Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	RAV2.2,RAV1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G25560 441 / 1e-154 AP2_ERF EDF1, TEM1 TEMPRANILLO 1, ETHYLENE RESPONSE DNA BINDING FACTOR 1, AP2/B3 transcription factor family protein (.1) AT1G68840 432 / 1e-151 AP2_ERF EDF2, RAV2, RAP2.8, TEM2, AtRAV2 TEMPRANILLO 2, RELATED TO AP2 8, ETHYLENE RESPONSE DNA BINDING FACTOR 2, related to ABI3/VP1 2 (.1.2) AT1G13260 425 / 1e-148 AP2_ERF EDF4, RAV1 ETHYLENE RESPONSE DNA BINDING FACTOR 4, related to ABI3/VP1 1 (.1) AT3G25730 376 / 1e-129 AP2_ERF EDF3 ethylene response DNA binding factor 3 (.1) AT1G50680 175 / 2e-51 AP2_ERF AP2/B3 transcription factor family protein (.1) AT3G61970 171 / 3e-50 B3 NGA2 NGATHA2, AP2/B3-like transcriptional factor family protein (.1) AT2G46870 169 / 3e-49 B3 NGA1 NGATHA1, AP2/B3-like transcriptional factor family protein (.1) AT1G01030 167 / 6e-48 B3 NGA3 NGATHA3, AP2/B3-like transcriptional factor family protein (.1) AT1G51120 165 / 3e-47 AP2_ERF AP2/B3 transcription factor family protein (.1) AT3G11580 157 / 1e-45 B3 AP2/B3-like transcriptional factor family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G117100 [exp] 670 / 0 AT1G25560 422 / 6e-148 TEMPRANILLO 1, ETHYLENE RESPONSE DNA BINDING FACTOR 1, AP2/B3 transcription factor family protein (.1) Potri.018G109201 [exp] 193 / 5e-58 AT1G51120 286 / 8e-95 AP2/B3 transcription factor family protein (.1) Potri.006G186301 [exp] 184 / 2e-54 AT1G51120 287 / 3e-95 AP2/B3 transcription factor family protein (.1) Potri.003G212800 [exp] 179 / 2e-52 AT1G51120 312 / 7e-105 AP2/B3 transcription factor family protein (.1) Potri.014G107200 [exp] 166 / 3e-47 AT2G46870 241 / 6e-77 NGATHA1, AP2/B3-like transcriptional factor family protein (.1) Potri.011G149700 [exp] 166 / 6e-47 AT2G46870 218 / 2e-67 NGATHA1, AP2/B3-like transcriptional factor family protein (.1) Potri.002G181600 [exp] 166 / 7e-47 AT2G46870 264 / 6e-86 NGATHA1, AP2/B3-like transcriptional factor family protein (.1) Potri.001G452200 [exp] 163 / 9e-46 AT2G46870 198 / 4e-60 NGATHA1, AP2/B3-like transcriptional factor family protein (.1) Potri.016G074500 [exp] 157 / 3e-44 AT2G36080 219 / 9e-70 AP2/B3-like transcriptional factor family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041487 [exp] 439 / 5e-154 AT1G13260 416 / 8e-146 ETHYLENE RESPONSE DNA BINDING FACTOR 4, related to ABI3/VP1 1 (.1) Lus10021707 [exp] 387 / 1e-133 AT1G13260 369 / 1e-127 ETHYLENE RESPONSE DNA BINDING FACTOR 4, related to ABI3/VP1 1 (.1) Lus10034276 [exp] 244 / 2e-79 AT1G68840 233 / 4e-76 TEMPRANILLO 2, RELATED TO AP2 8, ETHYLENE RESPONSE DNA BINDING FACTOR 2, related to ABI3/VP1 2 (.1.2) Lus10036282 [exp] 164 / 2e-47 AT1G50680 268 / 2e-88 AP2/B3 transcription factor family protein (.1) Lus10021326 [exp] 157 / 7e-45 AT5G06250 202 / 2e-63 AP2/B3-like transcriptional factor family protein (.1.2) Lus10004226 [exp] 133 / 5e-35 AT5G06250 183 / 4e-55 AP2/B3-like transcriptional factor family protein (.1.2) Lus10026212 [exp] 107 / 4e-27 AT1G51120 150 / 4e-44 AP2/B3 transcription factor family protein (.1) Lus10025226 [exp] 79 / 3e-15 AT4G32010 808 / 0.0 VP1/ABI3-LIKE 2, HSI2-like 1 (.1) Lus10022741 [exp] 75 / 4e-14 AT4G32010 748 / 0.0 VP1/ABI3-LIKE 2, HSI2-like 1 (.1) Lus10025142 [exp] 72 / 3e-13 AT4G32010 794 / 0.0 VP1/ABI3-LIKE 2, HSI2-like 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [poplar] [flax] MBD-like PF00847 [poplar] [flax] AP2 AP2 domain CL0405 [poplar] [flax] DNA_b-psBarrel PF02362 [poplar] [flax] B3 B3 DNA binding domain
