Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	PtrProT2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39890 702 / 0 ATPROT1, ProT1 proline transporter 1 (.1.2) AT3G55740 683 / 0 ATPROT2, ProT2 proline transporter 2 (.1.2) AT2G36590 655 / 0 ATPROT3, ProT3 proline transporter 3 (.1) AT1G08230 165 / 6e-46 ATGAT1 L-GAMMA-AMINOBUTYRIC ACID TRANSPORTER 1, Transmembrane amino acid transporter family protein (.2) AT5G41800 141 / 4e-37 Transmembrane amino acid transporter family protein (.1) AT1G48640 119 / 3e-29 Transmembrane amino acid transporter family protein (.1) AT1G24400 119 / 3e-29 ATLHT2, AATL2, LHT2 ARABIDOPSIS LYSINE HISTIDINE TRANSPORTER 2, AMINO ACID TRANSPORTER-LIKE PROTEIN 2, lysine histidine transporter 2 (.1) AT5G40780 117 / 2e-28 LHT1, LTH1 lysine histidine transporter 1 (.1.2) AT1G67640 112 / 4e-27 Transmembrane amino acid transporter family protein (.1) AT5G63850 98 / 6e-22 AAP4 amino acid permease 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G062900 [exp] 802 / 0 AT2G39890 687 / 0.0 proline transporter 1 (.1.2) Potri.005G219300 [exp] 180 / 1e-51 AT1G08230 226 / 7e-69 L-GAMMA-AMINOBUTYRIC ACID TRANSPORTER 1, Transmembrane amino acid transporter family protein (.2) Potri.008G026700 [exp] 173 / 5e-49 AT1G08230 490 / 7e-172 L-GAMMA-AMINOBUTYRIC ACID TRANSPORTER 1, Transmembrane amino acid transporter family protein (.2) Potri.008G026600 [exp] 168 / 4e-47 AT1G08230 509 / 2e-179 L-GAMMA-AMINOBUTYRIC ACID TRANSPORTER 1, Transmembrane amino acid transporter family protein (.2) Potri.009G149900 [exp] 162 / 5e-45 AT1G08230 573 / 0.0 L-GAMMA-AMINOBUTYRIC ACID TRANSPORTER 1, Transmembrane amino acid transporter family protein (.2) Potri.003G138100 [exp] 152 / 3e-41 AT5G41800 729 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.001G093600 [exp] 147 / 1e-39 AT5G41800 729 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.008G179000 [exp] 122 / 2e-30 AT1G24400 654 / 0.0 ARABIDOPSIS LYSINE HISTIDINE TRANSPORTER 2, AMINO ACID TRANSPORTER-LIKE PROTEIN 2, lysine histidine transporter 2 (.1) Potri.010G055800 [exp] 120 / 7e-30 AT5G40780 670 / 0.0 lysine histidine transporter 1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009877 [exp] 723 / 0 AT2G39890 700 / 0.0 proline transporter 1 (.1.2) Lus10040238 [exp] 686 / 0 AT3G55740 673 / 0.0 proline transporter 2 (.1.2) Lus10028251 [exp] 682 / 0 AT3G55740 676 / 0.0 proline transporter 2 (.1.2) Lus10038639 [exp] 165 / 6e-46 AT1G08230 523 / 0.0 L-GAMMA-AMINOBUTYRIC ACID TRANSPORTER 1, Transmembrane amino acid transporter family protein (.2) Lus10009386 [exp] 137 / 2e-35 AT1G08230 453 / 4e-157 L-GAMMA-AMINOBUTYRIC ACID TRANSPORTER 1, Transmembrane amino acid transporter family protein (.2) Lus10003903 [exp] 135 / 4e-35 AT5G41800 695 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10014605 [exp] 122 / 2e-30 AT5G40780 744 / 0.0 lysine histidine transporter 1 (.1.2) Lus10037913 [exp] 110 / 2e-26 AT1G08230 305 / 9e-100 L-GAMMA-AMINOBUTYRIC ACID TRANSPORTER 1, Transmembrane amino acid transporter family protein (.2) Lus10041581 [exp] 107 / 3e-25 AT5G40780 798 / 0.0 lysine histidine transporter 1 (.1.2) Lus10022329 [exp] 107 / 5e-25 AT5G40780 798 / 0.0 lysine histidine transporter 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [poplar] [flax] APC PF01490 [poplar] [flax] Aa_trans Transmembrane amino acid transporter protein
