Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03450 183 / 6e-51 GRAS RGL2 RGA-like 2 (.1) AT5G17490 175 / 4e-48 GRAS AtRGL3, RGL3 RGA-like protein 3 (.1) AT1G14920 174 / 1e-47 GRAS RGA2, GAI RESTORATION ON GROWTH ON AMMONIA 2, GIBBERELLIC ACID INSENSITIVE, GRAS family transcription factor family protein (.1) AT1G66350 172 / 4e-47 GRAS RGL1 RGA-like 1 (.1) AT2G01570 172 / 9e-47 GRAS RGA1 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) AT4G17230 144 / 3e-37 GRAS SCL13 SCARECROW-like 13 (.1) AT2G29060 142 / 9e-36 GRAS GRAS family transcription factor (.1) AT5G41920 135 / 1e-34 GRAS GRAS family transcription factor (.1) AT1G07530 138 / 2e-34 GRAS SCL14, ATGRAS2 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) AT5G59450 137 / 4e-34 GRAS SCL11 GRAS family transcription factor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G143700 [exp] 580 / 0 AT1G66350 182 / 2e-50 RGA-like 1 (.1) Potri.010G143600 [exp] 563 / 0 AT3G03450 205 / 7e-59 RGA-like 2 (.1) Potri.010G143400 [exp] 431 / 6e-147 AT1G66350 207 / 1e-60 RGA-like 1 (.1) Potri.002G195600 [exp] 398 / 9e-133 AT3G03450 209 / 2e-60 RGA-like 2 (.1) Potri.010G143200 [exp] 380 / 2e-127 AT1G66350 198 / 8e-58 RGA-like 1 (.1) Potri.014G120000 [exp] 354 / 6e-116 AT3G03450 174 / 1e-47 RGA-like 2 (.1) Potri.008G131700 [exp] 182 / 3e-50 AT2G01570 781 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.010G110700 [exp] 174 / 2e-47 AT2G01570 764 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.017G125200 [exp] 174 / 4e-47 AT2G01570 701 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037758 [exp] 474 / 2e-162 AT3G03450 186 / 6e-52 RGA-like 2 (.1) Lus10016897 [exp] 470 / 8e-161 AT3G03450 189 / 5e-53 RGA-like 2 (.1) Lus10016893 [exp] 450 / 1e-152 AT3G03450 175 / 1e-47 RGA-like 2 (.1) Lus10037756 [exp] 416 / 5e-141 AT1G50420 156 / 5e-42 scarecrow-like 3 (.1) Lus10016891 [exp] 410 / 5e-139 AT3G03450 152 / 2e-40 RGA-like 2 (.1) Lus10016892 [exp] 402 / 1e-135 AT1G50420 155 / 1e-41 scarecrow-like 3 (.1) Lus10022414 [exp] 365 / 5e-121 AT2G01570 169 / 5e-46 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Lus10037753 [exp] 365 / 1e-120 AT1G66350 156 / 8e-42 RGA-like 1 (.1) Lus10016894 [exp] 360 / 6e-120 AT1G66350 155 / 4e-42 RGA-like 1 (.1) Lus10018098 [exp] 353 / 1e-116 AT2G01570 165 / 9e-45 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF03514 [poplar] [flax] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Potri.010G143500.1 pacid=42797469 polypeptide=Potri.010G143500.1.p locus=Potri.010G143500 ID=Potri.010G143500.1.v4.1 annot-version=v4.1 ATGGCAAATGAAAGTTTCTTTCTTGAGGAATCCAATTTTGGTGAAGTCCAAGATGCGTTTAATTCAACGCATAAAAGCTTTGATAGTAAGGAAGGAGAGA AAACACAAGAAATTCGTTTCTTTGGAGCTGATGAAGAATTGGGACAGTCATGGAGCAATGATCCCCAAAGTTCATTCATGTCTCCACCGCTTGAAACATG TTTGGAGGAAATCTCAAAGTTAAGAGGAATTGAAAGTGGAATTGGAGATCTTCTTGAACACAATAAGGAAAAGCAACTCCCATTTTCATTAGCTTCACTT CAGCTGTTACAAAAGTATGGAAATGGCCTCAAACGTTTGAACGATATAGAAAGACGAATTGAGCCGAATATTGATCCATCAACCCCGAAGGTCAAAAAGC