Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79560 1563 / 0 EMB36, EMB156, EMB1047, FTSH12 EMBRYO DEFECTIVE 36, EMBRYO DEFECTIVE 156, EMBRYO DEFECTIVE 1047, FTSH protease 12 (.1) AT1G50250 270 / 8e-78 FTSH1 FTSH protease 1 (.1) AT5G42270 268 / 2e-77 FTSH5, VAR1 VARIEGATED 1, FtsH extracellular protease family (.1) AT5G15250 234 / 2e-65 FTSH6, ATFTSH6 FTSH protease 6 (.1.2) AT1G06430 231 / 2e-64 FTSH8 FTSH protease 8 (.1) AT2G30950 231 / 2e-64 FTSH2, VAR2 VARIEGATED 2, FtsH extracellular protease family (.1) AT2G26140 212 / 1e-57 FTSH4 FTSH protease 4 (.1) AT5G53170 198 / 1e-52 FTSH11 FTSH protease 11 (.1) AT5G58870 188 / 3e-49 FTSH9 FTSH protease 9 (.1) AT2G29080 183 / 1e-47 FTSH3 FTSH protease 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G012000 [exp] 279 / 2e-81 AT5G42270 1094 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Potri.005G249200 [exp] 276 / 2e-80 AT5G42270 1077 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Potri.017G084000 [exp] 247 / 3e-70 AT5G15250 959 / 0.0 FTSH protease 6 (.1.2) Potri.014G139500 [exp] 234 / 4e-65 AT2G30950 1057 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1) Potri.002G215100 [exp] 232 / 1e-64 AT2G30950 1040 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1) Potri.006G227700 [exp] 217 / 2e-59 AT2G26140 1066 / 0.0 FTSH protease 4 (.1) Potri.012G000700 [exp] 199 / 5e-53 AT5G53170 1076 / 0.0 FTSH protease 11 (.1) Potri.015G020700 [exp] 199 / 7e-53 AT5G53170 1096 / 0.0 FTSH protease 11 (.1) Potri.002G220366 [exp] 169 / 5e-47 AT1G06430 405 / 1e-138 FTSH protease 8 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031169 [exp] 1417 / 0 AT1G79560 1356 / 0.0 EMBRYO DEFECTIVE 36, EMBRYO DEFECTIVE 156, EMBRYO DEFECTIVE 1047, FTSH protease 12 (.1) Lus10031745 [exp] 1413 / 0 AT1G79560 1357 / 0.0 EMBRYO DEFECTIVE 36, EMBRYO DEFECTIVE 156, EMBRYO DEFECTIVE 1047, FTSH protease 12 (.1) Lus10016003 [exp] 280 / 2e-81 AT5G42270 1129 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Lus10012277 [exp] 264 / 4e-78 AT1G50250 935 / 0.0 FTSH protease 1 (.1) Lus10021824 [exp] 270 / 7e-78 AT5G42270 934 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Lus10001054 [exp] 236 / 4e-66 AT2G30950 1154 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1) Lus10001420 [exp] 236 / 3e-65 AT2G30950 1155 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1) Lus10034572 [exp] 220 / 1e-61 AT5G42270 791 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Lus10001060 [exp] 202 / 8e-54 AT5G53170 1090 / 0.0 FTSH protease 11 (.1) Lus10039334 [exp] 202 / 1e-53 AT5G53170 1087 / 0.0 FTSH protease 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00004 [poplar] [flax] AAA ATPase family associated with various cellular activities (AAA) CL0126 [poplar] [flax] Peptidase_MA PF01434 [poplar] [flax] Peptidase_M41 Peptidase family M41
