Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G56200 511 / 2e-180 Transmembrane amino acid transporter family protein (.1) AT2G40420 494 / 1e-173 Transmembrane amino acid transporter family protein (.1) AT3G30390 392 / 4e-133 Transmembrane amino acid transporter family protein (.1.2) AT5G38820 373 / 5e-126 Transmembrane amino acid transporter family protein (.1) AT1G80510 281 / 1e-89 Transmembrane amino acid transporter family protein (.1) AT2G39130 58 / 9e-09 Transmembrane amino acid transporter family protein (.1) AT2G42005 52 / 6e-07 Transmembrane amino acid transporter family protein (.1) AT3G54830 50 / 3e-06 Transmembrane amino acid transporter family protein (.1) AT3G09330 42 / 0.0008 Transmembrane amino acid transporter family protein (.1) AT2G41190 42 / 0.0008 Transmembrane amino acid transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G106300 [exp] 385 / 2e-130 AT3G30390 625 / 0.0 Transmembrane amino acid transporter family protein (.1.2) Potri.002G114300 [exp] 381 / 3e-129 AT3G30390 516 / 0.0 Transmembrane amino acid transporter family protein (.1.2) Potri.004G111400 [exp] 368 / 9e-124 AT3G30390 643 / 0.0 Transmembrane amino acid transporter family protein (.1.2) Potri.001G204400 [exp] 280 / 4e-89 AT1G80510 560 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.003G011900 [exp] 278 / 3e-88 AT1G80510 611 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.010G136601 [exp] 179 / 1e-52 AT3G30390 315 / 4e-105 Transmembrane amino acid transporter family protein (.1.2) Potri.008G075500 [exp] 144 / 5e-41 AT3G56200 101 / 6e-26 Transmembrane amino acid transporter family protein (.1) Potri.005G102300 [exp] 55 / 5e-08 AT4G38250 539 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.008G036300 [exp] 50 / 3e-06 AT2G39130 691 / 0.0 Transmembrane amino acid transporter family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042864 [exp] 609 / 0 AT3G56200 534 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10028165 [exp] 598 / 0 AT3G56200 541 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10035140 [exp] 388 / 1e-131 AT3G30390 691 / 0.0 Transmembrane amino acid transporter family protein (.1.2) Lus10031964 [exp] 384 / 3e-130 AT3G30390 689 / 0.0 Transmembrane amino acid transporter family protein (.1.2) Lus10034353 [exp] 384 / 7e-130 AT3G30390 655 / 0.0 Transmembrane amino acid transporter family protein (.1.2) Lus10007716 [exp] 382 / 2e-129 AT3G30390 514 / 0.0 Transmembrane amino acid transporter family protein (.1.2) Lus10005099 [exp] 380 / 1e-128 AT3G30390 646 / 0.0 Transmembrane amino acid transporter family protein (.1.2) Lus10018652 [exp] 373 / 2e-125 AT5G38820 499 / 3e-175 Transmembrane amino acid transporter family protein (.1) Lus10036845 [exp] 356 / 2e-119 AT3G30390 561 / 0.0 Transmembrane amino acid transporter family protein (.1.2) Lus10034093 [exp] 298 / 4e-96 AT1G80510 658 / 0.0 Transmembrane amino acid transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [poplar] [flax] APC PF03222 [poplar] [flax] Trp_Tyr_perm Tryptophan/tyrosine permease family
