Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G66350 207 / 1e-60 GRAS RGL1 RGA-like 1 (.1) AT3G03450 201 / 5e-58 GRAS RGL2 RGA-like 2 (.1) AT5G17490 178 / 7e-50 GRAS AtRGL3, RGL3 RGA-like protein 3 (.1) AT1G14920 171 / 6e-47 GRAS RGA2, GAI RESTORATION ON GROWTH ON AMMONIA 2, GIBBERELLIC ACID INSENSITIVE, GRAS family transcription factor family protein (.1) AT2G01570 171 / 1e-46 GRAS RGA1 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) AT5G41920 147 / 2e-39 GRAS GRAS family transcription factor (.1) AT4G08250 148 / 3e-39 GRAS GRAS family transcription factor (.1) AT1G07520 149 / 1e-38 GRAS GRAS family transcription factor (.1) AT4G17230 146 / 4e-38 GRAS SCL13 SCARECROW-like 13 (.1) AT2G29065 145 / 1e-37 GRAS family transcription factor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G143600 [exp] 451 / 2e-154 AT3G03450 205 / 7e-59 RGA-like 2 (.1) Potri.010G143700 [exp] 441 / 5e-150 AT1G66350 182 / 2e-50 RGA-like 1 (.1) Potri.010G143500 [exp] 431 / 7e-147 AT3G03450 182 / 8e-51 RGA-like 2 (.1) Potri.002G195600 [exp] 385 / 1e-128 AT3G03450 209 / 2e-60 RGA-like 2 (.1) Potri.010G143200 [exp] 380 / 3e-128 AT1G66350 198 / 8e-58 RGA-like 1 (.1) Potri.014G120000 [exp] 325 / 1e-105 AT3G03450 174 / 1e-47 RGA-like 2 (.1) Potri.008G131700 [exp] 199 / 8e-57 AT2G01570 781 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.010G110700 [exp] 194 / 3e-55 AT2G01570 764 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.017G125200 [exp] 192 / 2e-54 AT2G01570 701 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016897 [exp] 386 / 9e-129 AT3G03450 189 / 5e-53 RGA-like 2 (.1) Lus10037758 [exp] 383 / 1e-127 AT3G03450 186 / 6e-52 RGA-like 2 (.1) Lus10016893 [exp] 359 / 5e-118 AT3G03450 175 / 1e-47 RGA-like 2 (.1) Lus10036459 [exp] 357 / 5e-118 AT3G03450 171 / 1e-46 RGA-like 2 (.1) Lus10022414 [exp] 348 / 4e-115 AT2G01570 169 / 5e-46 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Lus10018098 [exp] 338 / 1e-111 AT2G01570 165 / 9e-45 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Lus10018099 [exp] 329 / 2e-107 AT2G01570 171 / 1e-46 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Lus10037753 [exp] 326 / 3e-106 AT1G66350 156 / 8e-42 RGA-like 1 (.1) Lus10016886 [exp] 317 / 1e-103 AT3G03450 165 / 3e-45 RGA-like 2 (.1) Lus10037756 [exp] 317 / 2e-103 AT1G50420 156 / 5e-42 scarecrow-like 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF03514 [poplar] [flax] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Potri.010G143400.1 pacid=42799813 polypeptide=Potri.010G143400.1.p locus=Potri.010G143400 ID=Potri.010G143400.1.v4.1 annot-version=v4.1 ATGGGTTTTCATTGTCCAGGACTTGAAACCAAGGGAAAATCCTATCTGAAACCTCAAAGCCTAGGGGAAGGGAAGGACAATCAAGCTTCATTCTCTTTAG AAGCATTTCAAGTCCTGAAACAGTATGAAAAACGAGTGAAGCATCTAAACAAGGAAAAATTGGAAGAACCAAGCAATATCATAGAACGCAACAGCGCTGA