Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13550 898 / 0 SULTR4;1 sulfate transporter 4.1 (.1) AT3G12520 882 / 0 SULTR4;2 sulfate transporter 4;2 (.1.2) AT3G51895 362 / 1e-115 AST12, ATST1, SULTR3;1 sulfate transporter 3;1 (.1) AT4G08620 352 / 5e-112 SULTR1.2, SULTR1;1 sulphate transporter 1;1 (.1) AT4G02700 346 / 8e-110 SULTR3;2, AST77 sulfate transporter 3;2 (.1) AT1G23090 330 / 6e-104 SULTR3;3, AST91 sulfate transporter 91 (.1) AT1G22150 331 / 9e-104 SULTR1;3 sulfate transporter 1;3 (.1) AT5G19600 324 / 2e-101 SULTR3;5 sulfate transporter 3;5 (.1) AT3G15990 323 / 5e-101 SULTR3;4 sulfate transporter 3;4 (.1) AT1G78000 323 / 7e-101 SEL1, SULTR1;2 SELENATE RESISTANT 1, sulfate transporter 1;2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G049500 [exp] 1152 / 0 AT5G13550 921 / 0.0 sulfate transporter 4.1 (.1) Potri.005G167300 [exp] 371 / 3e-119 AT1G22150 996 / 0.0 sulfate transporter 1;3 (.1) Potri.002G092500 [exp] 368 / 4e-118 AT1G22150 973 / 0.0 sulfate transporter 1;3 (.1) Potri.005G213500 [exp] 361 / 2e-115 AT3G51895 1040 / 0.0 sulfate transporter 3;1 (.1) Potri.010G082700 [exp] 360 / 4e-115 AT3G51895 995 / 0.0 sulfate transporter 3;1 (.1) Potri.002G049500 [exp] 351 / 1e-111 AT3G51895 1028 / 0.0 sulfate transporter 3;1 (.1) Potri.008G156600 [exp] 348 / 2e-110 AT3G51895 949 / 0.0 sulfate transporter 3;1 (.1) Potri.010G111700 [exp] 342 / 5e-108 AT1G23090 1028 / 0.0 sulfate transporter 91 (.1) Potri.008G130400 [exp] 329 / 4e-103 AT1G23090 998 / 0.0 sulfate transporter 91 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023440 [exp] 945 / 0 AT5G13550 955 / 0.0 sulfate transporter 4.1 (.1) Lus10040319 [exp] 945 / 0 AT5G13550 962 / 0.0 sulfate transporter 4.1 (.1) Lus10030321 [exp] 830 / 0 AT5G13550 830 / 0.0 sulfate transporter 4.1 (.1) Lus10003294 [exp] 550 / 0 AT5G13550 674 / 0.0 sulfate transporter 4.1 (.1) Lus10041111 [exp] 380 / 1e-122 AT1G22150 1001 / 0.0 sulfate transporter 1;3 (.1) Lus10036437 [exp] 367 / 2e-117 AT1G22150 991 / 0.0 sulfate transporter 1;3 (.1) Lus10029616 [exp] 365 / 8e-117 AT1G22150 973 / 0.0 sulfate transporter 1;3 (.1) Lus10006612 [exp] 352 / 7e-112 AT3G51895 966 / 0.0 sulfate transporter 3;1 (.1) Lus10039364 [exp] 341 / 1e-106 AT3G51895 966 / 0.0 sulfate transporter 3;1 (.1) Lus10025767 [exp] 332 / 5e-104 AT3G15990 947 / 0.0 sulfate transporter 3;4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [poplar] [flax] APC PF00916 [poplar] [flax] Sulfate_transp Sulfate permease family CL0502 [poplar] [flax] STAS PF01740 [poplar] [flax] STAS STAS domain
