Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-ABI4.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40220 103 / 2e-24 AP2_ERF ATABI4, GIN6, SUN6, SIS5, SAN5, ISI3, ABI4 SUCROSE UNCOUPLED 6, SUGAR-INSENSITIVE 5, SALOBRENO 5, IMPAIRED SUCROSE INDUCTION 3, GLUCOSE INSENSITIVE 6, ABA INSENSITIVE 4, Integrase-type DNA-binding superfamily protein (.1) AT3G57600 79 / 3e-16 AP2_ERF DREB2F Integrase-type DNA-binding superfamily protein (.1) AT1G75490 76 / 6e-16 AP2_ERF DREB2D Integrase-type DNA-binding superfamily protein (.1) AT5G18450 75 / 9e-15 AP2_ERF DREB2G Integrase-type DNA-binding superfamily protein (.1) AT2G40340 74 / 3e-14 AP2_ERF AtERF48, DREB2C Integrase-type DNA-binding superfamily protein (.1) AT2G40350 68 / 2e-13 AP2_ERF DREB2H Integrase-type DNA-binding superfamily protein (.1) AT4G13620 66 / 9e-12 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT3G11020 66 / 1e-11 AP2_ERF DREB2B DEHYDRATION-RESPONSIVE ELEMENT BINDING PROTEIN 2, DRE/CRT-binding protein 2B (.1) AT3G16280 62 / 6e-11 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT2G44940 62 / 1e-10 AP2_ERF Integrase-type DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G071100 [exp] 292 / 1e-96 AT2G40220 135 / 7e-37 SUCROSE UNCOUPLED 6, SUGAR-INSENSITIVE 5, SALOBRENO 5, IMPAIRED SUCROSE INDUCTION 3, GLUCOSE INSENSITIVE 6, ABA INSENSITIVE 4, Integrase-type DNA-binding superfamily protein (.1) Potri.016G053200 [exp] 81 / 5e-17 AT3G57600 256 / 5e-85 Integrase-type DNA-binding superfamily protein (.1) Potri.006G054500 [exp] 79 / 2e-16 AT3G57600 234 / 1e-76 Integrase-type DNA-binding superfamily protein (.1) Potri.002G029400 [exp] 72 / 5e-14 AT1G75490 163 / 3e-50 Integrase-type DNA-binding superfamily protein (.1) Potri.005G233300 [exp] 71 / 1e-13 AT1G75490 161 / 2e-49 Integrase-type DNA-binding superfamily protein (.1) Potri.008G073600 [exp] 63 / 5e-11 AT2G40340 129 / 7e-35 Integrase-type DNA-binding superfamily protein (.1) Potri.017G055400 [exp] 64 / 6e-11 AT4G13620 216 / 9e-66 Integrase-type DNA-binding superfamily protein (.1) Potri.005G168700 [exp] 63 / 1e-10 AT1G78080 197 / 3e-60 wound induced dedifferentiation 1, related to AP2 4 (.1) Potri.002G141200 [exp] 62 / 1e-10 AT2G44940 158 / 6e-47 Integrase-type DNA-binding superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009834 [exp] 95 / 2e-21 AT2G40220 137 / 1e-37 SUCROSE UNCOUPLED 6, SUGAR-INSENSITIVE 5, SALOBRENO 5, IMPAIRED SUCROSE INDUCTION 3, GLUCOSE INSENSITIVE 6, ABA INSENSITIVE 4, Integrase-type DNA-binding superfamily protein (.1) Lus10040944 [exp] 93 / 1e-20 AT2G40220 142 / 2e-39 SUCROSE UNCOUPLED 6, SUGAR-INSENSITIVE 5, SALOBRENO 5, IMPAIRED SUCROSE INDUCTION 3, GLUCOSE INSENSITIVE 6, ABA INSENSITIVE 4, Integrase-type DNA-binding superfamily protein (.1) Lus10011319 [exp] 78 / 6e-16 AT3G57600 207 / 5e-66 Integrase-type DNA-binding superfamily protein (.1) Lus10012210 [exp] 78 / 6e-16 AT3G57600 207 / 4e-66 Integrase-type DNA-binding superfamily protein (.1) Lus10010632 [exp] 71 / 5e-14 AT1G75490 174 / 6e-55 Integrase-type DNA-binding superfamily protein (.1) Lus10006127 [exp] 69 / 5e-13 AT1G75490 