Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52250 645 / 0 MYB Duplicated homeodomain-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G041900 [exp] 2533 / 0 AT3G52250 645 / 0.0 Duplicated homeodomain-like superfamily protein (.1) Potri.008G210200 [exp] 45 / 0.0007 AT2G47820 375 / 4e-117 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040386 [exp] 1155 / 0 AT3G52250 573 / 2e-175 Duplicated homeodomain-like superfamily protein (.1) Lus10023504 [exp] 1119 / 0 AT3G52250 577 / 3e-177 Duplicated homeodomain-like superfamily protein (.1) Lus10036515 [exp] 998 / 0 AT3G52250 541 / 2e-164 Duplicated homeodomain-like superfamily protein (.1) Lus10041413 [exp] 993 / 0 AT3G52250 545 / 2e-166 Duplicated homeodomain-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00249 [poplar] [flax] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.010G220000.1 pacid=42800193 polypeptide=Potri.010G220000.1.p locus=Potri.010G220000 ID=Potri.010G220000.1.v4.1 annot-version=v4.1 ATGCCGCCAGAGCCATTGCCGTGGGATCGGAAGGACTTCTTTAAGGAGAGGAAGCACGAGAGGTCAGAGTCGACGTCTTCTTCTTTTGGTGGCGGGTCTA CGCCGCGATGGAGGGAATTTCCTTTTTCTTCCGCGAATAATTATGGATCCCCTCGCGATTTCAATCGTTGGGGTCCCCACGACTTTCGCAGGCCTCCTGG TCATGGTAAGCAGGGTGGTTGGCACATGCTTGCTGAAGAATCTGGTCATGTGTTGTCACCTTATAGGTTGAGTGACAAGATGCTGGAAGATGAGAATTGC CGGCCGTTTTCGCGTGGAGATGGAAGATATGGCCGGAACAATAGGGAAAATAGGGGGTATGTCAGCCAGAGAGATTGGAGAGGTGGTCATTCATGGGAAA TGATCAATGGGTCTCCGAATATGCCTGGGAGGCAGCATGATGTGAATAATGATCAGAGGTCAGTTGATGAAATGCTAATGTATCCTCCCTCTCATCCTGC TCATTCTGACTTTGTTAACTCATGGGATCAGCATCAATTGAAAGACCAAGACGATAATAATAAGATGGGTGGTGTCGTTGGTTCGGGCACAGGCCAAAGA GGTGATAGAGAGATCCCACTTGATTGGAGGCCTCTTAAATGGACACGCTCTGGAAGCTTGTCTTCCCGAGGGTCTGGTTTCAGTCATTCAAGTAGCTCGA AGAGCCTTGGGGGTGTAGATTCAAATGAAGGAAAGACTGAGTTGCAGCCAAAGAATGCCACTCCAGTTCAATCTCCATCAGTGGATGTTGCAGCCCGCGT TACTTCTGTAGCACTATCTGAAGAGATTTCTTCTAGGAAAAAGGCGCGCCTTGGATGGGGTGAGGGGCTGGCAAAGTATGAGAAGAAGAAAGTTGAAGGC CCAGATGCAAGTGAGAACAAAGATGGAGCTGCCGTTTCCGCTAGTAACATGGAGTCCATTCATTTTCAAACTTCAAACTTGGCTGACAAGAGCCCCAGAG TTATGGGCTTTTCAGATTGTGCATCTCCTGCAACGCCTTCCTCCGTTGCTTGTAGTTCCTCACCAGGTTTAGAGGAGAAAACTTTTCTGAAGTCAACAAA