Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	GRAS79
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G66350 198 / 6e-58 GRAS RGL1 RGA-like 1 (.1) AT3G03450 191 / 1e-54 GRAS RGL2 RGA-like 2 (.1) AT2G01570 182 / 2e-51 GRAS RGA1 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) AT1G14920 181 / 2e-51 GRAS RGA2, GAI RESTORATION ON GROWTH ON AMMONIA 2, GIBBERELLIC ACID INSENSITIVE, GRAS family transcription factor family protein (.1) AT5G17490 181 / 2e-51 GRAS AtRGL3, RGL3 RGA-like protein 3 (.1) AT1G55580 126 / 9e-32 GRAS SCL18, LAS SCARECROW-LIKE 18, Lateral Suppressor, GRAS family transcription factor (.1) AT2G29065 123 / 4e-30 GRAS family transcription factor (.1) AT5G41920 120 / 8e-30 GRAS GRAS family transcription factor (.1) AT1G63100 122 / 1e-29 GRAS GRAS family transcription factor (.1) AT3G54220 121 / 2e-29 GRAS SGR1, SCR SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G143700 [exp] 416 / 6e-141 AT1G66350 182 / 2e-50 RGA-like 1 (.1) Potri.010G143400 [exp] 388 / 2e-131 AT1G66350 207 / 1e-60 RGA-like 1 (.1) Potri.010G143500 [exp] 389 / 4e-131 AT3G03450 182 / 8e-51 RGA-like 2 (.1) Potri.010G143600 [exp] 385 / 2e-129 AT3G03450 205 / 7e-59 RGA-like 2 (.1) Potri.002G195600 [exp] 370 / 2e-123 AT3G03450 209 / 2e-60 RGA-like 2 (.1) Potri.014G120000 [exp] 303 / 1e-97 AT3G03450 174 / 1e-47 RGA-like 2 (.1) Potri.008G131700 [exp] 201 / 4e-58 AT2G01570 781 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.010G110700 [exp] 192 / 5e-55 AT2G01570 764 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.017G125200 [exp] 188 / 3e-53 AT2G01570 701 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016886 [exp] 439 / 7e-152 AT3G03450 165 / 3e-45 RGA-like 2 (.1) Lus10016893 [exp] 331 / 1e-107 AT3G03450 175 / 1e-47 RGA-like 2 (.1) Lus10037758 [exp] 325 / 8e-106 AT3G03450 186 / 6e-52 RGA-like 2 (.1) Lus10016897 [exp] 322 / 2e-104 AT3G03450 189 / 5e-53 RGA-like 2 (.1) Lus10001451 [exp] 301 / 4e-98 AT5G17490 179 / 7e-51 RGA-like protein 3 (.1) Lus10037753 [exp] 295 / 5e-95 AT1G66350 156 / 8e-42 RGA-like 1 (.1) Lus10002424 [exp] 293 / 7e-93 AT5G17490 161 / 8e-43 RGA-like protein 3 (.1) Lus10037756 [exp] 288 / 1e-92 AT1G50420 156 / 5e-42 scarecrow-like 3 (.1) Lus10036459 [exp] 284 / 3e-90 AT3G03450 171 / 1e-46 RGA-like 2 (.1) Lus10016891 [exp] 281 / 5e-90 AT3G03450 152 / 2e-40 RGA-like 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF03514 [poplar] [flax] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Potri.010G143200.1 pacid=42797234 polypeptide=Potri.010G143200.1.p locus=Potri.010G143200 ID=Potri.010G143200.1.v4.1 annot-version=v4.1 ATGGTTCCTGACAGTAGATTATCAACTGAAGAAGTCATGAGGGTAGCAAGAGCAAGGTTCATCCAAATTTCTTGCCAGCAGCACATTGATCTCTCCTTGC TTAACCATTTCTTTGATGGCCATGTTGCTCAGTTTGGCTCCTCTGGCATGGAGATCAAAGACATGGAACTTGCACTACTTCTTCTAGCTTCTGCTGACAA