Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	GRAS75
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G66350 182 / 2e-50 GRAS RGL1 RGA-like 1 (.1) AT1G14920 177 / 2e-48 GRAS RGA2, GAI RESTORATION ON GROWTH ON AMMONIA 2, GIBBERELLIC ACID INSENSITIVE, GRAS family transcription factor family protein (.1) AT3G03450 176 / 3e-48 GRAS RGL2 RGA-like 2 (.1) AT5G17490 172 / 5e-47 GRAS AtRGL3, RGL3 RGA-like protein 3 (.1) AT2G01570 172 / 2e-46 GRAS RGA1 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) AT3G54220 156 / 1e-40 GRAS SGR1, SCR SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) AT5G41920 152 / 1e-40 GRAS GRAS family transcription factor (.1) AT4G17230 154 / 2e-40 GRAS SCL13 SCARECROW-like 13 (.1) AT5G59450 151 / 6e-39 GRAS SCL11 GRAS family transcription factor (.1) AT1G55580 146 / 3e-38 GRAS SCL18, LAS SCARECROW-LIKE 18, Lateral Suppressor, GRAS family transcription factor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G143600 [exp] 570 / 0 AT3G03450 205 / 7e-59 RGA-like 2 (.1) Potri.010G143500 [exp] 559 / 0 AT3G03450 182 / 8e-51 RGA-like 2 (.1) Potri.002G195600 [exp] 429 / 3e-144 AT3G03450 209 / 2e-60 RGA-like 2 (.1) Potri.010G143400 [exp] 425 / 9e-144 AT1G66350 207 / 1e-60 RGA-like 1 (.1) Potri.010G143200 [exp] 397 / 2e-133 AT1G66350 198 / 8e-58 RGA-like 1 (.1) Potri.014G120000 [exp] 353 / 4e-115 AT3G03450 174 / 1e-47 RGA-like 2 (.1) Potri.001G326000 [exp] 188 / 2e-51 AT1G66350 296 / 2e-92 RGA-like 1 (.1) Potri.008G131700 [exp] 186 / 2e-51 AT2G01570 781 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.017G125200 [exp] 181 / 2e-49 AT2G01570 701 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037758 [exp] 441 / 9e-149 AT3G03450 186 / 6e-52 RGA-like 2 (.1) Lus10016897 [exp] 434 / 3e-146 AT3G03450 189 / 5e-53 RGA-like 2 (.1) Lus10016893 [exp] 416 / 1e-138 AT3G03450 175 / 1e-47 RGA-like 2 (.1) Lus10036459 [exp] 382 / 1e-126 AT3G03450 171 / 1e-46 RGA-like 2 (.1) Lus10001451 [exp] 366 / 1e-121 AT5G17490 179 / 7e-51 RGA-like protein 3 (.1) Lus10037756 [exp] 365 / 1e-120 AT1G50420 156 / 5e-42 scarecrow-like 3 (.1) Lus10016891 [exp] 360 / 1e-118 AT3G03450 152 / 2e-40 RGA-like 2 (.1) Lus10037753 [exp] 361 / 2e-118 AT1G66350 156 / 8e-42 RGA-like 1 (.1) Lus10016894 [exp] 350 / 1e-115 AT1G66350 155 / 4e-42 RGA-like 1 (.1) Lus10002424 [exp] 355 / 3e-115 AT5G17490 161 / 8e-43 RGA-like protein 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF03514 [poplar] [flax] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Potri.010G143700.1 pacid=42797092 polypeptide=Potri.010G143700.1.p locus=Potri.010G143700 ID=Potri.010G143700.1.v4.1 annot-version=v4.1 ATGTTTTCTTTTCAGGATTACAGTTTTGATGGGATTCAAGATATGTTGAGCTCTAAAAGTAGAAGTCGTGAGAGTGTGGAAGGAGTGAACACAAGGAAAC AAAGTCATTTCTATGGATTTGAGGCTGAGGCTGGGGGCGATGCTTATGGTTTTTATCAAGATGTGTCAACGGGGGAAGGATTCTTTTTCTCCAAGTATCA GAATCAAGAACAGAAGCAACAATCATACTTAGATTGCGGACTTCTTGACGACCATAGTTACAATATCCTTTCTCCACAGCTTCAAACATCTCTGGACGGT ATAGAAAAGCTTGATGAAATCCCAGCAGTAACTCAAGATGGTTTACAACCCTGGAAGGAAAATCAGTACCCATTTTCCTTAGCCTCGTTAGAGCTTCATG GTGATCGGCAATTCGATGGTGAAAGAACAGTTGAGAGAAGCAGTGGTGCACCACGCGCAAAAGTGATTGGCACAGAATTATCTACTGAAGAAATCATGAA