Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G25530 687 / 0 Transmembrane amino acid transporter family protein (.1) AT5G40780 550 / 0 LHT1, LTH1 lysine histidine transporter 1 (.1.2) AT1G24400 536 / 0 ATLHT2, AATL2, LHT2 ARABIDOPSIS LYSINE HISTIDINE TRANSPORTER 2, AMINO ACID TRANSPORTER-LIKE PROTEIN 2, lysine histidine transporter 2 (.1) AT1G67640 528 / 0 Transmembrane amino acid transporter family protein (.1) AT1G48640 518 / 0 Transmembrane amino acid transporter family protein (.1) AT1G61270 463 / 2e-161 Transmembrane amino acid transporter family protein (.1) AT1G71680 461 / 8e-161 Transmembrane amino acid transporter family protein (.1) AT3G01760 441 / 6e-153 Transmembrane amino acid transporter family protein (.1) AT1G47670 290 / 3e-93 Transmembrane amino acid transporter family protein (.1) AT4G35180 196 / 1e-57 LHT7 LYS/HIS transporter 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G118000 [exp] 823 / 0 AT1G25530 677 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.001G335300 [exp] 550 / 0 AT5G40780 752 / 0.0 lysine histidine transporter 1 (.1.2) Potri.001G335200 [exp] 538 / 0 AT5G40780 697 / 0.0 lysine histidine transporter 1 (.1.2) Potri.008G179000 [exp] 530 / 0 AT1G24400 654 / 0.0 ARABIDOPSIS LYSINE HISTIDINE TRANSPORTER 2, AMINO ACID TRANSPORTER-LIKE PROTEIN 2, lysine histidine transporter 2 (.1) Potri.010G055800 [exp] 519 / 0 AT5G40780 670 / 0.0 lysine histidine transporter 1 (.1.2) Potri.015G091600 [exp] 493 / 2e-173 AT5G40780 610 / 0.0 lysine histidine transporter 1 (.1.2) Potri.014G036500 [exp] 292 / 8e-94 AT1G47670 922 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.004G181200 [exp] 257 / 4e-80 AT1G47670 504 / 3e-175 Transmembrane amino acid transporter family protein (.1) Potri.002G012900 [exp] 256 / 5e-80 AT1G47670 577 / 0.0 Transmembrane amino acid transporter family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041482 [exp] 704 / 0 AT1G25530 666 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10034283 [exp] 578 / 0 AT1G25530 542 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10041581 [exp] 538 / 0 AT5G40780 798 / 0.0 lysine histidine transporter 1 (.1.2) Lus10022329 [exp] 538 / 0 AT5G40780 798 / 0.0 lysine histidine transporter 1 (.1.2) Lus10014606 [exp] 531 / 0 AT5G40780 746 / 0.0 lysine histidine transporter 1 (.1.2) Lus10014605 [exp] 523 / 0 AT5G40780 744 / 0.0 lysine histidine transporter 1 (.1.2) Lus10041580 [exp] 481 / 1e-168 AT5G40780 652 / 0.0 lysine histidine transporter 1 (.1.2) Lus10008263 [exp] 459 / 5e-159 AT1G71680 572 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10032074 [exp] 396 / 4e-136 AT5G40780 535 / 0.0 lysine histidine transporter 1 (.1.2) Lus10032073 [exp] 311 / 6e-103 AT5G40780 451 / 8e-158 lysine histidine transporter 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [poplar] [flax] APC PF01490 [poplar] [flax] Aa_trans Transmembrane amino acid transporter protein