Representative CDS sequence Show only first row Show all	>Potri.010G171300.1 pacid=42799245 polypeptide=Potri.010G171300.1.p locus=Potri.010G171300 ID=Potri.010G171300.1.v4.1 annot-version=v4.1 ATGAACCTCACACTTCCTCACAAACAAAACCCACTTCTCCACTCTCCAATTCTTCTAACCCAAACAGCTCAAAACCCCCCAATTCTCTTTCAATTACCCA CAAATCAAAGACCCCGAATTTCGCGCAAAAAACCCATCTTTAGAATCTATTCCTCTGCCAATGGAAATGGTTCTGACGGGTTTTCTTGGCCGATTCTCAC TCGCTCTGTTCGCCTGGGGACGGAGCGGTTTTTGTTGAAACTCGGTGAGTCCGTCAAGAAGGAAACTGGGTTTGATGTAGAAGGGGGTAATGTGAAGGTT GGTGAGTTTGTGGAGCGCATTAAGGGTGATATCAAGAAAGGTGACGCTGCATTGACTCGGTTCAGGACTGAATTGTTAACTGATTTCGTGGATTGGAATA GATGGGAGCGTTGGAAGGACTTAAAGAATTGGGAGCCTAAACGAGTTGGTGCTTTGTTGCTCTATATTTTTGCTGTGATGTTTTCTTGTCAAAGAATATA TGTTGCCATTCGAGCTCCTTTTCTAGACCAAGAAAGAAGAGAGTTAACAGAAGCTTATATGGAGGCTTTGATTCCTGAACCATCTCCTATTAATATTAGA AAGTTTAAAAAGGGTATGTGGAGAAATACAACACCAAAAGGCCTGAAAATGAAGAAGTTCATTGAAGGACCTGATGGAACACTGATTCAGGACACTTCCT ATGTTGGAGAAGACGCATGGGAAGATGATCAGGAACCTCCTCAGGAAAATATGAAACAAATCATTGACAAAGATGTGAGATTAAATGCAGAACTAAAGAA AAACTTGAAAGAAGACTTGGGCATTTTAGGTGAAGTTCAGGAAAGTAAAGGAACGTGGCGTGAGAGGCTTCATATATGGAAGGAGGTTCTCAAAAAGGAG AAATTTGCTGAGCAATTAGATTCCTCAAATGCCAAATATGTGGTTGAGTTTGACATGAAAGAAGTTGAAAACAGCCTTCGCAAGGATGTGGTGGAAAAGG TTACAGACACGCAAGGAGCCAGGGCTTTATGGATATCTAAGAGATGGTGGCGCTACCGTCCCAAACTTCCATACACTTATTTTCTTCAGAAGCTTGATTC CTCCGAGGTTGCTGCTGTTGTCTTCACAGAGGACCTGAAAAGACTTTATGTAACTATGAAAGAAGGTTTTCCACTAGAATATGTTGTGGATATTCCCCTC GATCCATACTTGTTTGAGGTTATCTCAGGTTCTGGCGTAGAAGTAGATCTCCTTCAGAAAAGGCAGATACATTACTTTCTGAAAGTTCTGATTGCATTGG TGCCTGGATTACTGATCCTGTGGCTCATAAGGGAGGCCGCTATGCTATTACATATCACTTCTAAGCGATTTCTTTACAAAAAGTACAATCAACTTTTTGA TATGGCATACGCGGAAAATTTTATCCTGCCAGTTGGAGATGTTGGTGAAACCAAAACAATGTATAAAGAAGTGGTACTTGGGGGCGATGTCTGGGACCTT CTTGATGAGATAATGATCTACATGGGCAATCCCATGCAATACTATGAAAGAGGGGTGAAGTTTGTTCGGGGTGTCCTTCTCTCGGGACCTCCTGGAACAG GAAAGACACTTTTTGCACGGACACTTGCCAAGGAAAGTGGATTGCCTTTTGTTTTTGCTTCTGGTGCAGAGTTTACAGATAGTGAGAAAAGTGGAGCTGC AAGGATCAATGAGATGTTTTCTATTGCTAGGAGAAATGCTCCTTGTTTTGTGTTTGTGGATGAAATTGATGCCATTGCTGGAAGGCATGCTAGGAAGGAT CCACGAAGAAGGGCAACATTCGAGGCTCTGATTGCGCAGCTTGATGGGGAGAAGGAAAAAACCGGCGTAGATCGGTTTTCTCTTAGACAGGCTGTGATAT TCATTTGTGCTACCAATAGGCCAGATGAATTGGACCTGGAGTTTGTTCGCCCTGGACGTATTGACAGACGTTTGTACATTGGATTGCCCGATGCAAAGCA ACGAGTACAAATTTTTGGTGTTCATAGTATAGGAAAGCAACTTGCGGAAGATGTGGACTTTGGGAAGCTTGTGTTCCGTACTGTTGGCTTCTCGGGAGCA GATATTCGGAACCTGGTCAATGAAGCTGCAATTATGTCTGTAAGGAAAGGGCATTCCAAGGTCTACCAGCAAGACCTCGTTGATGTGTTAGATAAACAAT TGCTTGAGGGCATGGGTGTACTTCTTACAGAGGAAGAACAGCAGAAATGTGAACAAAACGTTTCATTTGAAAAGAAGAGCCTGCTGGCTGTACATGAAGC TGGTCATATAGTGTTAGCTCACTTGTTTCCTCGCTTTGATTGGCATGCATTTTCTCAGCTCCTTCCTGGAGGCAAGGAAACTGCAATATCTGTTTTCTAC CCACGAGAAGATATGATTGACCAAGGATATACAACCTTTGGCTACATGAAGATGCAAATGGTGGTAGCTCATGGTGGACGTTGTGCTGAACACCTTGTGT ATGGTGAGGATATTACCGATGGAGGAAGTGATGATCTTGAAAAGATAACAAAGATCGCTAGAGAGATGGCAATCAGCCCTCAAAATGCAAAGCTGGGCCT