Representative CDS sequence Show only first row Show all	>Potri.010G129200.1 pacid=42796819 polypeptide=Potri.010G129200.1.p locus=Potri.010G129200 ID=Potri.010G129200.1.v4.1 annot-version=v4.1 ATGCCTCTCTCTTTAGTCAACAAAAACACCTCGTCTATCTCTCTCTCCTTTTCCTTCTCTCTTGCTCCTCCCTCTTTTACAACAACAACAAGGAAAAAAA ATATGGATGGAAGCTGCATAGATGAAAGCACAACTAGTAGTGCTGATAACTCCATATCCATTACACCAACCTCCCTCCCTCCCTTCCCACCAACTGCTAC CACTACAAAATCACCACCTGAGTCACTTTGCCGTGTTAGGAGCGGCAATAGTAGTGTTATTCTTGATTCGGAATCAGGTGTCGAAGCTGAATCGAGAAAA CTCCCTTCTTCTAAATACAAAGGTGTTGTCCCCCAACCAAATGGTCGCTGGGGTGCACAGATTTACGAGAAGCACCAGCGTGTGTGGCTCGGGACGTTCA ATGAAGAAAATGAAGCAGCAAGAGCCTATGATATTGCTGCTCAGAGATTCCGTGGAAGGGATGCCGTGACTAACTTCAAGCAAGTTAATGAGACCGAAGA TGATGAAATAGAGGCTGCTTTCCTGAACGCTCATTCGAAAGCTGAAATCGTTGACATGTTGAGGAAACACACGTACAGCGATGAGCTAGAGCAAAGCAAA AGGAACCACAGGAGTAACAATGGGGGAAATGGGAAGCAATACAAGAATACAGCAAACTACGAGAATAATAGTTATGATCATGGTTGTGGTCGGGTGTTGA AAGCGCGTGAACAGCTTTTTGAGAAAGCTGTGACTCCGAGTGATGTTGGGAAATTGAATCGGCTTGTGATACCAAAACAACATGCGGAAAAGCATTTTCC TTTGCAAAGTACATCAAGCAATAGTACTAAAGGTGTATTGCTTAACTTGGAAGATGTGAGCGGCAAAGTGTGGAGGTTTCGTTATTCTTATTGGAATAGT AGCCAAAGTTATGTTTTGACAAAAGGGTGGAGCCGATTTGTTAAAGAAAAGAACTTGAAAGCTGGTGACATTGTTTGCTTTCAAAGATCAACTGGACCTG ATAACCAGCTTTACATTGATTGGAAAGCAAGATGCGGGTCCAACCAGGTCCAACCGGTTCAGATGGTGAGGTTGTTTGGGGTTAATATTTTTAATGTACC TGGGATGGAAAATGGGTGTGATGGGAAGAGATCAATAAGGGATATGGAGCTTTTGTCAATAGATCGTCAGTATAGTAAGAAACAAAGGATCGTTGGAGCC TTGTAA
AA sequence Show only first row Show all	>Potri.010G129200.1 pacid=42796819 polypeptide=Potri.010G129200.1.p locus=Potri.010G129200 ID=Potri.010G129200.1.v4.1 annot-version=v4.1 MPLSLVNKNTSSISLSFSFSLAPPSFTTTTRKKNMDGSCIDESTTSSADNSISITPTSLPPFPPTATTTKSPPESLCRVRSGNSSVILDSESGVEAESRK LPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEENEAARAYDIAAQRFRGRDAVTNFKQVNETEDDEIEAAFLNAHSKAEIVDMLRKHTYSDELEQSK RNHRSNNGGNGKQYKNTANYENNSYDHGCGRVLKAREQLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQSTSSNSTKGVLLNLEDVSGKVWRFRYSYWNS SQSYVLTKGWSRFVKEKNLKAGDIVCFQRSTGPDNQLYIDWKARCGSNQVQPVQMVRLFGVNIFNVPGMENGCDGKRSIRDMELLSIDRQYSKKQRIVGA L

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G25560	AP2_ERF	EDF1, TEM1	TEMPRANILLO 1, ETHYLENE RESPON...		Potri.010G129200 [exp]	0	1	RAV2.2,RAV1
AT4G24570		DIC2	dicarboxylate carrier 2 (.1)		Potri.007G113000 [exp]	2.44	0.9395
AT1G23710			Protein of unknown function (D...		Potri.010G041300 [exp]	2.82	0.9331
AT5G57123			unknown protein		Potri.006G073400 [exp]	5.65	0.8990
					Potri.017G045000 [exp]	7.34	0.8986
AT3G57450			unknown protein		Potri.006G050800 [exp]	8.48	0.9090
					Potri.005G087400 [exp]	8.66	0.9105
AT1G21010			unknown protein		Potri.005G259100 [exp]	10.19	0.9130
AT3G14470			NB-ARC domain-containing disea...		Potri.017G133600 [exp]	10.48	0.8977
AT1G76650		CML38	calmodulin-like 38 (.1.2.3)		Potri.015G093800 [exp]	10.58	0.8879
AT5G67080		MAPKKK19	mitogen-activated protein kina...		Potri.005G139300 [exp]	12.96	0.9026

Compare expression of checked genes

Potri.010G129200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.