Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49330 246 / 4e-79 MYB PFG3, ATMYB111 PRODUCTION OF FLAVONOL GLYCOSIDES 3, ARABIDOPSIS MYB DOMAIN PROTEIN 111, myb domain protein 111 (.1) AT2G47460 232 / 3e-73 MYB PFG1, ATMYB12 PRODUCTION OF FLAVONOL GLYCOSIDES 1, myb domain protein 12 (.1) AT3G62610 218 / 4e-68 MYB PFG2, ATMYB11 PRODUCTION OF FLAVONOL GLYCOSIDES 2, myb domain protein 11 (.1) AT4G38620 190 / 3e-58 MYB AtMYB4 myb domain protein 4 (.1) AT2G16720 189 / 4e-58 MYB AtY49, AtMYB7 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 7, myb domain protein 7 (.1) AT3G23250 189 / 1e-57 MYB ATMYB15, ATY19 myb domain protein 15 (.1.2) AT4G09460 186 / 2e-57 MYB ATMYB6, ATMYB8 myb domain protein 6 (.1) AT1G35515 184 / 6e-57 MYB MYB8, HOS10 high response to osmotic stress 10 (.1) AT1G22640 186 / 8e-57 MYB AtMYB3 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 3 (.1) AT3G61250 186 / 1e-56 MYB LMI2, ATMYB17 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G198100 [exp] 249 / 2e-79 AT5G49330 225 / 2e-70 PRODUCTION OF FLAVONOL GLYCOSIDES 3, ARABIDOPSIS MYB DOMAIN PROTEIN 111, myb domain protein 111 (.1) Potri.014G122700 [exp] 225 / 3e-70 AT5G49330 214 / 4e-66 PRODUCTION OF FLAVONOL GLYCOSIDES 3, ARABIDOPSIS MYB DOMAIN PROTEIN 111, myb domain protein 111 (.1) Potri.014G100800 [exp] 192 / 3e-59 AT2G16720 207 / 3e-66 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 7, myb domain protein 7 (.1) Potri.005G224100 [exp] 192 / 4e-59 AT3G23250 255 / 1e-84 myb domain protein 15 (.1.2) Potri.003G144200 [exp] 192 / 4e-59 AT5G49330 205 / 2e-64 PRODUCTION OF FLAVONOL GLYCOSIDES 3, ARABIDOPSIS MYB DOMAIN PROTEIN 111, myb domain protein 111 (.1) Potri.001G086700 [exp] 191 / 1e-58 AT5G49330 203 / 6e-64 PRODUCTION OF FLAVONOL GLYCOSIDES 3, ARABIDOPSIS MYB DOMAIN PROTEIN 111, myb domain protein 111 (.1) Potri.019G018200 [exp] 189 / 1e-58 AT2G31180 223 / 1e-73 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 14, myb domain protein 14 (.1) Potri.004G138000 [exp] 192 / 2e-58 AT4G38620 257 / 8e-85 myb domain protein 4 (.1) Potri.002G173900 [exp] 190 / 3e-58 AT3G13540 207 / 4e-66 myb domain protein 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016855 [exp] 241 / 2e-77 AT5G49330 242 / 3e-78 PRODUCTION OF FLAVONOL GLYCOSIDES 3, ARABIDOPSIS MYB DOMAIN PROTEIN 111, myb domain protein 111 (.1) Lus10036336 [exp] 220 / 8e-69 AT2G47460 225 / 9e-71 PRODUCTION OF FLAVONOL GLYCOSIDES 1, myb domain protein 12 (.1) Lus10036453 [exp] 218 / 1e-68 AT5G49330 237 / 1e-76 PRODUCTION OF FLAVONOL GLYCOSIDES 3, ARABIDOPSIS MYB DOMAIN PROTEIN 111, myb domain protein 111 (.1) Lus10010273 [exp] 219 / 2e-68 AT2G47460 221 / 3e-69 PRODUCTION OF FLAVONOL GLYCOSIDES 1, myb domain protein 12 (.1) Lus10001458 [exp] 214 / 6e-67 AT2G47460 212 / 5e-66 PRODUCTION OF FLAVONOL GLYCOSIDES 1, myb domain protein 12 (.1) Lus10002435 [exp] 213 / 3e-66 AT2G47460 206 / 9e-64 PRODUCTION OF FLAVONOL GLYCOSIDES 1, myb domain protein 12 (.1) Lus10003557 [exp] 191 / 3e-58 AT3G23250 239 / 4e-78 myb domain protein 15 (.1.2) Lus10033889 [exp] 191 / 4e-58 AT3G23250 239 / 1e-78 myb domain protein 15 (.1.2) Lus10000411 [exp] 190 / 5e-58 AT4G09460 300 / 5e-103 myb domain protein 6 (.1) Lus10001548 [exp] 189 / 1e-57 AT4G09460 291 / 2e-99 myb domain protein 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00249 [poplar] [flax] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.010G141000.1 pacid=42800074 polypeptide=Potri.010G141000.1.p locus=Potri.010G141000 ID=Potri.010G141000.1.v4.1 annot-version=v4.1 ATGGGAAGAGCACCATGCTGTGAGAAAGTAGGGCTAAAGAAAGGGAGATGGACAGCTGAAGAGGATGAAGTCTTAACCAAATACATTCTAGCCAACGGTG AAGGCTCGTGGAAATCACTACCTAAAAATGCAGGGTTATTAAGGTGTGGTAAGAGCTGTAGACTAAGATGGATTAACTACTTAAGAGCTGACTTGAAGAG AGGGAACATAACCAAAGAAGAGGAAGAGACCATTGTTAAGTTGCATACTGCTTTGGGTAATAGATGGTCTTTCATTGCTGCTCAATTACCAGGACGAACA GACAATGAGATAAAGAACTACTGGAATTCTCATTTAAGCAGAAAAATTTACAGCTTCAATCGGTATAAAAATGATGATTCTCTACCAAGCATCATGGATA TCACCGATGTAGCAGCTGGGCCATACAAGGGTAGAGGTGGTAGAACAAGCCGGTCATCCATGAAAAAGCACAAGGCCACATTAATATCATTAGGTAAGCC TAAGAGTCCTAAAGCCATAGCTCATGAGGTAACTGAACCAGCGAGCAAAGAAACAGCAGCGATCTCACCCAAAGGTACAAACAGCTCATTAAAGAGTTCG GCCACTGAAGGTCCACAGAAGGAACCAGAAAATAGAAAGAATCTTGGTGTGCAAGTCCAAGAATCTTGCATAGACATTGCTAAAAGAATTAATGCAGCTG GAATATCTCATTGCCCTATTAATGACGAGAAAGAGACTGAAACTTTAGGACCATATGAATGGCTAGACAGTGAAATAAAGCGCCTTGAATATGCACTGCA ACGTCAAGTTGCAGATCCTTTTGGAAATAATACAGTTGTGACATTAGAGACAGACAATGAGGCACCGAGTATGAGCAAGGAGAGCGAAAATTATAATGGG GTAATGGGACCAAAAAGGGTGGCCGTCCATTACCTGAAAAAACAAAGCAACAGCAGCAATGGTTGTAGCTCAAATGAAGAGAGTAACGGGGAATGGTACA ATAGCTTTTCACCTATGAATCCAAGGTTTGATGAGGAATGGCTTGATTGGGACTGGACAATAGCTGGGGATCTTGGTGGGTGGGGATTGTTATAA
AA sequence Show only first row Show all	>Potri.010G141000.1 pacid=42800074 polypeptide=Potri.010G141000.1.p locus=Potri.010G141000 ID=Potri.010G141000.1.v4.1 annot-version=v4.1 MGRAPCCEKVGLKKGRWTAEEDEVLTKYILANGEGSWKSLPKNAGLLRCGKSCRLRWINYLRADLKRGNITKEEEETIVKLHTALGNRWSFIAAQLPGRT DNEIKNYWNSHLSRKIYSFNRYKNDDSLPSIMDITDVAAGPYKGRGGRTSRSSMKKHKATLISLGKPKSPKAIAHEVTEPASKETAAISPKGTNSSLKSS ATEGPQKEPENRKNLGVQVQESCIDIAKRINAAGISHCPINDEKETETLGPYEWLDSEIKRLEYALQRQVADPFGNNTVVTLETDNEAPSMSKESENYNG VMGPKRVAVHYLKKQSNSSNGCSSNEESNGEWYNSFSPMNPRFDEEWLDWDWTIAGDLGGWGLL

