Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	PtrAUX3,Pt-LAX1.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38120 734 / 0 MAP1, WAV5, PIR1, AUX1 WAVY ROOTS 5, MODIFIER OF ARF7/NPH4 PHENOTYPES 1, AUXIN RESISTANT 1, Transmembrane amino acid transporter family protein (.1) AT5G01240 724 / 0 LAX1 like AUXIN RESISTANT 1 (.1.2) AT2G21050 676 / 0 LAX2 like AUXIN RESISTANT 2 (.1) AT1G77690 675 / 0 LAX3 like AUX1 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G066400 [exp] 811 / 0 AT2G38120 746 / 0.0 WAVY ROOTS 5, MODIFIER OF ARF7/NPH4 PHENOTYPES 1, AUXIN RESISTANT 1, Transmembrane amino acid transporter family protein (.1) Potri.016G113600 [exp] 752 / 0 AT2G38120 796 / 0.0 WAVY ROOTS 5, MODIFIER OF ARF7/NPH4 PHENOTYPES 1, AUXIN RESISTANT 1, Transmembrane amino acid transporter family protein (.1) Potri.006G098300 [exp] 741 / 0 AT2G38120 795 / 0.0 WAVY ROOTS 5, MODIFIER OF ARF7/NPH4 PHENOTYPES 1, AUXIN RESISTANT 1, Transmembrane amino acid transporter family protein (.1) Potri.009G132100 [exp] 683 / 0 AT2G21050 832 / 0.0 like AUXIN RESISTANT 2 (.1) Potri.002G087000 [exp] 680 / 0 AT1G77690 745 / 0.0 like AUX1 3 (.1) Potri.004G172800 [exp] 675 / 0 AT2G21050 829 / 0.0 like AUXIN RESISTANT 2 (.1) Potri.005G174000 [exp] 675 / 0 AT1G77690 776 / 0.0 like AUX1 3 (.1) Potri.003G138100 [exp] 54 / 2e-07 AT5G41800 729 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.009G149900 [exp] 51 / 1e-06 AT1G08230 573 / 0.0 L-GAMMA-AMINOBUTYRIC ACID TRANSPORTER 1, Transmembrane amino acid transporter family protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028278 [exp] 753 / 0 AT2G38120 801 / 0.0 WAVY ROOTS 5, MODIFIER OF ARF7/NPH4 PHENOTYPES 1, AUXIN RESISTANT 1, Transmembrane amino acid transporter family protein (.1) Lus10040212 [exp] 748 / 0 AT2G38120 798 / 0.0 WAVY ROOTS 5, MODIFIER OF ARF7/NPH4 PHENOTYPES 1, AUXIN RESISTANT 1, Transmembrane amino acid transporter family protein (.1) Lus10004831 [exp] 743 / 0 AT2G38120 853 / 0.0 WAVY ROOTS 5, MODIFIER OF ARF7/NPH4 PHENOTYPES 1, AUXIN RESISTANT 1, Transmembrane amino acid transporter family protein (.1) Lus10002498 [exp] 734 / 0 AT2G38120 842 / 0.0 WAVY ROOTS 5, MODIFIER OF ARF7/NPH4 PHENOTYPES 1, AUXIN RESISTANT 1, Transmembrane amino acid transporter family protein (.1) Lus10025057 [exp] 688 / 0 AT2G21050 866 / 0.0 like AUXIN RESISTANT 2 (.1) Lus10034488 [exp] 686 / 0 AT2G21050 864 / 0.0 like AUXIN RESISTANT 2 (.1) Lus10028078 [exp] 667 / 0 AT1G77690 810 / 0.0 like AUX1 3 (.1) Lus10025628 [exp] 667 / 0 AT1G77690 808 / 0.0 like AUX1 3 (.1) Lus10003903 [exp] 45 / 0.0001 AT5G41800 695 / 0.0 Transmembrane amino acid transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [poplar] [flax] APC PF01490 [poplar] [flax] Aa_trans Transmembrane amino acid transporter protein
