGTCATATCTTTCTGCATG
GCATTGACGTATCTCGGAAGCGAGGTGGCTTTTCAGGCCATGGTATCTATAGCTACTATTGGACTGTACATTGCTTACGCCCTACCCATATTCTTCCGGG
TGACTTTGGCACGCAAGTCCTTTATTCCGGGACCATTCAATTTGGGTCGCTATGGTGTCCTGGTTGGTTGGATTGCAGTCCTTTGGGTAGCAACCATCTC
AATCCTCTTCTCATTGCCTGTAACCTACCCCATCACTAACGAGACACTCAATTACACTCCCGTCGCTGTTGGTGGTTTGTTAATCCTTACCATTTCTTCT
TGGATCTTGTGGGCTCGTCATTGGTTCAAAGGTCCTATAACCAATGTAGAAAGCTAA
AA sequence
>Potri.010G119100.1 pacid=42798143 polypeptide=Potri.010G119100.1.p locus=Potri.010G119100 ID=Potri.010G119100.1.v4.1 annot-version=v4.1
MGLPTHTAQNGNGSLDTGNARLKELGYKQELKRDLSVFSNFAFSFSIISVLTGITTLYNTGLNFGGPVSLQYGWFIAGGFTMIVGLSMAEICSSYPTSGG
LYYWSAKLAGPNWAPFASWITGWFNIVGQWAVTTSVDFSLAQLIQVIILLSTGGKNGGGYQASKYVVIAIHGGILLLHAALNSLPISVLSFFGQLAAAWN
LVGVLVLMILIPLVATERASAKFVFTHFNTDNTDGINSKAYIFVLGLLMSQYTLTGYDASAHMTEETKNADKNGPKGIISAIGISVIFGWFYIIGITFAV
TNISSLLSEDNDAGGYAIAEIFYQAFKGRYGNGVGGIICLGVVAVAIFFCGMSSVTSNSRMVYAFSRDGAMPLSSLWHKVNNQEVPINAVWLSAVISFCM
ALTYLGSEVAFQAMVSIATIGLYIAYALPIFFRVTLARKSFIPGPFNLGRYGVLVGWIAVLWVATISILFSLPVTYPITNETLNYTPVAVGGLLILTISS
WILWARHWFKGPITNVES

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G01170 BAT1 bidirectional amino acid trans... Potri.010G119100
[exp]
0 1
AT5G46050 ATPTR3, PTR3 ARABIDOPSIS THALIANA PEPTIDE T... Potri.008G170100
[exp]
1.00 0.9387
AT2G26560 PLP2, PLAIIA, P... PATATIN-LIKE PROTEIN 2, phosph... Potri.014G033500
[exp]
8.60 0.9250
AT4G35160 O-methyltransferase family pro... Potri.004G050400
[exp]
9.94 0.9122 FOMT2,Pt-OOMT2.13
AT2G26560 PLP2, PLAIIA, P... PATATIN-LIKE PROTEIN 2, phosph... Potri.014G033900
[exp]
9.94 0.9244
AT5G42830 HXXXD-type acyl-transferase fa... Potri.014G025500
[exp]
10.00 0.9218
AT1G74190 AtRLP15 receptor like protein 15 (.1) Potri.005G013100
[exp]
14.42 0.9072
AT1G14870 AtPCR2, PCR2 PLANT CADMIUM RESISTANCE 2 (.1... Potri.010G108900
[exp]
14.96 0.8959
AT1G76490 HMGR1, HMG1, At... 3-HYDROXY-3-METHYLGLUTARYL COA... Potri.009G169900
[exp]
15.00 0.9079
AT5G12340 unknown protein Potri.001G276400
[exp]
16.52 0.9124
AT3G51970 ATASAT1, ASAT1,... ARABIDOPSIS THALIANA STEROL O-... Potri.001G106800
[exp]
17.54 0.9112

Potri.010G119100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.