Representative CDS sequence Show only first row Show all	>Potri.010G211400.1 pacid=42799943 polypeptide=Potri.010G211400.1.p locus=Potri.010G211400 ID=Potri.010G211400.1.v4.1 annot-version=v4.1 ATGGAGATAACCTACGCCTCTTCAAGCCATCGTTATCTTCCAACAATGTCTGCCTCCTCCTCCTCCTCACTCGGATCCTCCATGCCGAACCGACCTGTCA AAACCATTCCTCTTCAACACCCAAACACGACGTCGTCCTCCTCCACTCCCTTGCCTCAGGCCATGTTTTGGAGATGGACCGCCAAAATAAAACGAACCAC TCCTTCTCAATGGATCGATACCTTTCTTCCTTGTTACCGTTGGATTAGAACTTATAAATGGCGCGAGTATTTGCAGCCTGATCTCATGGCCGGTCTCACC GTCGGTATCATGCTCGTCCCCCAGGCAATGTCATACGCAAAATTAGCAGGACTGCATCCAATTTATGGACTGTATACTGGTTTTATACCAATTTTTGTGT ATGCCATATTTGGGTCATCTCGACAACTTGCAATTGGTCCAGTGGCATTGGTTTCTCTGCTAGTGTCTAATGTTTTGGGTGGAATGGATTTATCTGACGA GTTATATACAGAACTTGCGATTTTATTAGCATTTATGGTTGGGATAATGGAATGTATAATGGCATTTTTGAGGCTTGGATGGCTTATCCGCTTCATCAGC CACTCTGTGATTTCTGGCTTCACAACTGCCTCAGCCATTGTCATTGCACTATCCCAAGCAAAGTATTTCTTGGGGTATGATGTTGTACGAAGTAGCAAGA TTGTGCCATTGATTAAAAGCATAATATCTGGAGCGCATAAGTTCTCCTGGCCTCCTTTTGTGATGGGATCTTGCATCCTTGCAATACTCTTGGTCATGAA GCATTTGGGAAAATCAAGGAAGCGGTTCAGGTTCCTACGACCAGCAGGTCCACTTACAGCGGTCGTTTTGGGTACAGTGTTTGTGAAAATATTTCATCCA TCCTCAATTTCTTTGGTAGGAGACATCCCCCAGGGACTCCCAAGCTTCTCTATTCCAAAAAAATTTGAGTATGCGAAGTCTTTAATCCCGACAGCAATGC TTATTACTGGGGTAGCCATATTGGAATCTGTTGGGATCGCTAAAGCTTTGGCAGCAAAAAATCGGTATGAGTTGGATTCAAGTCAAGAGTTGTTCGGTCT TGGTTTGGCCAATATCTTGGGCTCATTCTTTTCAGCATACCCTTCAACAGGCTCCTTTTCTAGGTCAGCTGTAAATAATGACAGTGGGGCCAAAACTGGC TTAGCTGGAATTGTAGCTGGAACCATTATGGGCTGTTCTCTTCTATTCTTGACTCCGTTATTCGAATACATACCACAGTGTGGTCTAGCTGCAATAGTGA TCTCTGCTGTGATGGGCCTGGTGGATTATCATGAGGCTATCTTCTTATGGCATGTAGATAAGAAAGATTTTGTTCTTTGGATCATTACCAGTACTACAAC ATTGTTCCTTGGCATTGAGATTGGTGTCCTTGTTGGGGTTGGGGTATCACTTGCTTTTGTCATCCACGAATCAGCAAATCCACACATTGCTGTCCTGGGA CGTCTTCCAGGCACCACAGTTTACAGAAATATCCAACAGTATCCAGAAGCATATACTTACAATGGAATTGTGATTGTTCGCATTGATGCACCTATCTATT TTGCTAATATAAGTTTCATAAAGGACAGGTTACGGGAATATGAAGCTGATATTGACAAGTCTGCCAGACATGGGCCAGAAGTCGAAAGGATTCATTTTCT GATTTTAGAGATGTCACCCATTACATATATAGACTCCAGTGCTGTTCAAGCTTTGAAAGACTTGCAACAGGAGTACAAATCACGGGATATTGAGATCTGT ATTGCCAATCCAAACCAAGATGTTCTGCTGACCTTAACAAAAGCTGGTATTGTAGAGCTCATTGGTAAGGAGTGGTACTTTGTGAGAGTACATGATGCTG TTCAAGTTTGCCTTCAACACGTTCAGAGCTTAAACCAAACTCCTAAGAACCCAGATTCATTTGCTGAGGATAAACCAAGTTTCTTCCAGAGATTATCGAA GCGGAGAGAAGAGGATTTATCAATTGCAGAGCTAGAGTCAGGTGATAAAATTACAGAGCCACACTTGGAACCATTGTTGTCTCGGAAGTCTTGA