Representative CDS sequence Show only first row Show all	>Potri.010G181800.2 pacid=42798925 polypeptide=Potri.010G181800.2.p locus=Potri.010G181800 ID=Potri.010G181800.2.v4.1 annot-version=v4.1 ATGAACAACAAGACAACTTATTCAAAAAGCATCCTTCTAGCCGGTAAATTCCCTCCCGGAATGTCGCCTGCCACTGGAATACGTGCTCCGCTTCTGCCGG AAAGGAAGGAGGGGGAGAAGCGTGCATCGGTACACGGAGCAGTGTTCAACGTGTCAACTAGTATAATAGGTGCAGGAATTATGTCAATACCTGCCACACT TAAGGTGCTAGGTGTAATACCTGCTTTAGTGTTGATTATGATTATTGCATGGCTTGTGGATATTTCTGTGGAGTTCTTGTTGAGGTATACGCTCTCTGGG GAGTCAACAACGTATGCTGGTGTCATGAGGGAGGCTTTTGGGAGGGTAGGATCCGTGACTGTACAAATATGTGTCATGATAACTAATCTTGGGTGCTTGA TCGTTTATTTGATTATCATTGGGGATGTACTGTCAGGGAATGTGCATGATGGATCAATGCACTTGGGCGTGTTGCAAGAATGGTTTGGAATTCACTGGTG GAATTCCCGTGCTTTTGCGCTCCTCTTCGTTGTTATCTTTGTTGTGCTTCCTCTGGTTTTGTTCAGGCGTGTAGAATCATTGAGGTTCAGTTCAGCTATA TCAGTCCTCCTCGCAGTAGTGTTTGTTGGCATATGTTCAGTGATGGCAATCTATGCACTCATTGAAGGGAAAACCAAAAGTCCGAGATTGCTGCCCCATC TAGATAACAAAACTTCCTTCTTCGACCTTTTCACTGCAGCTCCCGTGATTGTGACAGCCTTCACATTTCATTTTAATGTTCATCCAATAAGTTTCGAGCT CGGGAAACCTTCTGATATGGTTTCAGCAGTCAAGATTTCCCTCTTGCTTTGTGCTGGCATCTACTTCACCATAGGCATTTCTGGGTATCTTTTGTTTGGG GAATCAATCGTGGCCGACATACTTGTAAATTTTGACCAGAGTTCTGATACAACAATCGGTGCATTACTCAATGACACTGTCAGACTTAGTTATGCCTTTC ACCTCATGCTGGCGTTTCCCCTCTTGAACTTCTCATTGAGGGCAAACATTGATGAACTTCTTTTCCCTAAGAAGCCTCTTTTAGCGACAGATTCCATCAG ATTTGTGTCCCTCACTCTTGCACTACTAGTTTTCGCTTACCTGGCAGCGATTGCAATCCCAAATATATGGTACTTGTTTCAGTTCATGGGATCAACCTCA GCAGTGTGTCTCGCCTTCATCTTCCCAGGTGCTATTGTGTTAAGGGATGTTCACAGCATATCAACGACACGAGATAAGATCGTGGCAGCAGTGATGATAA TTCTAGCTGTAGCAACAAGCACAATTGCCTTGTCAACAAACATCTATAGTTTGGTTAGAAACAAGTAA
AA sequence Show only first row Show all	>Potri.010G181800.2 pacid=42798925 polypeptide=Potri.010G181800.2.p locus=Potri.010G181800 ID=Potri.010G181800.2.v4.1 annot-version=v4.1 MNNKTTYSKSILLAGKFPPGMSPATGIRAPLLPERKEGEKRASVHGAVFNVSTSIIGAGIMSIPATLKVLGVIPALVLIMIIAWLVDISVEFLLRYTLSG ESTTYAGVMREAFGRVGSVTVQICVMITNLGCLIVYLIIIGDVLSGNVHDGSMHLGVLQEWFGIHWWNSRAFALLFVVIFVVLPLVLFRRVESLRFSSAI SVLLAVVFVGICSVMAIYALIEGKTKSPRLLPHLDNKTSFFDLFTAAPVIVTAFTFHFNVHPISFELGKPSDMVSAVKISLLLCAGIYFTIGISGYLLFG ESIVADILVNFDQSSDTTIGALLNDTVRLSYAFHLMLAFPLLNFSLRANIDELLFPKKPLLATDSIRFVSLTLALLVFAYLAAIAIPNIWYLFQFMGSTS AVCLAFIFPGAIVLRDVHSISTTRDKIVAAVMIILAVATSTIALSTNIYSLVRNK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G56200			Transmembrane amino acid trans...		Potri.010G181800 [exp]	0	1
AT3G19440			Pseudouridine synthase family ...		Potri.009G095700 [exp]	1.41	0.8525
AT1G22370		ATUGT85A5	UDP-glucosyl transferase 85A5 ...		Potri.006G023700 [exp]	4.24	0.8553
AT1G60010			unknown protein		Potri.010G095400 [exp]	7.14	0.8442
AT2G30580		BMI1A, DRIP2	DREB2A-interacting protein 2 (...		Potri.013G042000 [exp]	7.74	0.7632
AT1G75430	HD	BLH11	BEL1-like homeodomain 11 (.1)		Potri.002G030900 [exp]	7.93	0.8012
					Potri.006G037900 [exp]	8.77	0.8045
AT2G46370		FIN219, JAR1	JASMONATE RESISTANT 1, FAR-RED...		Potri.014G095500 [exp]	9.21	0.7841
AT1G09530	bHLH	PIF3, POC1, PAP...	PHOTOCURRENT 1, PHYTOCHROME-AS...		Potri.005G001800 [exp]	12.00	0.7583	Pt-PIF3.2
AT1G27660	bHLH	bHLH110	basic helix-loop-helix (bHLH) ...		Potri.010G208600 [exp]	12.48	0.8130
AT5G53980	HD	ATHB52	homeobox protein 52 (.1)		Potri.011G114500 [exp]	18.43	0.8062

Compare expression of checked genes

Potri.010G181800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.