Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G28960 381 / 2e-130 Transmembrane amino acid transporter family protein (.1) AT5G15240 372 / 2e-126 Transmembrane amino acid transporter family protein (.1.2) AT2G39130 322 / 4e-105 Transmembrane amino acid transporter family protein (.1) AT5G02180 308 / 5e-100 Transmembrane amino acid transporter family protein (.1) AT3G54830 303 / 5e-98 Transmembrane amino acid transporter family protein (.1) AT5G02170 300 / 5e-97 Transmembrane amino acid transporter family protein (.1.2) AT2G41190 298 / 3e-96 Transmembrane amino acid transporter family protein (.1) AT3G09330 287 / 3e-92 Transmembrane amino acid transporter family protein (.1) AT3G09340 287 / 4e-92 Transmembrane amino acid transporter family protein (.1) AT5G16740 211 / 9e-64 Transmembrane amino acid transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G086500 [exp] 641 / 0 AT3G28960 411 / 4e-142 Transmembrane amino acid transporter family protein (.1) Potri.017G083700 [exp] 396 / 8e-136 AT3G28960 456 / 2e-159 Transmembrane amino acid transporter family protein (.1) Potri.017G083500 [exp] 391 / 8e-134 AT5G15240 448 / 4e-156 Transmembrane amino acid transporter family protein (.1.2) Potri.018G099700 [exp] 335 / 2e-112 AT3G28960 348 / 6e-118 Transmembrane amino acid transporter family protein (.1) Potri.010G226000 [exp] 323 / 1e-105 AT2G39130 708 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.008G036300 [exp] 310 / 1e-100 AT2G39130 691 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.016G100300 [exp] 298 / 3e-96 AT5G02180 587 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.006G038700 [exp] 286 / 9e-93 AT2G41190 459 / 9e-159 Transmembrane amino acid transporter family protein (.1) Potri.014G146700 [exp] 207 / 8e-62 AT5G16740 430 / 3e-148 Transmembrane amino acid transporter family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012824 [exp] 529 / 0 AT5G15240 425 / 3e-147 Transmembrane amino acid transporter family protein (.1.2) Lus10030469 [exp] 504 / 2e-178 AT5G15240 405 / 4e-139 Transmembrane amino acid transporter family protein (.1.2) Lus10005239 [exp] 382 / 3e-130 AT5G15240 509 / 4e-180 Transmembrane amino acid transporter family protein (.1.2) Lus10030683 [exp] 370 / 1e-125 AT5G15240 510 / 2e-180 Transmembrane amino acid transporter family protein (.1.2) Lus10023029 [exp] 334 / 6e-113 AT3G28960 280 / 6e-92 Transmembrane amino acid transporter family protein (.1) Lus10010855 [exp] 291 / 2e-92 AT5G02170 501 / 2e-171 Transmembrane amino acid transporter family protein (.1.2) Lus10003817 [exp] 287 / 5e-91 AT2G41190 615 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10039190 [exp] 280 / 5e-89 AT2G39130 652 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10010457 [exp] 283 / 1e-84 AT5G04140 2772 / 0.0 FERREDOXIN-DEPENDENT GLUTAMATE SYNTHASE 1, FERREDOXIN-DEPENDENT GLUTAMATE SYNTHASE, glutamate synthase 1 (.1.2) Lus10038702 [exp] 225 / 3e-69 AT2G39130 556 / 0.0 Transmembrane amino acid transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [poplar] [flax] APC PF01490 [poplar] [flax] Aa_trans Transmembrane amino acid transporter protein
