Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03450 205 / 8e-59 GRAS RGL2 RGA-like 2 (.1) AT1G66350 202 / 4e-58 GRAS RGL1 RGA-like 1 (.1) AT5G17490 197 / 4e-56 GRAS AtRGL3, RGL3 RGA-like protein 3 (.1) AT2G01570 193 / 4e-54 GRAS RGA1 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) AT1G14920 191 / 9e-54 GRAS RGA2, GAI RESTORATION ON GROWTH ON AMMONIA 2, GIBBERELLIC ACID INSENSITIVE, GRAS family transcription factor family protein (.1) AT5G59450 153 / 1e-39 GRAS SCL11 GRAS family transcription factor (.1) AT5G41920 149 / 1e-39 GRAS GRAS family transcription factor (.1) AT1G55580 147 / 2e-38 GRAS SCL18, LAS SCARECROW-LIKE 18, Lateral Suppressor, GRAS family transcription factor (.1) AT4G17230 145 / 3e-37 GRAS SCL13 SCARECROW-like 13 (.1) AT3G54220 144 / 1e-36 GRAS SGR1, SCR SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G143700 [exp] 590 / 0 AT1G66350 182 / 2e-50 RGA-like 1 (.1) Potri.010G143500 [exp] 564 / 0 AT3G03450 182 / 8e-51 RGA-like 2 (.1) Potri.010G143400 [exp] 452 / 1e-154 AT1G66350 207 / 1e-60 RGA-like 1 (.1) Potri.002G195600 [exp] 405 / 2e-135 AT3G03450 209 / 2e-60 RGA-like 2 (.1) Potri.010G143200 [exp] 377 / 4e-126 AT1G66350 198 / 8e-58 RGA-like 1 (.1) Potri.014G120000 [exp] 366 / 2e-120 AT3G03450 174 / 1e-47 RGA-like 2 (.1) Potri.008G131700 [exp] 211 / 1e-60 AT2G01570 781 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.010G110700 [exp] 199 / 3e-56 AT2G01570 764 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.004G089800 [exp] 199 / 4e-56 AT2G01570 709 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037758 [exp] 440 / 9e-149 AT3G03450 186 / 6e-52 RGA-like 2 (.1) Lus10016897 [exp] 436 / 3e-147 AT3G03450 189 / 5e-53 RGA-like 2 (.1) Lus10016893 [exp] 427 / 2e-143 AT3G03450 175 / 1e-47 RGA-like 2 (.1) Lus10036459 [exp] 424 / 3e-143 AT3G03450 171 / 1e-46 RGA-like 2 (.1) Lus10022414 [exp] 394 / 4e-132 AT2G01570 169 / 5e-46 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Lus10037753 [exp] 388 / 2e-129 AT1G66350 156 / 8e-42 RGA-like 1 (.1) Lus10018098 [exp] 385 / 9e-129 AT2G01570 165 / 9e-45 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Lus10018100 [exp] 379 / 3e-126 AT2G01570 162 / 1e-43 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Lus10023621 [exp] 375 / 4e-124 AT3G03450 181 / 4e-50 RGA-like 2 (.1) Lus10018099 [exp] 374 / 1e-123 AT2G01570 171 / 1e-46 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF03514 [poplar] [flax] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Potri.010G143600.1 pacid=42797709 polypeptide=Potri.010G143600.1.p locus=Potri.010G143600 ID=Potri.010G143600.1.v4.1 annot-version=v4.1 ATGGAAGGAATGAATAGAGGGAAATATGAACCGGATGGCTGGGAAGAGTTTGGAACTGGGAGTAATGATTGTTTTTCTTCTGATTATGTACTCCCTCACA AAGATTCCTCAGAAGGAGGATGTAGGTCCTCTAAGTTTGAGCAACTAGAACAGCAGAAAGAGCCATTTTTGGATTACAGACAGTTTGAAGATCTGGAGCT CGATGTCCTTTGTCCACTGCTTCCAGCATGTCCAAATCAAATCGCAATGCTTCGAGAAATCCAGGAGGAAATTGAAGATATTGTAGCCCCCAAGATGCAA AATGAACGTCCGTTTTCTTTATCCACACTTGAGCTGCTAAAGGATTATACAAAGGGTCGTAGACGTTTGAACGTTGAACCAAGCGATGCAAATTTGGCAG GCCAGAAGTTGTCAACTGAAGAAATCATGAGATTTGCTGGAGTGAAGTTTATTCAGTCTTCTATCCAAATGGCTGGTGTTGGTTCCCTGCTTAAGTATCC TTATGATCTTTCTTTCTCTGGTCTCTCTGACGAGGAGACCAAAAATGTAGAGCTTGCTGAATGCATGCTGGCTTCCGCTGAAAAAGTAGGCAATCAACAG TATGACAGTGCCAGAAGATTGCTAAATCAATGCGATCTCTTGTCTTCCAATACTGGAAATCCTGTTCAAAGAGTAGTTTATTATTTTTCCGAGGCTCTTC GAAAGAGAATTGATCGAGAAACAGGAAAAGTGGCATCTGAGAGTCTGGAAAGTGACCTTTTTGATGTCTATGAAGCAGTGATGATTCCAAACCCAATTAT CCAGGCATGCTATGAAGGAATTCCATTCTACCAGGTTCCACACTTCGCCGGAACCCAGGCCATTTTAGAGAACATGGCCGAGGCAAAGAGGATTCACGTA ATTGATCTGAAAATCAGTAATGGGCTGCAATGGACTGTCTTGATGCATGCTTTAGCGTCTCGAAATGAATGCCCTCTTGAGCTTCTCAAGATAACTGCTG TGGGGACCAATTCAAAGCAACATATTGAGGATACAGGTAACCGTTTAAAGAGTTTTGCTCAGACAACTAACATACCCTTTTCTTTTAAGATAGTTATGGT ATCAAGCATGCTTGATCTCAAAGAGGATCTCTTTGAATTAGATGCCGATGAACAATTAGCTGTATACTCTGAATATGCACTAAAGAGCTTGATTGTGCAG CCAAATCAGCTGGGTCATTTAATGGAAGTTTTCAGGAGTATCAATCCGTGTGTGTTGGTGATGATTGAAATAGAAGCAAATCACAACTCGAGGGTCTTTG TCCATCGTTTCATTGAAACTCTTTTTTACTTCAGTGCATATTTTGATTGTGTTGATGCATGTCTGGAACATAACGATCCATCTAGCAGGATGATTATAGA ATCCATTTACTTGGGCGAAGGAATCAGGAATATTGTGGCTAGTGAGGGAGAGGAAAGGAAGATTCGAAATGTGAAGATTGATGTGTGGAGAAAATTCCTT GCACAGTTTGGAATGGTAGAGACAGAACTGAGCGAGGCATCCTTGCATCAAGCAAACTTTGTTATCAAGAAATTTGCTTTTGGGAGCTGCTGTACATTTG ATACGGATGGGAAAAGCCTGCTTATTGGGTGGAAGGGCACACCAATTCTTTCACTTTCCACTTGGAAGTTCATGTCACAAGACTAG
AA sequence Show only first row Show all	>Potri.010G143600.1 pacid=42797709 polypeptide=Potri.010G143600.1.p locus=Potri.010G143600 ID=Potri.010G143600.1.v4.1 annot-version=v4.1 MEGMNRGKYEPDGWEEFGTGSNDCFSSDYVLPHKDSSEGGCRSSKFEQLEQQKEPFLDYRQFEDLELDVLCPLLPACPNQIAMLREIQEEIEDIVAPKMQ NERPFSLSTLELLKDYTKGRRRLNVEPSDANLAGQKLSTEEIMRFAGVKFIQSSIQMAGVGSLLKYPYDLSFSGLSDEETKNVELAECMLASAEKVGNQQ YDSARRLLNQCDLLSSNTGNPVQRVVYYFSEALRKRIDRETGKVASESLESDLFDVYEAVMIPNPIIQACYEGIPFYQVPHFAGTQAILENMAEAKRIHV IDLKISNGLQWTVLMHALASRNECPLELLKITAVGTNSKQHIEDTGNRLKSFAQTTNIPFSFKIVMVSSMLDLKEDLFELDADEQLAVYSEYALKSLIVQ PNQLGHLMEVFRSINPCVLVMIEIEANHNSRVFVHRFIETLFYFSAYFDCVDACLEHNDPSSRMIIESIYLGEGIRNIVASEGEERKIRNVKIDVWRKFL AQFGMVETELSEASLHQANFVIKKFAFGSCCTFDTDGKSLLIGWKGTPILSLSTWKFMSQD

