Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79430 356 / 3e-122 GARP WDY, APL WOODY, ALTERED PHLOEM DEVELOPMENT, Homeodomain-like superfamily protein (.1.2) AT4G13640 204 / 9e-64 GARP UNE16 unfertilized embryo sac 16, Homeodomain-like superfamily protein (.1.2) AT3G24120 203 / 4e-63 GARP Homeodomain-like superfamily protein (.1.2) AT3G12730 196 / 2e-61 GARP Homeodomain-like superfamily protein (.1) AT3G04030 180 / 4e-53 GARP Homeodomain-like superfamily protein (.1.2.3) AT5G18240 179 / 1e-52 GARP MYR1, ATMYR1 ARABIDOPSIS MYB-RELATED PROTEIN 1, myb-related protein 1 (.1.2.3.4.5) AT1G69580 161 / 1e-46 GARP Homeodomain-like superfamily protein (.1.2) AT2G01060 147 / 9e-42 GARP myb-like HTH transcriptional regulator family protein (.1.2) AT5G45580 141 / 9e-40 GARP Homeodomain-like superfamily protein (.1) AT4G28610 125 / 3e-32 GARP ATPHR1, PHR1 phosphate starvation response 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G081800 [exp] 612 / 0 AT1G79430 335 / 6e-114 WOODY, ALTERED PHLOEM DEVELOPMENT, Homeodomain-like superfamily protein (.1.2) Potri.011G023600 [exp] 207 / 6e-65 AT1G79430 180 / 1e-54 WOODY, ALTERED PHLOEM DEVELOPMENT, Homeodomain-like superfamily protein (.1.2) Potri.017G054800 [exp] 204 / 3e-63 AT4G13640 338 / 6e-117 unfertilized embryo sac 16, Homeodomain-like superfamily protein (.1.2) Potri.001G314800 [exp] 202 / 1e-62 AT4G13640 345 / 2e-119 unfertilized embryo sac 16, Homeodomain-like superfamily protein (.1.2) Potri.019G032700 [exp] 180 / 8e-53 AT3G04030 449 / 2e-157 Homeodomain-like superfamily protein (.1.2.3) Potri.013G060200 [exp] 179 / 2e-52 AT3G04030 462 / 3e-162 Homeodomain-like superfamily protein (.1.2.3) Potri.008G087600 [exp] 169 / 2e-49 AT1G69580 276 / 2e-91 Homeodomain-like superfamily protein (.1.2) Potri.010G167901 [exp] 164 / 1e-47 AT1G69580 262 / 5e-86 Homeodomain-like superfamily protein (.1.2) Potri.001G133400 [exp] 158 / 5e-46 AT5G45580 220 / 2e-71 Homeodomain-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001754 [exp] 285 / 4e-93 AT1G79430 292 / 2e-95 WOODY, ALTERED PHLOEM DEVELOPMENT, Homeodomain-like superfamily protein (.1.2) Lus10001844 [exp] 262 / 7e-84 AT1G79430 286 / 3e-93 WOODY, ALTERED PHLOEM DEVELOPMENT, Homeodomain-like superfamily protein (.1.2) Lus10007132 [exp] 196 / 6e-60 AT4G13640 390 / 3e-137 unfertilized embryo sac 16, Homeodomain-like superfamily protein (.1.2) Lus10016676 [exp] 195 / 2e-59 AT4G13640 380 / 2e-133 unfertilized embryo sac 16, Homeodomain-like superfamily protein (.1.2) Lus10020264 [exp] 180 / 8e-53 AT3G04030 441 / 4e-154 Homeodomain-like superfamily protein (.1.2.3) Lus10002629 [exp] 179 / 1e-52 AT3G04030 440 / 9e-154 Homeodomain-like superfamily protein (.1.2.3) Lus10036758 [exp] 169 / 8e-50 AT1G69580 258 / 9e-85 Homeodomain-like superfamily protein (.1.2) Lus10037169 [exp] 167 / 3e-49 AT1G69580 252 / 9e-83 Homeodomain-like superfamily protein (.1.2) Lus10010404 [exp] 160 / 2e-46 AT5G45580 216 / 9e-70 Homeodomain-like superfamily protein (.1) Lus10012142 [exp] 157 / 1e-45 AT5G45580 215 / 2e-69 Homeodomain-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00249 [poplar] [flax] Myb_DNA-binding Myb-like DNA-binding domain CL0123 [poplar] [flax] PF14379 [poplar] [flax] Myb_CC_LHEQLE MYB-CC type transfactor, LHEQLE motif