AA sequence Show only first row Show all	>Potri.010G211400.1 pacid=42799943 polypeptide=Potri.010G211400.1.p locus=Potri.010G211400 ID=Potri.010G211400.1.v4.1 annot-version=v4.1 MEITYASSSHRYLPTMSASSSSSLGSSMPNRPVKTIPLQHPNTTSSSSTPLPQAMFWRWTAKIKRTTPSQWIDTFLPCYRWIRTYKWREYLQPDLMAGLT VGIMLVPQAMSYAKLAGLHPIYGLYTGFIPIFVYAIFGSSRQLAIGPVALVSLLVSNVLGGMDLSDELYTELAILLAFMVGIMECIMAFLRLGWLIRFIS HSVISGFTTASAIVIALSQAKYFLGYDVVRSSKIVPLIKSIISGAHKFSWPPFVMGSCILAILLVMKHLGKSRKRFRFLRPAGPLTAVVLGTVFVKIFHP SSISLVGDIPQGLPSFSIPKKFEYAKSLIPTAMLITGVAILESVGIAKALAAKNRYELDSSQELFGLGLANILGSFFSAYPSTGSFSRSAVNNDSGAKTG LAGIVAGTIMGCSLLFLTPLFEYIPQCGLAAIVISAVMGLVDYHEAIFLWHVDKKDFVLWIITSTTTLFLGIEIGVLVGVGVSLAFVIHESANPHIAVLG RLPGTTVYRNIQQYPEAYTYNGIVIVRIDAPIYFANISFIKDRLREYEADIDKSARHGPEVERIHFLILEMSPITYIDSSAVQALKDLQQEYKSRDIEIC IANPNQDVLLTLTKAGIVELIGKEWYFVRVHDAVQVCLQHVQSLNQTPKNPDSFAEDKPSFFQRLSKRREEDLSIAELESGDKITEPHLEPLLSRKS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G13550		SULTR4;1	sulfate transporter 4.1 (.1)		Potri.010G211400 [exp]	0	1
AT4G23990		ATCSLG3	ARABIDOPSIS THALIANA CELLULOSE...		Potri.003G142500 [exp]	8.00	0.8954
AT1G22150		SULTR1;3	sulfate transporter 1;3 (.1)		Potri.005G167300 [exp]	13.92	0.9109
AT4G29990			Leucine-rich repeat transmembr...		Potri.019G094600 [exp]	17.88	0.8811
AT1G22360		ATUGT85A2, AT2	UDP-glucosyl transferase 85A2 ...		Potri.006G022300 [exp]	35.24	0.8094
AT4G04890	HD	PDF2	protodermal factor 2 (.1)		Potri.004G020400 [exp]	36.20	0.8784	ATML1.2
AT1G01380	MYB	ETC1	ENHANCER OF TRY AND CPC 1, Hom...		Potri.011G026300 [exp]	43.49	0.8609
					Potri.001G227750 [exp]	45.05	0.8900
AT3G21750		UGT71B1	UDP-glucosyl transferase 71B1 ...		Potri.016G016200 [exp]	47.83	0.8853
AT2G01900			DNAse I-like superfamily prote...		Potri.018G144101 [exp]	49.69	0.8720
AT5G36930			Disease resistance protein (TI...		Potri.011G008868 [exp]	56.92	0.8473

Compare expression of checked genes

Potri.010G211400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.