AAGAATTGTCAACTGAAGAAATCATGAAGATAGCTGGAGCACGGTTTATCCAGTCTTCCAATACCGATGTTCACTTCAACCATCCATTTGATCTTTCTTT CTCTAGCCTTTCTGCTAGCGAGGCCAAAAATATGGAACTTGCCGAACTTCTCTTTTCTTCTGCTGAGAAATTAAGCAATCAACAATTCAACAGTGCAAGC AGACTGCTGGACCTATGTGATTTCTTGTCTTCCAACACTGGGAATCCAGTTCAACGACTAGTTTACTATTTTTCTAGAGCTCTTCGAGAGAGAATTAATC AAGAAACAAGAAGATCCACGTCAAAGGAGCAGTCATTCAATATATACGAGGCAATTATGACTCCAAGTCTCAGCAACATGGCATTTTACAAACAAAATCC ATTCAACCAGGTTTCACACTTCGCTGGAATTCAAGCCATTGTGGAAAATACGATCGAGTCAAAGAGGATTCACATAATTGATCTTGAAATCAGGAGTGGA CTGCAATGGACAATTTTCATGCAAGCTTTGGTGTCTCAAGAAGCATGGCCCCTTGAACTTCTCAAGATAACTGCCATTGGGACTACCTCAAAGCAGTTGA TCGAGGATACAGGCAAGAGGTTGTTAAGTTTTGCTCAGACCATGAACCTGCCCTGTTCGTTTAATGTGGTTATGGTATCAGACATACTGGATCTCAGAGA AGATCACTTTCAGCTGGATGATGAAGAAACAGTGGCTGTATTTTCTGAATTTTACCTAGCAAGCCTAATTGCATCTCCAAACCGGTTGGATTCCTTAATG AAAGTGATCAGAAACATCAATCCACGTGTAATGGTTATCATTGAAGTTGAGGCAAATCACAACTCCCCAGTTTTTGTAGACCGTTTTGTTGAAACACTTT TCTACCTCAGTGCATTTTTTGATTGCCTCGACACTTGTATGGAACGGGATGATCCAAACAGGGTGATTTCGGAATCAATTTACTTTGGTGAGGGAATAAG GAAAATCTTGGTCGCAGAGGGAGAGGAGAGGAATATTCGGAATGTGAAGATCGATGTATGGAGGGCATGCTTTGCGCGTTTTGAGATGGTAGAGGCAGAA ATGAGCATGTCATCTACATGCCAAGCAAACATCATGGCCAAGAAATTAGCTTGTGGGAAGGCTTGTACACTTAATATGGATGGAAAAAGCCTAATTATTG GGTGGAAGGGTACACCAATCCATTGTCTTTCTGTTTGGAAGTTTGCTTGA
AA sequence Show only first row Show all	>Potri.010G143500.1 pacid=42797469 polypeptide=Potri.010G143500.1.p locus=Potri.010G143500 ID=Potri.010G143500.1.v4.1 annot-version=v4.1 MANESFFLEESNFGEVQDAFNSTHKSFDSKEGEKTQEIRFFGADEELGQSWSNDPQSSFMSPPLETCLEEISKLRGIESGIGDLLEHNKEKQLPFSLASL QLLQKYGNGLKRLNDIERRIEPNIDPSTPKVKKQELSTEEIMKIAGARFIQSSNTDVHFNHPFDLSFSSLSASEAKNMELAELLFSSAEKLSNQQFNSAS RLLDLCDFLSSNTGNPVQRLVYYFSRALRERINQETRRSTSKEQSFNIYEAIMTPSLSNMAFYKQNPFNQVSHFAGIQAIVENTIESKRIHIIDLEIRSG LQWTIFMQALVSQEAWPLELLKITAIGTTSKQLIEDTGKRLLSFAQTMNLPCSFNVVMVSDILDLREDHFQLDDEETVAVFSEFYLASLIASPNRLDSLM KVIRNINPRVMVIIEVEANHNSPVFVDRFVETLFYLSAFFDCLDTCMERDDPNRVISESIYFGEGIRKILVAEGEERNIRNVKIDVWRACFARFEMVEAE MSMSSTCQANIMAKKLACGKACTLNMDGKSLIIGWKGTPIHCLSVWKFA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G03450	GRAS	RGL2	RGA-like 2 (.1)		Potri.010G143500 [exp]	0	1
AT3G50700	C2H2ZnF	ATIDD2	indeterminate(ID)-domain 2 (.1...		Potri.001G069948 [exp]	2.00	0.9829
AT1G22340		ATUGT85A7	UDP-glucosyl transferase 85A7 ...		Potri.007G095000 [exp]	2.00	0.9645
AT1G11310		PMR2, ATMLO2, M...	POWDERY MILDEW RESISTANT 2, MI...		Potri.002G007000 [exp]	3.00	0.9728
AT2G37240			Thioredoxin superfamily protei...		Potri.008G113000 [exp]	4.89	0.9611
					Potri.013G045500 [exp]	5.00	0.9611
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Potri.001G134475 [exp]	8.48	0.9457
AT1G31710			Copper amine oxidase family pr...		Potri.010G088800 [exp]	10.39	0.9091	DAO.2
AT2G20030			RING/U-box superfamily protein...		Potri.018G042501 [exp]	12.40	0.9507
AT5G53742			Protein of unknown function (D...		Potri.009G153700 [exp]	12.84	0.8980
AT5G36110		CYP716A1	"cytochrome P450, family 716, ...		Potri.011G001300 [exp]	13.67	0.9415

Compare expression of checked genes

Potri.010G143500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.