GATGGCTGGAGCAAAGTTCATCCAATCCTCTTCCCGAATGGTTGATACTGCTTCCATGCTTAACAACCCGTTTGATCTCTTTTTCTCTGGCCTTTCTGAG GAAGCAGCAAAAAATGTGGAGCTTGCTGAACTCCTTCTAGCTTCTGCTGAGAAAGTAGGTAATCAACAGTTTGAACGCGCCAACAGATTTCTAAACTATT GTGAGCACTTGTCTTCCAATGGAGAAAGTCCAGTTCAACGAGTAGTTCACTATTTTTCCGAAGCTCTTCGAGAAAGGATTGACCGAGAAACAGGTAGAAT CACACCAAAATGGCCTGAGAAATCACATTCATTTGATCTTGATAGGGCAATGATGACTCTGAATCCTGCCATCCTAGCATGTTATCAAAATGTTCCATTT TCCCAGGTTGCACATTTCGCTGGAATCCAAGCTATTGTAGAGAAAGTAAACAGGGCTAAGAGAATTCACATAATTGATCTTGAAATTAGGAACGGAGTGC AATGGACAGTATTAATGCAAGCTCTAGTGTCTCAACATGAATCTCCCCTTGAGCTTCTCAAGATAAGTGCCATTGGGTCTACTTCAAAAGAGTTGATTGA GGATACAGGTAAGAGGTTAATGAGTTTTGCCGAGACCATGAATATACCTTTCTCCTTCAAGGTAGTCATGGTATCGGACATGTTAGATCTAAAGAAAGAT CTGTTTGAGCTAGGTGCTGAGGAAGCAGTTGCTGTCTATGCTGAAAATTCTTTGAGGAGCCTGATTGCACTGCCAAATCGTCTGGATTCCATAATGAAAG TGTTCAGAAATATCAACCCACGTATAGTGGTGGTCATGGAAGTTGAGGCCAACAACAATTCACCATCATTTGTGAACCGTTTCATTGAAGCCCTTTTCTT CTACAGTGCTTATTTTGATTGCTTTGATGCTTGTATGGGGCGTGACAGTCCAAACAGGATGATTGCAGAATCAAAGTACATTCGTCAAGAAATCAGAAAT ATTGTGGCCACTGAGGGGGAGGAAAGGAAGATTCGACACGTGAAGCTTGATGTTTGGAGGACATTCTTTGCTCGATTTGCAATGGTGGAAACAGAACTGA GCAAGTCATCCTTGTACCAAGCAAGCCTGTTGCTAAATAAAATTGCTCGTTGGAGTTCTTGTACACTTGACATGAATGAGAAAAGTCTCGTTATTGGGTG GAAGGGTACACCAATGCATTCTCTTTCTGTTTGGAAATTCGACAAGAATCGAAAAGGGTTGAAATGA
AA sequence Show only first row Show all	>Potri.010G143700.1 pacid=42797092 polypeptide=Potri.010G143700.1.p locus=Potri.010G143700 ID=Potri.010G143700.1.v4.1 annot-version=v4.1 MFSFQDYSFDGIQDMLSSKSRSRESVEGVNTRKQSHFYGFEAEAGGDAYGFYQDVSTGEGFFFSKYQNQEQKQQSYLDCGLLDDHSYNILSPQLQTSLDG IEKLDEIPAVTQDGLQPWKENQYPFSLASLELHGDRQFDGERTVERSSGAPRAKVIGTELSTEEIMKMAGAKFIQSSSRMVDTASMLNNPFDLFFSGLSE EAAKNVELAELLLASAEKVGNQQFERANRFLNYCEHLSSNGESPVQRVVHYFSEALRERIDRETGRITPKWPEKSHSFDLDRAMMTLNPAILACYQNVPF SQVAHFAGIQAIVEKVNRAKRIHIIDLEIRNGVQWTVLMQALVSQHESPLELLKISAIGSTSKELIEDTGKRLMSFAETMNIPFSFKVVMVSDMLDLKKD LFELGAEEAVAVYAENSLRSLIALPNRLDSIMKVFRNINPRIVVVMEVEANNNSPSFVNRFIEALFFYSAYFDCFDACMGRDSPNRMIAESKYIRQEIRN IVATEGEERKIRHVKLDVWRTFFARFAMVETELSKSSLYQASLLLNKIARWSSCTLDMNEKSLVIGWKGTPMHSLSVWKFDKNRKGLK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G66350	GRAS	RGL1	RGA-like 1 (.1)		Potri.010G143700 [exp]	0	1	GRAS75
AT5G39190		ATGER2, GLP2A	GERMIN-LIKE PROTEIN 2A, A. THA...		Potri.011G162200 [exp]	9.53	0.9407	GER2.33
AT2G40070			unknown protein		Potri.010G177000 [exp]	9.74	0.9369
AT1G66350	GRAS	RGL1	RGA-like 1 (.1)		Potri.010G143200 [exp]	12.76	0.8767	GRAS79
AT2G15490		UGT73B4	UDP-glycosyltransferase 73B4 (...		Potri.016G057300 [exp]	14.14	0.8626	Pt-ZOG1.8
AT5G54380		THE1	THESEUS1, protein kinase famil...		Potri.005G108300 [exp]	18.38	0.9186
AT3G48660			Protein of unknown function (D...		Potri.017G065444 [exp]	18.70	0.9393
AT3G09270		ATGSTU8	glutathione S-transferase TAU ...		Potri.013G072400 [exp]	22.64	0.9374
AT5G55050			GDSL-like Lipase/Acylhydrolase...		Potri.005G104900 [exp]	26.07	0.9210
AT3G17675			Cupredoxin superfamily protein...		Potri.013G054500 [exp]	28.28	0.9369
AT3G21420		LBO1	LATERAL BRANCHING OXIDOREDUCTA...		Potri.010G201000 [exp]	30.46	0.9136

Compare expression of checked genes

Potri.010G143700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.