Representative CDS sequence Show only first row Show all	>Potri.010G194600.1 pacid=42799020 polypeptide=Potri.010G194600.1.p locus=Potri.010G194600 ID=Potri.010G194600.1.v4.1 annot-version=v4.1 ATGGAAGTCAATGGAGATGGAGCAGGGAACTCTACCAGGCCTCGAAAAGTTTTTGACGAGGATAACTCAGCAGTTGAGATTCCCGAGACTGCCCATCAGA TTAGCAGTGATTCATGGTTTCAAGTTGGTTTTGTCCTCACCACCGGTATCAATAGTGCCTATGTATTGGGATATTCTGGGACCATTATGGTTCCCTTGGG CTGGATACCTGGAGTAGTAGGTTTGATCATAGCCACTGCAATATCACTGTATGCAAATTCTCTTATAGCCGAGCTGCATGAATTTGGAGGGAGGAGACAT ATCAGATACAGAGATCTTGCAGGATTTATCTATGGTAGGAAAGCTTATTCTTTAACCTGGGGATTGCAATATGTTAATCTTTTTATGATTAACACGGGAT ACATCATTTTGGCTGGATCAGCTTTGAAGGCTGTCTATGTTCTTTTTAGCGATGACCATGTCATGAAACTCCCATACTTCATTGCCATTTCTGGGTTTGT ATGTGCCTTGTTTGCCATGTCAATTCCCCACTTGTCTGCTCTCAGACTTTGGTTGGGAGTTTCCACGGTTTTCAGCCTGATATATATAGTTGTGGCGTTT GTGCTTTCTGTTAAGGATGGAATTGAAGCACCAGCCAGGGATTACAGCATTCCAGGAACAACAAGAAGCAAAATCTTTACAACAATAGGAGCATCTGCTA ATCTGGTTTTTGCATTTAATACAGGAATGCTTCCAGAAATACAGGCAACAATAAAACAGCCCGTTGTCAGTAACATGATGAAATCACTTTACTTCCAATT CTCGGCTGGAGTCTTACCAATGTATGCAGTGACATTTATTGGATATTGGGCTTATGGATCTTCAACATCAAGCTATTTGCTTAGCAGCGTCAATGGCCCG GTTTGGGTGAAGGCATTGGCCAACATCTCTGCATTCCTTCAAACAGTCATTGCTCTGCATATATTTGCAAGCCCAATGTATGAGTACTTGGATACAAAGT ACGGGATTATAGGAAGTCCATTTTCAATTCGCAACTTGTCGTTTAGGGTCGGGGTAAGAGGCGGCTACCTAACTATTAACACGCTGGTGGCAGCTCTTCT GCCTTTCCTTGGAGATTTTATGAGCCTTACTGGCGCTATAAGCACCTTCCCCCTTACATTTATTCTGGCCAACCACATGTACCTAAAAGCAAAGAAGAAC AAATTGACTTCTCTACAAAAGCTTTGGCATTGGTTCAATGTTTATTTTTTCGGCCTTATGTCCATTGCAGCAGCAGTTTCAGCTCTGAGACTTATTGCTG TAGATTCCAAAACATACCATGTATTCGCTGATTTATAG
AA sequence Show only first row Show all	>Potri.010G194600.1 pacid=42799020 polypeptide=Potri.010G194600.1.p locus=Potri.010G194600 ID=Potri.010G194600.1.v4.1 annot-version=v4.1 MEVNGDGAGNSTRPRKVFDEDNSAVEIPETAHQISSDSWFQVGFVLTTGINSAYVLGYSGTIMVPLGWIPGVVGLIIATAISLYANSLIAELHEFGGRRH IRYRDLAGFIYGRKAYSLTWGLQYVNLFMINTGYIILAGSALKAVYVLFSDDHVMKLPYFIAISGFVCALFAMSIPHLSALRLWLGVSTVFSLIYIVVAF VLSVKDGIEAPARDYSIPGTTRSKIFTTIGASANLVFAFNTGMLPEIQATIKQPVVSNMMKSLYFQFSAGVLPMYAVTFIGYWAYGSSTSSYLLSSVNGP VWVKALANISAFLQTVIALHIFASPMYEYLDTKYGIIGSPFSIRNLSFRVGVRGGYLTINTLVAALLPFLGDFMSLTGAISTFPLTFILANHMYLKAKKN KLTSLQKLWHWFNVYFFGLMSIAAAVSALRLIAVDSKTYHVFADL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G39890		ATPROT1, ProT1	proline transporter 1 (.1.2)		Potri.010G194600 [exp]	0	1	PtrProT2
AT3G54360			zinc ion binding (.1)		Potri.001G036400 [exp]	2.82	0.8141
AT5G50230			Transducin/WD40 repeat-like su...		Potri.015G087200 [exp]	5.09	0.7884
AT5G25110		CIPK25, SnRK3.2...	SNF1-RELATED PROTEIN KINASE 3....		Potri.006G263500 [exp]	6.63	0.7866	CIPK25.1
AT5G49900			Beta-glucosidase, GBA2 type fa...		Potri.019G072800 [exp]	6.92	0.7395
AT3G56190		ASNAP, ALPHA-SN...	alpha-soluble NSF attachment p...		Potri.016G129900 [exp]	12.96	0.7616	ASNAP.2
AT5G27020			unknown protein		Potri.013G011950 [exp]	20.32	0.7804
AT1G77220			Protein of unknown function (D...		Potri.002G071400 [exp]	20.34	0.7663
AT3G50120			Plant protein of unknown funct...		Potri.007G047700 [exp]	23.02	0.7066
AT3G51830		ATG5, SAC8	SAC domain-containing protein ...		Potri.016G118300 [exp]	24.04	0.7272	ATG5.1
AT3G23090			TPX2 (targeting protein for Xk...		Potri.008G162800 [exp]	25.09	0.7861

Compare expression of checked genes

Potri.010G194600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.