155 / 8e-47 Integrase-type DNA-binding superfamily protein (.1) Lus10003581 [exp] 67 / 5e-13 AT2G40340 139 / 6e-42 Integrase-type DNA-binding superfamily protein (.1) Lus10024298 [exp] 69 / 7e-13 AT1G75490 159 / 1e-48 Integrase-type DNA-binding superfamily protein (.1) Lus10012226 [exp] 69 / 1e-12 AT2G40340 137 / 2e-37 Integrase-type DNA-binding superfamily protein (.1) Lus10002855 [exp] 67 / 7e-12 AT2G40340 132 / 2e-37 Integrase-type DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [poplar] [flax] MBD-like PF00847 [poplar] [flax] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Potri.010G186400.1 pacid=42798556 polypeptide=Potri.010G186400.1.p locus=Potri.010G186400 ID=Potri.010G186400.1.v4.1 annot-version=v4.1 ATGCGCACCAGTGCTGCCTGTTTACTCCAGTATGAAGCAGCAACTTTCTCTCTCTCCGAATACAAAAATATAAATACATGCAGTCATTGTAGATCACCGC CCTCATCCGCCATTTACACACATGACATTCAAACCAGCGCACAGGCAAAGGCTACTCTATACTTCGACAGATCAATAACCAAAGAACGAGGCCCCCTCAG TCTTAATAAAGCCTTAAAAGCGATTCACTTTATAATGGACAATTCATCTCTCTCTCACCCTCCCCAAGAACCCACCACCACCACCACCAAATTATCATCC AATGAAAAAAGCACCGATAACAATACCACCGCAACCACCCCCACTACCGCCACAACAAGTGACACAAACAGTAACAACAACAGCAGTGGCAATAGCAGGA AGTGCAAGGGCAAAGGAGGACCAGACAACGGTAAATTTAGATACAGAGGAGTTAGGCAAAGAAGCTGGGGCAAATGGGTAGCAGAGATCCGTGAGCCAAG AAAACGAACCCGTAAGTGGCTTGGAACTTTCGCCACCGCAGAGGACGCAGCACGAGCCTATGATCGAGCAGCCTTCATCCTTTATGGCTCCAGGGCTCAT CTCAATTTGCAACCCTCAGGTTCCTCTTCCTCTGCTCAGTCCGGATCAACTTCTCGCAACTCTACCTCTTCCTCGAGCCAGACTCTTCGTCCTTTGCTCC CTCGTCCCCCTGGGTTTGGTTGTGGCTTTGGTTTCACTTTCTCTCTCTCAAATCCAATGGCTTCTCCGTCTGTCACGGCAGCTTCATCGGGATTTACTCC ATACGGGGTTAATTGTTATTCGAATAATGTTGTTGGGTCGGCCTTACAATGTTCTAGTACTAATGAAATGCCAGGGCAAAATCACCAGCAAGTTATGTTA CAAGGCTATCTCATTCAACATGGGGCTAATACAACCAACCCCAATAATATATTTGTTAGTTCTAGTGTAGATCCATCAACAACAACCTCGTATCAAAATC ATTGTCATCGTCTGCCGCAGCATCATGCGTACGATGATGTTAATGCGTTGGGGGGTTCCGTCGGGTCGAGTTTCTCTCTGTCTGGCAGCAATACTCCTCC TGTTGTTGCACCAGCGGGTCATCTTCTGCAGGATCCGGTAATGCATATTGGACCTGGATCTCCATCTGCGTGGAATGATGAGGAGTACCCACCGCCTAGT ATTTGGGACGATGAGGACCCTTTCTTGTTTGATTTTTGA
AA sequence Show only first row Show all	>Potri.010G186400.1 pacid=42798556 polypeptide=Potri.010G186400.1.p locus=Potri.010G186400 ID=Potri.010G186400.1.v4.1 annot-version=v4.1 MRTSAACLLQYEAATFSLSEYKNINTCSHCRSPPSSAIYTHDIQTSAQAKATLYFDRSITKERGPLSLNKALKAIHFIMDNSSLSHPPQEPTTTTTKLSS NEKSTDNNTTATTPTTATTSDTNSNNNSSGNSRKCKGKGGPDNGKFRYRGVRQRSWGKWVAEIREPRKRTRKWLGTFATAEDAARAYDRAAFILYGSRAH LNLQPSGSSSSAQSGSTSRNSTSSSSQTLRPLLPRPPGFGCGFGFTFSLSNPMASPSVTAASSGFTPYGVNCYSNNVVGSALQCSSTNEMPGQNHQQVML QGYLIQHGANTTNPNNIFVSSSVDPSTTTSYQNHCHRLPQHHAYDDVNALGGSVGSSFSLSGSNTPPVVAPAGHLLQDPVMHIGPGSPSAWNDEEYPPPS IWDDEDPFLFDF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G40220	AP2_ERF	ATABI4, GIN6, S...	SUCROSE UNCOUPLED 6, SUGAR-INS...		Potri.010G186400 [exp]	0	1	Pt-ABI4.2
AT5G26330			Cupredoxin superfamily protein...		Potri.002G052500 [exp]	3.46	0.6565
AT5G22250		AtCAF1b	CCR4- associated factor 1b, Po...		Potri.003G186300 [exp]	62.38	0.5661
AT5G15110			Pectate lyase family protein (...		Potri.008G148800 [exp]	63.00	0.6066

Compare expression of checked genes

Potri.010G186400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.