Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38090 257 / 4e-85 MYB MYB-R Duplicated homeodomain-like superfamily protein (.1) AT5G05790 251 / 4e-83 MYB Duplicated homeodomain-like superfamily protein (.1) AT3G11280 251 / 5e-83 MYB Duplicated homeodomain-like superfamily protein (.1.2) AT5G58900 233 / 5e-76 MYB Homeodomain-like transcriptional regulator (.1) AT5G01200 206 / 1e-65 MYB Duplicated homeodomain-like superfamily protein (.1) AT5G08520 179 / 2e-54 MYB Duplicated homeodomain-like superfamily protein (.1) AT1G49010 164 / 8e-49 MYB Duplicated homeodomain-like superfamily protein (.1) AT5G04760 158 / 2e-47 MYB Duplicated homeodomain-like superfamily protein (.1) AT5G23650 140 / 3e-39 MYB Homeodomain-like transcriptional regulator (.1) AT3G10580 124 / 9e-34 MYB Homeodomain-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G064200 [exp] 474 / 9e-171 AT5G05790 267 / 3e-89 Duplicated homeodomain-like superfamily protein (.1) Potri.001G248800 [exp] 323 / 6e-111 AT5G58900 312 / 1e-106 Homeodomain-like transcriptional regulator (.1) Potri.009G042600 [exp] 311 / 5e-106 AT5G58900 307 / 1e-104 Homeodomain-like transcriptional regulator (.1) Potri.006G097300 [exp] 304 / 3e-103 AT2G38090 355 / 2e-123 Duplicated homeodomain-like superfamily protein (.1) Potri.016G112300 [exp] 303 / 5e-103 AT2G38090 358 / 9e-125 Duplicated homeodomain-like superfamily protein (.1) Potri.007G076200 [exp] 179 / 2e-54 AT5G08520 293 / 6e-99 Duplicated homeodomain-like superfamily protein (.1) Potri.005G087700 [exp] 177 / 8e-54 AT5G08520 304 / 2e-103 Duplicated homeodomain-like superfamily protein (.1) Potri.012G060300 [exp] 170 / 4e-51 AT1G49010 217 / 3e-69 Duplicated homeodomain-like superfamily protein (.1) Potri.001G219100 [exp] 164 / 8e-50 AT5G04760 217 / 2e-71 Duplicated homeodomain-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014837 [exp] 270 / 1e-90 AT3G11280 242 / 7e-80 Duplicated homeodomain-like superfamily protein (.1.2) Lus10009884 [exp] 268 / 2e-89 AT3G11280 246 / 4e-81 Duplicated homeodomain-like superfamily protein (.1.2) Lus10040696 [exp] 257 / 8e-85 AT5G58900 306 / 2e-104 Homeodomain-like transcriptional regulator (.1) Lus10018209 [exp] 256 / 1e-84 AT5G58900 302 / 9e-103 Homeodomain-like transcriptional regulator (.1) Lus10028264 [exp] 248 / 5e-82 AT3G11280 221 / 1e-71 Duplicated homeodomain-like superfamily protein (.1.2) Lus10035518 [exp] 241 / 7e-79 AT2G38090 304 / 1e-103 Duplicated homeodomain-like superfamily protein (.1) Lus10027781 [exp] 179 / 5e-55 AT2G38090 208 / 2e-66 Duplicated homeodomain-like superfamily protein (.1) Lus10041001 [exp] 167 / 6e-50 AT5G08520 354 / 4e-123 Duplicated homeodomain-like superfamily protein (.1) Lus10013447 [exp] 166 / 1e-49 AT5G08520 350 / 2e-121 Duplicated homeodomain-like superfamily protein (.1) Lus10036413 [exp] 158 / 2e-47 AT5G04760 234 / 3e-78 Duplicated homeodomain-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00249 [poplar] [flax] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.010G193000.1 pacid=42797231 polypeptide=Potri.010G193000.1.p locus=Potri.010G193000 ID=Potri.010G193000.1.v4.1 annot-version=v4.1 ATGGAAACTCTGAATCCATCTTGGTACATGTCGAATTCGAATTGGTTTACCCAAACCACAGAGTGGACTAGAGAGGAGAACAAGGAGTTTGAGATAGCTT TGGCGATATTTGATGAGCATGAGCCTGATAGGTGGCTAAAGGTGGCAGCTATGATACCTGGAAAGACAGTTTATGATGTGATCAAGCAATACAAGGAGCT GGAAGAGGATGTTAGTGATATAGAAGCAGGGAGGGTTCCGGTTCCGGGTTACCTTAGCTCGTCTTTCACTTTCCAGTTGGTTGGCAATAGCAATTTTGAT GCGTATAGGAAGAGGTCTTTGACTGCCAAGAGTGCTGATCAGCAGAGAAAGAAAGGTGTGCCATGGACAGAAGATGAGCACAGGCGGTTCCTTATGGGGC TTCTAAAGCATGGAAAAGGGGACTGGAGGAACATCTCTCGCAATTTTGTAGTTTCCAAGACTCCAACTCAAGTGGCGAGCCATGCACAGAAGTATTTCAT ACGGCAGCAGCTTTCCGGAGTGAAGGATAAGAGAAGACCTAGCATCCATGACATTACAACTGTCAATCTCGCAGATGCTACTACTCCGTCAGATGGTGAC GAACCTTCCTCGCTAGATCAATCTGATTTGCTTTTATCGCAGCAAAAGCCAGCAGGGATGCAGAAAGTGTTGATTGACTGGGACGAAGCAAAGGATGGAT CGATTATGGTCTTTGATTCAACTCATGAAGACTTGTTTAAGTCATCTCCATATGAGATACCTTCGAACGGTCTAAAATTTCAGGGGCAAAATCTGTGTGT CGGTGCTCATCATGGGGCTCGTATCAACCCCCATAACATGGTTTTTAAATTGCCACCCCCAAGATTTCAAATTCAATATTAG
AA sequence Show only first row Show all	>Potri.010G193000.1 pacid=42797231 polypeptide=Potri.010G193000.1.p locus=Potri.010G193000 ID=Potri.010G193000.1.v4.1 annot-version=v4.1 METLNPSWYMSNSNWFTQTTEWTREENKEFEIALAIFDEHEPDRWLKVAAMIPGKTVYDVIKQYKELEEDVSDIEAGRVPVPGYLSSSFTFQLVGNSNFD AYRKRSLTAKSADQQRKKGVPWTEDEHRRFLMGLLKHGKGDWRNISRNFVVSKTPTQVASHAQKYFIRQQLSGVKDKRRPSIHDITTVNLADATTPSDGD EPSSLDQSDLLLSQQKPAGMQKVLIDWDEAKDGSIMVFDSTHEDLFKSSPYEIPSNGLKFQGQNLCVGAHHGARINPHNMVFKLPPPRFQIQY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G38090	MYB	MYB-R	Duplicated homeodomain-like su...		Potri.010G193000 [exp]	0	1
AT5G57580			Calmodulin-binding protein (.1...		Potri.011G043200 [exp]	5.83	0.8281	CBP60.11
AT2G33770		ATUBC24, UBC24,...	UBIQUITIN-CONJUGATING ENZYME 2...		Potri.011G052600 [exp]	8.24	0.8247
AT5G26600			Pyridoxal phosphate (PLP)-depe...		Potri.013G002400 [exp]	8.30	0.8227
AT2G22430	HD	ATHB6	homeobox protein 6 (.1)		Potri.005G071900 [exp]	14.69	0.8129
AT5G08139			RING/U-box superfamily protein...		Potri.015G047900 [exp]	15.16	0.8055
AT5G13660			unknown protein		Potri.008G051300 [exp]	15.96	0.7786
AT3G22440			FRIGIDA-like protein (.1)		Potri.008G153000 [exp]	17.02	0.7486
AT4G08320		TPR8	tetratricopeptide repeat 8, Te...		Potri.005G177400 [exp]	17.66	0.7856
AT1G68810	bHLH	bHLH030	basic helix-loop-helix (bHLH) ...		Potri.008G116000 [exp]	20.19	0.7811
AT4G29190	C3HZnF	AtOZF2	Arabidopsis thaliana oxidation...		Potri.006G234300 [exp]	20.39	0.7782

Compare expression of checked genes

Potri.010G193000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.