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G49330	MYB	PFG3, ATMYB111	PRODUCTION OF FLAVONOL GLYCOSI...		Potri.010G141000 [exp]	0	1
AT3G52360			unknown protein		Potri.006G200000 [exp]	4.47	0.7178
AT3G12800		SDRB, DECR	short-chain dehydrogenase-redu...		Potri.006G025400 [exp]	15.87	0.6766
AT1G52855			unknown protein		Potri.019G104100 [exp]	16.30	0.6691
AT3G49190			O-acyltransferase (WSD1-like) ...		Potri.013G085101 [exp]	29.32	0.7050
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Potri.005G073766 [exp]	29.39	0.6444
AT5G15650		REVERSIBLYGLYCO...	reversibly glycosylated polype...		Potri.017G099100 [exp]	43.79	0.6948
AT4G22010		SKS4	SKU5 similar 4 (.1)		Potri.004G010100 [exp]	63.87	0.6672
AT4G38190		ATCSLD4	ARABIDOPSIS THALIANA CELLULOSE...		Potri.009G170000 [exp]	66.48	0.6669	ATCSLD4.1
AT5G06720		ATPA2	peroxidase 2 (.1)		Potri.003G214700 [exp]	77.20	0.6635
AT3G26380			Melibiase family protein (.1)		Potri.010G048400 [exp]	120.81	0.6372

Compare expression of checked genes

Potri.010G141000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.