Representative CDS sequence Show only first row Show all	>Potri.010G174100.1 pacid=42799762 polypeptide=Potri.010G174100.1.p locus=Potri.010G174100 ID=Potri.010G174100.1.v4.1 annot-version=v4.1 ATGTTCCATACCAAGAAACCCTCAACTATGAATTCCCATGATAGACCCATGTGTGTTCAAGGGGACTCTGGTCTTGTCCTCACCACAGACCCCAAGCCCC GTCTCCGCTGGACTGTTGAGCTCCATGAACGCTTTGTGGATGCCGTTACTCAGCTTGGAGGCCCAGATAAGGCCACTCCCAAAACCATCATGAGAGTCAT GGGTGTGAAGGGTCTTACCCTTTACCACCTCAAAAGCCATCTTCAGAAATTCAGACTTGGAAAGCAACCACACAAGGATTTCAATGATCATTCAATTAAG GATGCTTCGGCGTTAGATCTTCAACGAAGTGCAGCATCTTCATCTGGCATGATGAGCCGCAGTATGAATGAGATGCAAATGGAGGTGCAGAGAAGACTGC ATGAACAATTAGAGGTTCAAAGACACCTTCAATTAAGGACCGAGGCTCAAGGGAAATATATACAAAGTTTGTTGGAGAAAGCTTGCCAAACCCTAGCAGG TGATCAAAACTTGGCTTCTGGAAGCTATAAGGGAATGGGGAATCAAGGAATTCCTGGTATGGGTGCAATGAAAGAATTTGGCACGCTGAATTTTCCAGCA TTTCAAGACCTTAACATTTATGGGGGTGACCAACTTGACCTTCAACACAATATGGATAGGCCATCACTCGATGGTTTCATGCCGAACAACGACAACATTT GTTTGGGAAAGAAGAGGCCTAGTCCTTACGATGGTAGTGGAAAGAGCCCTTTGATTTGGCCGGACGATCTGCGTTTGCAGGATTTGGGATCAGGACCGGC ATGTCTTGAACCCCAAGATGATCCTTTCAAAGGTGATCAAATCCAGATGGCACCACCATCAATGGATAGGGGTACTGATCTGGATTCCATATCTGACATG TATGAAATAAAGCCAGCGCTTCAGGGTGATGCACTGGATGAGAAGAAATTTGAAGCATCAGCAAAGCTAAAAAGGCCATCCCCAAGAAGATCACCACTAG CAGCCGAAAGGATGAGCCCTATGATCAATACTGGCGCCATGCCACAAGGCAGAAACTCACCATTTGGTTGA
AA sequence Show only first row Show all	>Potri.010G174100.1 pacid=42799762 polypeptide=Potri.010G174100.1.p locus=Potri.010G174100 ID=Potri.010G174100.1.v4.1 annot-version=v4.1 MFHTKKPSTMNSHDRPMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKDFNDHSIK DASALDLQRSAASSSGMMSRSMNEMQMEVQRRLHEQLEVQRHLQLRTEAQGKYIQSLLEKACQTLAGDQNLASGSYKGMGNQGIPGMGAMKEFGTLNFPA FQDLNIYGGDQLDLQHNMDRPSLDGFMPNNDNICLGKKRPSPYDGSGKSPLIWPDDLRLQDLGSGPACLEPQDDPFKGDQIQMAPPSMDRGTDLDSISDM YEIKPALQGDALDEKKFEASAKLKRPSPRRSPLAAERMSPMINTGAMPQGRNSPFG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G79430	GARP	WDY, APL	WOODY, ALTERED PHLOEM DEVELOPM...		Potri.010G174100 [exp]	0	1
AT3G55370	DOF	OBP3, AtDof3. 6	OBF-binding protein 3 (.1.2.3)		Potri.008G055100 [exp]	1.00	0.9347
AT4G16790			hydroxyproline-rich glycoprote...		Potri.003G079900 [exp]	1.41	0.9319
AT2G03500	GARP		Homeodomain-like superfamily p...		Potri.018G074200 [exp]	2.00	0.9179
					Potri.004G226200 [exp]	2.44	0.9191
AT4G10790			UBX domain-containing protein ...		Potri.015G080200 [exp]	3.16	0.9150
AT2G39840		TOPP4	type one serine/threonine prot...		Potri.008G166300 [exp]	5.91	0.8994
AT1G76040		CPK29	calcium-dependent protein kina...		Potri.005G245000 [exp]	6.32	0.8991
AT5G04980			DNAse I-like superfamily prote...		Potri.008G011000 [exp]	6.70	0.8937
AT2G03500	GARP		Homeodomain-like superfamily p...		Potri.006G155200 [exp]	8.30	0.8645
					Potri.015G068800 [exp]	8.71	0.8431

Compare expression of checked genes

Potri.010G174100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.