TGTCCTGGCATTATCAACAGAAGAAATCATAAAGGTCGCAACAGAAACTTCTCTCGAATACCATCTCCAAAGATCTGACAATCTCTCCAGCTTGTCTTTT GGTTGTGCACCTTTTGTTCTCACCAGTGACGGTGTGAAATACGTGGAACTCATTCAATTTCTTATAGCCGCAGCCGAGAAGGTTGGCCAACAGCAATTTG ATCACGTGAGTGAAATGCTCAGTATGTGTGATCAAATGTCTTCTGCTACAGGGAATCCAGTTCAAAGGATCGTTTACTATTTCACTGGAGCACTTCGAGA GAGAATAGATCGAGAAACTGGAAAAATAACACCCAGAGGATTGTTTACTATTTCATCAAATGTGGAAGAGGCAATGGTGAGCTTGAGCCCTGCCATTCTT GAATGTCACCAAAGAATGCCCTTTTGTCAGATTGCACAATTAACCGGAATCCAAGCTATTGTGGAAAGCGCAGCCGATGCAAAAAGGCTTCATGTCATTG ATCTGAAGATTGATTCTGGGGTGCAATGGATAGCATTGATGCAGGCTCTTGCGGCTCGGAATGATTGTCCCACTGAACTACTTAAGATAACTGCTTTTGG GACAACATCAATGAGTAAAATTCAGGAGACTGGTAAGAGGCTGGCACAGTTTGCCGAAACTGTGAACTTACCCTTTTCATTCAACCTAGTTATGGTTCTC AACATAAATGATCTGAAGAAAGAGTCCTTCGACATAGAAGCTGGAGAATTCATTGCCGTCTACTCCTCACTCTTTCTTAAGAACTTGTTAGCACAGCCTA AATGCTTGGAATCCTTAATGAGGGTAATAAGAGATCTTCGACCAGAAATAATGGTGATCACAGAACCGGAGGCAAACCACAATTCACAAGCTTTTAAAGA TCGTTTTGTTGAAACTCTCCTTTATTTTAGTGCAATTTTTGATTGCCTGGAAGCATGCATGGACCGGTCTGATCCAAGTAGAATGGGAGCAGAAGGTCTT TACTTAAGTTATGCGATAAAAAATAGTATTGCAAAGGAAGGGAAGGAGAGGACATTTGAATGTGTAAAGATTGATTACTGGAGGGCTTATTTAGCAGAAT TTGGAATGGAAGAGACAGAGCTGAGCATGACGTCCTTGTATCAAGCAATTCAAGTAGTCAAGAAGTTCGCTTGTGGGAGTTACTGCACACTTGATATGAA TGGCAAGTGCCTAATTATTGGATGGAAGGGAACGCCAATTAATTCCCTTTCTGTTTGGAAGTTCTGTTAG
AA sequence Show only first row Show all	>Potri.010G143400.1 pacid=42799813 polypeptide=Potri.010G143400.1.p locus=Potri.010G143400 ID=Potri.010G143400.1.v4.1 annot-version=v4.1 MGFHCPGLETKGKSYLKPQSLGEGKDNQASFSLEAFQVLKQYEKRVKHLNKEKLEEPSNIIERNSADVLALSTEEIIKVATETSLEYHLQRSDNLSSLSF GCAPFVLTSDGVKYVELIQFLIAAAEKVGQQQFDHVSEMLSMCDQMSSATGNPVQRIVYYFTGALRERIDRETGKITPRGLFTISSNVEEAMVSLSPAIL ECHQRMPFCQIAQLTGIQAIVESAADAKRLHVIDLKIDSGVQWIALMQALAARNDCPTELLKITAFGTTSMSKIQETGKRLAQFAETVNLPFSFNLVMVL NINDLKKESFDIEAGEFIAVYSSLFLKNLLAQPKCLESLMRVIRDLRPEIMVITEPEANHNSQAFKDRFVETLLYFSAIFDCLEACMDRSDPSRMGAEGL YLSYAIKNSIAKEGKERTFECVKIDYWRAYLAEFGMEETELSMTSLYQAIQVVKKFACGSYCTLDMNGKCLIIGWKGTPINSLSVWKFC

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G66350	GRAS	RGL1	RGA-like 1 (.1)		Potri.010G143400 [exp]	0	1
AT3G28345		MDR13, ABCB15	multi-drug resistance 13, ATP-...		Potri.006G074101 [exp]	9.69	0.9809
					Potri.003G179600 [exp]	11.95	0.9493
					Potri.003G126200 [exp]	14.69	0.9808
AT1G66350	GRAS	RGL1	RGA-like 1 (.1)		Potri.001G326000 [exp]	17.49	0.9808
AT5G20150		ATSPX1	ARABIDOPSIS THALIANA SPX DOMA...		Potri.001G193200 [exp]	18.54	0.9645
AT1G68040			S-adenosyl-L-methionine-depend...		Potri.010G104800 [exp]	21.07	0.9804
AT5G59090		ATSBT4.12	subtilase 4.12 (.1.2.3)		Potri.012G133200 [exp]	22.02	0.9802
AT1G21270		WAK2	wall-associated kinase 2 (.1)		Potri.004G191450 [exp]	25.80	0.9800
					Potri.005G130750 [exp]	26.53	0.9798
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Potri.018G033500 [exp]	28.12	0.9800	PtrAMT4-2

Compare expression of checked genes

Potri.010G143400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.