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G03450	GRAS	RGL2	RGA-like 2 (.1)		Potri.010G143600 [exp]	0	1
AT1G29500			SAUR-like auxin-responsive pro...		Potri.002G064150 [exp]	7.34	0.7112
AT5G03980			SGNH hydrolase-type esterase s...		Potri.005G024966 [exp]	13.30	0.7412
AT1G70520		ASG6, CRK2	ALTERED SEED GERMINATION 6, cy...		Potri.010G043800 [exp]	19.18	0.7364
AT2G37025		TRFL8	TRF-like 8 (.1.2)		Potri.006G126300 [exp]	36.52	0.6682
AT4G25810		XTH23, XTR6	xyloglucan endotransglucosylas...		Potri.018G094900 [exp]	40.21	0.7145
					Potri.005G051850 [exp]	42.23	0.7141
AT3G11680			Aluminium activated malate tra...		Potri.016G070000 [exp]	46.78	0.7022
AT4G36430			Peroxidase superfamily protein...		Potri.019G125500 [exp]	50.19	0.6890	RIP1.2
AT3G22910			ATPase E1-E2 type family prote...		Potri.008G159100 [exp]	56.56	0.6877	ACA13.1
AT3G61680			alpha/beta-Hydrolases superfam...		Potri.014G097200 [exp]	57.60	0.6748

Compare expression of checked genes

Potri.010G143600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.