Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39830 799 / 0 Cupredoxin superfamily protein (.1) AT5G21105 561 / 0 Plant L-ascorbate oxidase (.1.2.3) AT5G21100 551 / 0 Plant L-ascorbate oxidase (.1) AT5G03260 274 / 1e-84 LAC11 laccase 11 (.1) AT5G05390 259 / 7e-79 LAC12 laccase 12 (.1) AT5G01050 259 / 2e-78 Laccase/Diphenol oxidase family protein (.1) AT2G38080 251 / 7e-76 ATLMCO4, IRX12, LAC4 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) AT2G46570 248 / 8e-75 LAC6 laccase 6 (.1) AT5G01040 244 / 3e-73 LAC8 laccase 8 (.1) AT5G01190 244 / 4e-73 LAC10 laccase 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G088222 [exp] 874 / 0 AT4G39830 847 / 0.0 Cupredoxin superfamily protein (.1) Potri.005G079400 [exp] 870 / 0 AT4G39830 828 / 0.0 Cupredoxin superfamily protein (.1) Potri.007G088358 [exp] 858 / 0 AT4G39830 831 / 0.0 Cupredoxin superfamily protein (.1) Potri.001G454700 [exp] 645 / 0 AT4G39830 619 / 0.0 Cupredoxin superfamily protein (.1) Potri.001G219300 [exp] 591 / 0 AT5G21105 758 / 0.0 Plant L-ascorbate oxidase (.1.2.3) Potri.009G159700 [exp] 590 / 0 AT5G21105 760 / 0.0 Plant L-ascorbate oxidase (.1.2.3) Potri.007G088290 [exp] 375 / 4e-128 AT4G39830 363 / 1e-123 Cupredoxin superfamily protein (.1) Potri.008G064000 [exp] 281 / 3e-87 AT2G38080 728 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) Potri.010G193100 [exp] 280 / 7e-87 AT2G38080 771 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009603 [exp] 843 / 0 AT4G39830 754 / 0.0 Cupredoxin superfamily protein (.1) Lus10022504 [exp] 842 / 0 AT4G39830 828 / 0.0 Cupredoxin superfamily protein (.1) Lus10000871 [exp] 841 / 0 AT4G39830 756 / 0.0 Cupredoxin superfamily protein (.1) Lus10016808 [exp] 833 / 0 AT4G39830 824 / 0.0 Cupredoxin superfamily protein (.1) Lus10025538 [exp] 588 / 0 AT5G21105 792 / 0.0 Plant L-ascorbate oxidase (.1.2.3) Lus10026753 [exp] 583 / 0 AT5G21105 787 / 0.0 Plant L-ascorbate oxidase (.1.2.3) Lus10026512 [exp] 298 / 8e-94 AT5G03260 919 / 0.0 laccase 11 (.1) Lus10023189 [exp] 286 / 4e-89 AT5G03260 930 / 0.0 laccase 11 (.1) Lus10040697 [exp] 278 / 4e-86 AT2G38080 828 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) Lus10002227 [exp] 278 / 6e-86 AT5G03260 926 / 0.0 laccase 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [poplar] [flax] CU_oxidase PF00394 [poplar] [flax] Cu-oxidase Multicopper oxidase CL0026 [poplar] [flax] CU_oxidase PF07731 [poplar] [flax] Cu-oxidase_2 Multicopper oxidase CL0026 [poplar] [flax] CU_oxidase PF07732 [poplar] [flax] Cu-oxidase_3 Multicopper oxidase
Representative CDS sequence Show only first row Show all	>Potri.010G171700.1 pacid=42799111 polypeptide=Potri.010G171700.1.p locus=Potri.010G171700 ID=Potri.010G171700.1.v4.1 annot-version=v4.1 ATGATTGAGCCTGTAGAAAGCAAGGGCTATTTTGTGAGGCTGCTGACTTTGTTTCACTTAATTTGTTTGATCAATTTCTCGAGTGTCGAGGCTAGAACTC GTCACCACAAATGGGAGGTCAAGTATGAATACAAGTCCCCAGATTGCTATAAGAAGCTGATTATCACCATAAATGGGAGATCTCCAGGACCAACAATTTT TGCACAGCAAGGTGATACTGTTGTTGTTGAGCTAAAAAATAGTTTGTGGACAGAAAATGTTGCTGTTCACTGGCATGGAATCAGACAGCTCGGAACGCCT TGGAGTGATGGAACAGAAGGGGTTACCCAGTGTCCGATTTTACCTGGAGAAACCTTTATTTACAAATTTGTTGTAGACAGGGCTGGGACATACCTGTATC