Representative CDS sequence Show only first row Show all	>Potri.010G191000.1 pacid=42799422 polypeptide=Potri.010G191000.1.p locus=Potri.010G191000 ID=Potri.010G191000.1.v4.1 annot-version=v4.1 ATGTCCAATCAGAAACAAGGAGAGGAAGCTATGGTCTCTACCTTCAATGACACTGAGCATGAAGAGAAAGAGGAAGTAAGCAAGGATGAATCCGGTTTTA GGCTTAAAAGCATTCTTTGGCATGGAGGGTCAGTGTATGATGCCTGGTTTAGCTGTGCTTCAAATCAGGTTGCTCAGGTTCTGTTAACACTGCCATACTC TTTCTCTCAAATGGGGATGCTTTCAGGCATAATTTTGCAGATATTTTATGGTTTTCTTGGAAGTTGGACTGCTTACCTTATCAGTGTTCTCTATGTTGAA TACCGAAGCAGAAAGGAGAAAGAGAATGTCAACTTCAAGAACCATGTTATACAGTGGTTTGAAGTGCTAGATGGATTACTGGGTCCAACTTGGAAAGCTG TTGGGTTGGCCTTTAACTGCACTTTTCTCCTGTTTGGTTCTGTCATACAGCTTATAGCCTGTGCAAGCAATATCTACTACATAGATGACAAATTTGACAA GCGGACATGGACTTATATTTTTGGAGCTTGCTGTGCCACCACAGTGTTCATTCCTTCGTTTCACAACTACAGAATTTGGTCATTTCTTGGGCTTGGAATG ACTACCTACACAGCTTGGTATATGACTATTGCATCTCTTGTTCACGGCCAGGTTGATGGGGTAACTCACTCGGGCCCAGCAAAGGCTGTTCTATATTTTA CAGGAGCCACCAATATCCTCTACACTTTTGGTGGGCATGCTGTCACTGTGGAAATTATGCACGCCATGTGGAAGCCTCAAAGGTTCAAGTACATTTATCT ACTCGCTACCCTTTATGTGTTCACTTTAACACTTCCATCTGCTGCTGCGACCTACTGGGCCTTTGGAGATCAACTCCTCACTCATTCAAATGCTTTCTCC CTGCTACCCCGCACCGGATGGCGTGATGCTGCTGTTATCCTCATGCTTATCCATCAGTTTATAACATTCGGATTCGCTTGTACACCGTTGTATTTTGTGT GGGAGAAAGTGATCGGTATGCATGATACAAAGAGCATATTGTTGAGGGCATTATGCCGGTTACCTGTGGTCATACCTATATGGTTCTTCGCAATTATATT TCCTTTCTTTGGACCAATTAACTCAGCTGTGGGGGCTCTTTTGGTCACCTTCACCGTCTACATCATCCCTGCTTTAGCTCATATGCTCACTTACCGATCT GCCTCAGCTCGACAGAATGCAGTTGAGAAACCTCCTGTCTTCCTCCCAAGCTGGACAGCCATGTACGTATTGAATGCATTTATAGTGGTATGGGTACTTG TGGTTGGCTTTGGATTGGGAGGGTGGGCTAGTATGTCCAATTTCATCAAGCAAGTTGACACATTTGGTCTTTTCGCCAAGTGCTACCAGTGTCCACCCTC GGCTGCTGCAAAACATCATTAA
AA sequence Show only first row Show all	>Potri.010G191000.1 pacid=42799422 polypeptide=Potri.010G191000.1.p locus=Potri.010G191000 ID=Potri.010G191000.1.v4.1 annot-version=v4.1 MSNQKQGEEAMVSTFNDTEHEEKEEVSKDESGFRLKSILWHGGSVYDAWFSCASNQVAQVLLTLPYSFSQMGMLSGIILQIFYGFLGSWTAYLISVLYVE YRSRKEKENVNFKNHVIQWFEVLDGLLGPTWKAVGLAFNCTFLLFGSVIQLIACASNIYYIDDKFDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLGM TTYTAWYMTIASLVHGQVDGVTHSGPAKAVLYFTGATNILYTFGGHAVTVEIMHAMWKPQRFKYIYLLATLYVFTLTLPSAAATYWAFGDQLLTHSNAFS LLPRTGWRDAAVILMLIHQFITFGFACTPLYFVWEKVIGMHDTKSILLRALCRLPVVIPIWFFAIIFPFFGPINSAVGALLVTFTVYIIPALAHMLTYRS ASARQNAVEKPPVFLPSWTAMYVLNAFIVVWVLVVGFGLGGWASMSNFIKQVDTFGLFAKCYQCPPSAAAKHH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G38120		MAP1, WAV5, PIR...	WAVY ROOTS 5, MODIFIER OF ARF7...		Potri.010G191000 [exp]	0	1	PtrAUX3,Pt-LAX1.2
AT1G25580	NAC	ANAC008, SOG1	SUPPRESSOR OF GAMMA RADIATION ...		Potri.010G129700 [exp]	3.00	0.7361
AT4G27190			NB-ARC domain-containing disea...		Potri.001G445150 [exp]	15.58	0.7390
AT4G27190			NB-ARC domain-containing disea...		Potri.001G445700 [exp]	16.91	0.7364
AT3G21620			ERD (early-responsive to dehyd...		Potri.014G156100 [exp]	24.39	0.6456
AT4G27190			NB-ARC domain-containing disea...		Potri.001G443700 [exp]	27.01	0.7077
AT4G33280	B3	REM16	AP2/B3-like transcriptional fa...		Potri.002G129800 [exp]	33.24	0.6946
AT1G23890			NHL domain-containing protein ...		Potri.017G129500 [exp]	36.00	0.7111
AT1G25580	NAC	ANAC008, SOG1	SUPPRESSOR OF GAMMA RADIATION ...		Potri.008G116600 [exp]	42.24	0.6839
AT1G74520		ATHVA22A	HVA22 homologue A (.1)		Potri.001G283000 [exp]	42.72	0.6803
AT3G30380			alpha/beta-Hydrolases superfam...		Potri.008G112600 [exp]	50.47	0.6794

Compare expression of checked genes

Potri.010G191000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.