CACTGCTTTAACAAGAAGAGTTGGACTCATGGATAGACCAGATAATCCAGATGGCGAGCTGATAAAATACAGGTGGGATGATCCTCATGTGATTCCTGCC AATATGACACTTGAAGTATCTGAGCTATTTACTAGAGAAATGACAAGGTATGTTGAAGAGACTGAAGAACTTGCGATGGAAGGATTGAGGAACAACAGGC ATATACTGGATGTGATTACCAAGGAACTATTGGAGAAGTCAAGGATAACTGGATTGGAAGTTGAGGATCTAATGAAGGAGCTCTCTCCAACAATGTTCGA GGATTTTGTAAAGCCATTCCAGATAAACTTAGATGAGGAGGGACCGTTGCCACACAATGACAAGTTGCGATATCAACCACTGGACATATATCCTGCACCA CTCCACCGATAA
AA sequence Show only first row Show all	>Potri.010G171300.1 pacid=42799245 polypeptide=Potri.010G171300.1.p locus=Potri.010G171300 ID=Potri.010G171300.1.v4.1 annot-version=v4.1 MNLTLPHKQNPLLHSPILLTQTAQNPPILFQLPTNQRPRISRKKPIFRIYSSANGNGSDGFSWPILTRSVRLGTERFLLKLGESVKKETGFDVEGGNVKV GEFVERIKGDIKKGDAALTRFRTELLTDFVDWNRWERWKDLKNWEPKRVGALLLYIFAVMFSCQRIYVAIRAPFLDQERRELTEAYMEALIPEPSPINIR KFKKGMWRNTTPKGLKMKKFIEGPDGTLIQDTSYVGEDAWEDDQEPPQENMKQIIDKDVRLNAELKKNLKEDLGILGEVQESKGTWRERLHIWKEVLKKE KFAEQLDSSNAKYVVEFDMKEVENSLRKDVVEKVTDTQGARALWISKRWWRYRPKLPYTYFLQKLDSSEVAAVVFTEDLKRLYVTMKEGFPLEYVVDIPL DPYLFEVISGSGVEVDLLQKRQIHYFLKVLIALVPGLLILWLIREAAMLLHITSKRFLYKKYNQLFDMAYAENFILPVGDVGETKTMYKEVVLGGDVWDL LDEIMIYMGNPMQYYERGVKFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEKSGAARINEMFSIARRNAPCFVFVDEIDAIAGRHARKD PRRRATFEALIAQLDGEKEKTGVDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFGVHSIGKQLAEDVDFGKLVFRTVGFSGA DIRNLVNEAAIMSVRKGHSKVYQQDLVDVLDKQLLEGMGVLLTEEEQQKCEQNVSFEKKSLLAVHEAGHIVLAHLFPRFDWHAFSQLLPGGKETAISVFY PREDMIDQGYTTFGYMKMQMVVAHGGRCAEHLVYGEDITDGGSDDLEKITKIAREMAISPQNAKLGLTALTRRVGLMDRPDNPDGELIKYRWDDPHVIPA NMTLEVSELFTREMTRYVEETEELAMEGLRNNRHILDVITKELLEKSRITGLEVEDLMKELSPTMFEDFVKPFQINLDEEGPLPHNDKLRYQPLDIYPAP LHR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G79560		EMB36, EMB156, ...	EMBRYO DEFECTIVE 36, EMBRYO DE...		Potri.010G171300 [exp]	0	1
AT2G28605			Photosystem II reaction center...		Potri.005G068500 [exp]	1.41	0.9033
AT3G18840			Tetratricopeptide repeat (TPR)...		Potri.004G152000 [exp]	3.46	0.8847
AT5G16715		EMB2247	embryo defective 2247, ATP bin...		Potri.017G124500 [exp]	3.87	0.8923
AT3G21470			Pentatricopeptide repeat (PPR-...		Potri.002G072500 [exp]	4.24	0.8639
AT1G29900		VEN3, CARB	VENOSA 3, carbamoyl phosphate ...		Potri.010G023100 [exp]	4.89	0.8938	Pt-CARB.1
AT5G19620		TOC75-V, EMB213...	translocon at the outer envelo...		Potri.003G204900 [exp]	5.91	0.8739
AT5G64580		EMB3144	EMBRYO DEFECTIVE 3144, AAA-typ...		Potri.005G059700 [exp]	7.74	0.8576
AT2G39810		HOS1	HIGH EXPRESSION OF OSMOTICALLY...		Potri.001G155200 [exp]	12.00	0.8212	Pt-HOS1.2
AT1G08070		EMB3102, OTP82	ORGANELLE TRANSCRIPT PROCESSIN...		Potri.005G011000 [exp]	13.26	0.8227
AT1G30680			toprim domain-containing prote...		Potri.001G461300 [exp]	13.26	0.8703

Compare expression of checked genes

Potri.010G171300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.