GATTGAAAATCAGCAATTTGATAATGCGAGCAAATCCCTTAACTTGTGTGGTTTCTTGTCTTCCAAGAGAGGAAATTCAGTTCAACGAGTTGTTCATTAT TTTGCAAAAGCTCTTGGTGAGAGGATTGAACGAAAAATTGGGGTTGTCACATTAACGGGAATGGAAAGCAAAGGTCAGCTATTGCATCTCGAAGAGACAG CAGTCACTCTGAATCCTGCTCTTATTGCATGTTCCTTACGACAACCCTACAGTCAAGTTAGTCAATTCGCTGGAATCCAGGCAGTTGTAGAGCGTTTGAC CTCTGCAAAGAAAGTTCATTTTATAGACCTTGCCATTAGAAGTGGAGGGCACTGCATAGTTTTGATGCAAGCTCTTGCCAATCGACATGAAAGACCAGTG GAGCTTCTAAAAATAACTGCTGTTGGAACAACGTCAGAGCAGAAAATGGAAGAGGCAGGTGTAAAGTTGTCCTGTTTTGCTGAGACCTTGAGCTTACCAT TTTCATTCAAAGCTATTACAATTGAAAACATCAAAGATTTAAAAGAAGATATGTTCGAGTTAAGTGATGGAGAAGTCGTAGCTATCTTCTCCAGGATTAT GCTGAGAACCATAAAACCACACCCTGGTTGCATGGAATCTCTTCTAGGAGTGCTAAGGAACCTAAATCCGCGTGTGATGGTGATCACCGAGTTCGAGGCA AATCACTGCTTACCAATATTCATAGATCGGTTTCTCGAAGCACTATTTTTCTACAGTGCTTTTTATGATTGTCTTGAATTTAACATGGATCCGTGTGATC CATATAGAATGACACTGGAAGCATGTCTGGGACAGGAAATCCGAGATATTGTTGCTGCTGAGGATGATAAAAGAATGTTCCAGCACTTGAAGATCGATGG CTGGAGGGCTAATTTCGCAAAGCTTGGAATGGTGGAAGAAGAACTTAGCACGTCATCTTTTTATCAAGCAGAGCTGGTGCTTCAGAATTTTGCTTCTGGA AATTTATGCACACTTGACAGGAATGGAAAATGCCTTATTACTGGATGGAGGGGAACTCCAATTCTTTCAGTTTCTGCTTGGAGGTTCCATCAACAGGAAC AGAAAAGGAAGGGTTGTACCAAGAAATATAAATCATGTTAA
AA sequence Show only first row Show all	>Potri.010G143200.1 pacid=42797234 polypeptide=Potri.010G143200.1.p locus=Potri.010G143200 ID=Potri.010G143200.1.v4.1 annot-version=v4.1 MVPDSRLSTEEVMRVARARFIQISCQQHIDLSLLNHFFDGHVAQFGSSGMEIKDMELALLLLASADKIENQQFDNASKSLNLCGFLSSKRGNSVQRVVHY FAKALGERIERKIGVVTLTGMESKGQLLHLEETAVTLNPALIACSLRQPYSQVSQFAGIQAVVERLTSAKKVHFIDLAIRSGGHCIVLMQALANRHERPV ELLKITAVGTTSEQKMEEAGVKLSCFAETLSLPFSFKAITIENIKDLKEDMFELSDGEVVAIFSRIMLRTIKPHPGCMESLLGVLRNLNPRVMVITEFEA NHCLPIFIDRFLEALFFYSAFYDCLEFNMDPCDPYRMTLEACLGQEIRDIVAAEDDKRMFQHLKIDGWRANFAKLGMVEEELSTSSFYQAELVLQNFASG NLCTLDRNGKCLITGWRGTPILSVSAWRFHQQEQKRKGCTKKYKSC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G66350	GRAS	RGL1	RGA-like 1 (.1)		Potri.010G143200 [exp]	0	1	GRAS79
AT3G63520		ATNCED1, ATCCD1...	carotenoid cleavage dioxygenas...		Potri.006G239300 [exp]	4.47	0.8615
AT1G66350	GRAS	RGL1	RGA-like 1 (.1)		Potri.010G143700 [exp]	12.76	0.8767	GRAS75
AT3G28345		MDR13, ABCB15	multi-drug resistance 13, ATP-...		Potri.011G133800 [exp]	15.96	0.8395
AT1G77640	AP2_ERF		Integrase-type DNA-binding sup...		Potri.002G085600 [exp]	22.49	0.8309	DREB41
AT5G55050			GDSL-like Lipase/Acylhydrolase...		Potri.005G104900 [exp]	30.78	0.8428
					Potri.017G045000 [exp]	32.72	0.8221
					Potri.005G204000 [exp]	35.39	0.8378
AT1G06330			Heavy metal transport/detoxifi...		Potri.011G065600 [exp]	50.79	0.7851
AT1G79620			Leucine-rich repeat protein ki...		Potri.013G053001 [exp]	68.41	0.8220
AT1G66350	GRAS	RGL1	RGA-like 1 (.1)		Potri.012G093900 [exp]	70.32	0.7996

Compare expression of checked genes

Potri.010G143200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.