Representative CDS sequence Show only first row Show all	>Potri.010G169000.1 pacid=42799575 polypeptide=Potri.010G169000.1.p locus=Potri.010G169000 ID=Potri.010G169000.1.v4.1 annot-version=v4.1 ATGGAGTGCCAAAAAGTTAACGAGGTGGAGAGGCAAAACCAGCTCCCACAACCTGAGGTGCCAAACAGGGGCACCCCCTTCCTTGGAACTTGTTTTAATG GGCTCAATGCTTTATCAGGTGTTGGGATACTCTCAATTCCCTATGCGCTTTCTCAAGGAGGATGGCTGAGCTTAATACTGCTTTTTCTAGTGGCAGTTCT CTGTTGGTATACAGGATTACTTCTAAGACGTTGTATGGATTCGGACCCACTCATCAGAAGTTATCCTGATATAGGAGAGCGAGCTTTTGGATACAAAGGA AGAACTCTAGTATCCATCTTCATGTATCTTGAGCTATACTTAGTAGCTGTTGAATTTCTGATACTAGAAGGTGACAATTTAGACAGGTTGTTTCCAAACA CAGGTGTCAAATTTGCTGGACTATACATTGGAGGTAAAACAGCCTTTGTTCTGCTCACTGCGCTTGTAATCCTGCCAACGACATGGTTAAAGAGTCTAGG CATGCTGGCCTATGTCTCTGCTGGTGGGGTTATGGCTTCTGTTCTTTTGGTTGGTTGTGTTTTGTGGGTTGGTGCAGTTGATGGTGTGGGGTTCCATGAA AATGGTGTGCTTTTGAATGGGGGAGGATTACCTACTACTTTAAGCTTGTTCACCTTTTGTTACTGTGGTCATGCAGTTTTCCCCACGTTGTGCAATTCCA TGAAAGACAGAAGCCAATTCTCCAAGGTTTTACTTATCTGCTTTGTTACAAGCACCATCACTTATGGATCAATGGCAGTTCTAGGCTACCTCATGTATGG AGAATATTTGAAATCTCAGGTGACCTTAAATCTTCCAATCAGAAAAATTGGTTCAAAAATAGCAATATATACCACTCTAATCAATCCCCTGACCAAATAT GCGGTCATTACTGCTCCAATTGCTACAGCTATTGAGGACACATTGGTTTTCCGCAACAGCAGATATCTCAGTATCCTCATCAGAACTGTGATTGTGATCA GCACGGTCGTTGTGGCACTAACAATTCCCTTTTTTGGATACGTGATGGCTTTTATTGGTGCGTTTTTGAGTGTCACTGTCTCCATGTTGTTACCCTGCTT GTGCTACCTTAGGATTGACAAATCTGCTAGAAGATTTGGGTTAGAGTTGGTGTTAATTGTGGGAATATTGATAGTCGGGTCTTTTGTGGGTATAATAGGT ACATATACTTCTATCAAACAAATTGTAAAACATCTCTGA
AA sequence Show only first row Show all	>Potri.010G169000.1 pacid=42799575 polypeptide=Potri.010G169000.1.p locus=Potri.010G169000 ID=Potri.010G169000.1.v4.1 annot-version=v4.1 MECQKVNEVERQNQLPQPEVPNRGTPFLGTCFNGLNALSGVGILSIPYALSQGGWLSLILLFLVAVLCWYTGLLLRRCMDSDPLIRSYPDIGERAFGYKG RTLVSIFMYLELYLVAVEFLILEGDNLDRLFPNTGVKFAGLYIGGKTAFVLLTALVILPTTWLKSLGMLAYVSAGGVMASVLLVGCVLWVGAVDGVGFHE NGVLLNGGGLPTTLSLFTFCYCGHAVFPTLCNSMKDRSQFSKVLLICFVTSTITYGSMAVLGYLMYGEYLKSQVTLNLPIRKIGSKIAIYTTLINPLTKY AVITAPIATAIEDTLVFRNSRYLSILIRTVIVISTVVVALTIPFFGYVMAFIGAFLSVTVSMLLPCLCYLRIDKSARRFGLELVLIVGILIVGSFVGIIG TYTSIKQIVKHL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G28960			Transmembrane amino acid trans...		Potri.010G169000 [exp]	0	1
AT1G61590			Protein kinase superfamily pro...		Potri.001G128500 [exp]	8.00	0.9406
AT1G22370		ATUGT85A5	UDP-glucosyl transferase 85A5 ...		Potri.016G021600 [exp]	13.56	0.9273
AT5G01950			Leucine-rich repeat protein ki...		Potri.006G111100 [exp]	18.02	0.9077
AT1G68940			Armadillo/beta-catenin-like re...		Potri.010G136500 [exp]	21.63	0.9236
AT4G20390			Uncharacterised protein family...		Potri.011G154900 [exp]	22.04	0.9126
AT5G58860		CYP86A1	"cytochrome P450, family 86, s...		Potri.009G043700 [exp]	23.23	0.9111	CYP86A19,Pt-CYP86.4
AT2G35770		SCPL28	serine carboxypeptidase-like 2...		Potri.008G041700 [exp]	24.73	0.9036
AT2G35930		PUB23	plant U-box 23 (.1)		Potri.002G174500 [exp]	28.21	0.9183
AT1G30760			FAD-binding Berberine family p...		Potri.001G463400 [exp]	28.98	0.9169
AT3G05390			unknown protein		Potri.017G135100 [exp]	29.46	0.9125

Compare expression of checked genes

Potri.010G169000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.