ATGGGCATTATGGAATGCAAAGAGCAGCTGGATTATATGGATCCATCATTGTATCGCTTCCTGAAGGAGTTTCTGAACCCTTTTCCTATGATTATGATCA CAACATAATCTTAAGTGATTGGTACCACGCAAGCACTAATGAACAAGCTGCCGGCCTATCTGCCATACCCTTTGTTTTTGTCGGAGAGCCACAGTCACTT CTTATATATGGAAGAGGGAAATACAACTGCTCTCTTTCCACTGCTTCAGGCATTGCAGCTGGAGTTTGCAATACCACAAATCCTGAATGCTCTCCTTATT CGCTGACTGTTGTTCCTGGAAAAACATATCGACTGAGGATTGGCAGCTTGACTTCCCTGTCAGCTCTTAGTTTTGAAATTGAGGGCCATGACATGACTGT TGTAGAAGCGGACGGGAACTATGTAGAACCATTTGCTATAAGAAACCTCTACATCTACTCTGGTGAGACGTACTCTGTGTTAGTAAAAGCTGATCAAGAT TCTTCAAGAAACTACTGGGCAACTATTAATGTAGTTGCTCGCAAACCGGCAACACCAACTGGTTTGGCCATTTTCAACTACTATCCAAACCATCCACAAA AGCAGCCTCCAACAGTTCCAACCACAGGGCCTCTTTGGAATGATACAACATCAAGGTTGGCTCAAAGTCTTGCATTTAAGGCTCGTCAAGGTTTCATTAA CACCCCTCCTGTCACTTCAGATAGAGTGATCGTGCTTCTAAACACACAAAACAAGATTGATGGCCATTTTAAATGGTCCTTAAACAACCTATCTCTCATA CTTCCTCAGACCCCATACCTCATTGCACTTAGAGAAAATTTGACCGATGCATTTGTTCAAGACCCTCCTCCTGATGGATATGACTTCGCAAACTATGACA TACATAGTGTGGCAAAAAATGTTAATGCTACTTCAAGCAACCGAATATATAGGCTACGGTTCAATTCAACAGTCGATGTCATCCTACAAAATGCTAATTC TATGACCGTGAACAACAGTGAGACACATCCATGGCATCTTCATGGGCATGATTTTTGGGTCCTGGGGTACGGTACAGGCAAGTATAACTTGTCTCGTGAC TGGAGAAAGTACAATGTGGTCAATCCCATTATGAAGAACACAGCACCTCTGCATCCTTATGGATGGACTGCTCTGAGGTTTAGAGCTGATAATCCAGGTG TTTGGGCCTTTCATTGTCATGTCGAGTCTCATTTCTACATGGGCATGGGTGTGGTGTTCGAAGAAGGGATAGAGAAGGGGGGTGAGTTGCCTTCATCCAT TAGGGGATGTGGTGAATCTGAAGGTCACCATCGACCATAG
AA sequence Show only first row Show all	>Potri.010G171700.1 pacid=42799111 polypeptide=Potri.010G171700.1.p locus=Potri.010G171700 ID=Potri.010G171700.1.v4.1 annot-version=v4.1 MIEPVESKGYFVRLLTLFHLICLINFSSVEARTRHHKWEVKYEYKSPDCYKKLIITINGRSPGPTIFAQQGDTVVVELKNSLWTENVAVHWHGIRQLGTP WSDGTEGVTQCPILPGETFIYKFVVDRAGTYLYHGHYGMQRAAGLYGSIIVSLPEGVSEPFSYDYDHNIILSDWYHASTNEQAAGLSAIPFVFVGEPQSL LIYGRGKYNCSLSTASGIAAGVCNTTNPECSPYSLTVVPGKTYRLRIGSLTSLSALSFEIEGHDMTVVEADGNYVEPFAIRNLYIYSGETYSVLVKADQD SSRNYWATINVVARKPATPTGLAIFNYYPNHPQKQPPTVPTTGPLWNDTTSRLAQSLAFKARQGFINTPPVTSDRVIVLLNTQNKIDGHFKWSLNNLSLI LPQTPYLIALRENLTDAFVQDPPPDGYDFANYDIHSVAKNVNATSSNRIYRLRFNSTVDVILQNANSMTVNNSETHPWHLHGHDFWVLGYGTGKYNLSRD WRKYNVVNPIMKNTAPLHPYGWTALRFRADNPGVWAFHCHVESHFYMGMGVVFEEGIEKGGELPSSIRGCGESEGHHRP

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G39830			Cupredoxin superfamily protein...		Potri.010G171700 [exp]	0	1
AT4G23030			MATE efflux family protein (.1...		Potri.012G133500 [exp]	1.73	0.8316
AT3G26040			HXXXD-type acyl-transferase fa...		Potri.008G034300 [exp]	2.82	0.8193
AT2G02010		GAD4	glutamate decarboxylase 4 (.1)		Potri.010G100500 [exp]	3.60	0.8558
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.004G024800 [exp]	5.91	0.8020
AT5G13700		ATPAO1, APAO	polyamine oxidase 1 (.1)		Potri.015G074600 [exp]	8.12	0.8045
AT5G01210			HXXXD-type acyl-transferase fa...		Potri.006G097500 [exp]	10.95	0.7968
AT1G66480		PMI2	plastid movement impaired 2 (....		Potri.017G128800 [exp]	15.49	0.7634
AT5G38280		PR5K	PR5-like receptor kinase (.1)		Potri.004G014700 [exp]	15.58	0.7378
					Potri.008G069350 [exp]	27.65	0.7161
AT1G18270			ketose-bisphosphate aldolase c...		Potri.015G037000 [exp]	32.20	0.7515

Compare expression of checked genes

Potri.010G171700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.