Representative CDS sequence Show only first row Show all	>Potri.010G128300.1 pacid=42798647 polypeptide=Potri.010G128300.1.p locus=Potri.010G128300 ID=Potri.010G128300.1.v4.1 annot-version=v4.1 ATGGTTTCAACTTCTCCTTCCAAGGAAGATCAGTCCATGAGCAAATGGACAGAAGGCGACCCTGCTCGCCGAGCCAAATGGTGGTACTCAACTTTCCACT CTGTCACAGCCATGATCGGTGCAGGTGTTCTCAGTCTGCCCTATGCCATGGCTTACTTAGGCTGGGGTCCAGGGATAATGGTCTTAGCGTTATCCTGGTG CATGACCTTGAACACAATGTGGCAAATGATCCAACTCCATGAATGTGTTCCCGGGACTCGCTTTGATCGCTACATCGACCTAGGTCGACATGCCTTCGGG CCGAAATTGGGACCATGGATTGTCCTACCTCAGCAACTGATTGTTCAAGTTGGTTGTGATATTGTGTACATGGTCACAGGAGGAAAGTGTTTAAAGAAGT TCATGGAGATGACCTGCGCCTCTTGCACACCAATAAGGCAGTCTTACTGGATTTTGATCTTTGGTGGCATTCATTTCTTCTTGTCCCAGCTTCCTAATTT CAATTCTGTTGCTGGCGTTTCACTAGCTGCAGCAGTCATGTCACTCAGTTATTCAACCATAGCATGGGCAGGTTCTTTGGCTCATGGCCAGATTGATAAT GTGAGCTATGCTTACAAAAGCACCAGCGCAGCTGACTACATGTTTCGTGTCTTCAATGCACTGGGAGAAATTTCTTTTGCATTTGCTGGCCATGCAGTTG TTCTTGAAATCCAAGCTACAATTCCATCAACTCCTGAGAAGCCTTCCAAAATACCAATGTGGAAAGGTGCACTGGGTGCTTACTTTATCAATGCAATTTG CTATTTTCCTGTTGCCATTATAGGGTATTGGGCATTTGGACAAGATGTTGATGATAATGTGCTTACTGATCTCAAAAGACCCGCATGGCTCATCGCCTCC GCTAATTTAATGGTGGTAGTTCATGTCATTGGTAGCTACCAGGTCTATGCTATGCCTGTTTTTGACATGCTAGAGAGGATGATGATGAAAAGACTCAATT TCCCACCAGGAATTGCACTAAGACTCCTAACTCGCTCTACTTACGTTGCATTTACACTATTTGTTGGAGTAACCTTCCCATTCTTTGGAGATCTTCTTGG TTTCTTTGGTGGATTTGGTTTTGCCCCCACTTCATATTTTCTCCCTTGCGTGATGTGGCTACTAATCAAGAAACCCAAGAGATTCAGCACCAAATGGTTT ATAAATTGGGCTTGCATATTCGTCGGAGTGTTCATCATGATAGCATCCACGATTGGTGGGTTCCGGAATATTGTTACCGATTCCTCCACCTATAGGTTCT ATACATAA
AA sequence Show only first row Show all	>Potri.010G128300.1 pacid=42798647 polypeptide=Potri.010G128300.1.p locus=Potri.010G128300 ID=Potri.010G128300.1.v4.1 annot-version=v4.1 MVSTSPSKEDQSMSKWTEGDPARRAKWWYSTFHSVTAMIGAGVLSLPYAMAYLGWGPGIMVLALSWCMTLNTMWQMIQLHECVPGTRFDRYIDLGRHAFG PKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFMEMTCASCTPIRQSYWILIFGGIHFFLSQLPNFNSVAGVSLAAAVMSLSYSTIAWAGSLAHGQIDN VSYAYKSTSAADYMFRVFNALGEISFAFAGHAVVLEIQATIPSTPEKPSKIPMWKGALGAYFINAICYFPVAIIGYWAFGQDVDDNVLTDLKRPAWLIAS ANLMVVVHVIGSYQVYAMPVFDMLERMMMKRLNFPPGIALRLLTRSTYVAFTLFVGVTFPFFGDLLGFFGGFGFAPTSYFLPCVMWLLIKKPKRFSTKWF INWACIFVGVFIMIASTIGGFRNIVTDSSTYRFYT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G25530			Transmembrane amino acid trans...		Potri.010G128300 [exp]	0	1
AT5G48540			receptor-like protein kinase-r...		Potri.002G249600 [exp]	3.16	0.7825
AT2G27990	HD	PNF, BLH8	POUND-FOOLISH, BEL1-like homeo...		Potri.009G009800 [exp]	9.05	0.7621
AT1G14590			Nucleotide-diphospho-sugar tra...		Potri.015G029200 [exp]	14.79	0.7507
AT5G20260			Exostosin family protein (.1)		Potri.006G064900 [exp]	15.19	0.7375
AT4G02020		SDG10, SWINGER,...	SWINGER, SET DOMAIN-CONTAINING...		Potri.014G120100 [exp]	15.19	0.7264	SDG913,EMB173.1
AT2G38400		AGT3	alanine:glyoxylate aminotransf...		Potri.016G132200 [exp]	15.23	0.7496	AGT3.1
AT2G02820	MYB	ATMYB88	myb domain protein 88 (.1.2)		Potri.008G148400 [exp]	15.42	0.7208	MYB124.1
AT2G31800			Integrin-linked protein kinase...		Potri.017G007800 [exp]	16.70	0.7307
AT2G40200	bHLH	bHLH051	basic helix-loop-helix (bHLH) ...		Potri.010G186700 [exp]	19.36	0.7427
AT4G19670			RING/U-box superfamily protein...		Potri.012G119000 [exp]	20.49	0.7279

Compare expression of checked genes

Potri.010G128300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.