TGCTGATAACATTGCTAGTAACTTATGTGGTTCACCTAGTGTTGGTTCTCAAAGCCATATTGAGGGATTATCTTTTAATTTAGAGAAGATGGATGTTAGT TCTATAGCTAATCTGGGATCTTCCCTTGCTGAATTGCTTCAGTCTGATGATCCAAGTTCTATGGACTCTGGTTTTGTGAGGTCTACTGCAATGAATAAGG TACTTGTATGGAAAAGTGACATTTCAAAGGCATTGGAATTGACGGAATCTGAAATTGATTCTCTTGAAAATGAACTTAAGTCCATGAAATTTGAATATGG AAGCAGGTGTCCCTGGCCTGCAGCATCCAGTCCTCTGTTTGTGAGTGATGTAAAACCTTGTAGTGTACAGGGGGTGGCCTCTAACAGTGTCCCTCGACCT TCTCCCTTGCAAGTTGCATCACGTGGGGATGGAATTGTGGAGAAGGTTTCTCTTTGCAATGGTGGGCTGGAAGTTCATGGTGATGTTAAGGATGATGATA TTGATAGTCCTGGAACTGCTACATCTAAGCTTGTTGAACCAGTTTGCTTGGTGAGGATAGATTCATCGACCGTTGCCTTGGAAAATGATTTTGATGGTAT TCAGTCTGCAAGGATGGACTTGAAAGGCCCAGTTCCCCGTGCTGATGATGAAGAGACTGGTGTATTTGCATGCAAAGATGATGTAATTTCTTCTGGTGAT GTGATTTCAGAAACAAATGGAGAAGATAATTTATGTAGTTTAATACTGGCTTCTAATAAAGAATCTGCTAGTGGAGCATCTGAAGTATTCAATAAGTTAT TTCCTAGTGATCAGTGTAAGTTTGATTTTTCGTGTGTTACCAATGGATCCTCTTGGCAGAGTGGTGACTTAGTTGTGGAAAAAATTGCTAAAAAGAAACG GCTATTAAGATTTAAGGAGACAGCTGTAACCCTTAAGTTTAAAGCTTTTCAGCATCTGTGGAAGGAAGAAATGCGACTGCCTTCTTTAAGGAAGTATCCT GCGAAGTCTCAGAAGAAATGGGAACCAAGCTTGCGGACAACTCATATTGGGTATCAAAAACATCGTTCTTCTATTCGTGCTCGATTCTCTTCTCCTGCTG GAAATTTGAGCCTGGTCCCTACAACAGAGATCCTCAACTTCACAAGCAAGCTGCTTTCAGATTCTCAGGTCAAGCCATACAGGAATGCTTTGAAAATGCC AGCTCTAATTTTGGACAAGAAAGAGAAGATGGGATCACGGTTTATCTCTAGTAATGGATTGGTTGAAGATCCTTATGCTGTTGAGAAGGAAAGAGCTATG ATCAATCCCTGGACTTCTGATGAGAAAGAAATTTTCATGCATAAGCTAGCAACGTTTGGGAAGGATTTCCGAAAAATTGCTTCCTTTCTTGATCACAAGT CAACTGCAGACTGTGTTGAATTCTACTACAAAAATCACAAATCTGATTGTTTTGAAAAAACCAAGAAGAGTAAGCAAACTAAATCTTCTACTAACTACTT GATGGCATCAAGTACGAAATGGAATCGTGAATTGAACGCTGCTTCGCTTGATATTTTGGGTGTGGCTTCACGGATTGCAGCTGATGCTGACCATGCTATG AACAGTCAGCAGTTGTGCTCTGGGAGAATCTTTTCCAGAGGCTATCGTAATTCTAAAATAACAGAAGGTGATGATGGTATTTTAGAAAGATCAAGCAGTT TTGATGTTCTTGGGAATGAAAGAGAGACTGTTGCTGCTGATGTCTTGGGTTCACTGTCCTCAGAGGCCATGGGTTCTTGTATTACTACTTCTGTTGATCT CATGGAGGGCTATCGAGAACAGAAGTGCCAAAAGGTGGATTCTGTTGCAAAAGCACCTTTGATATCTGATGTTATGGAGAATTTTGATGAAGAAACCTGC TCAGATGAGAGTTGTGGGGAGATGGATCCTACTGATTGGACAGATGAGGAAAAGTCCATCTTTATACAAGCTGTGTCATCTTATGGCAAGGATTTTGCAA TGATCTCCCAAGTTGTCAGGACAAGAACTAGAGACCAGTGCAAGGTGTTTTTTAGCAAGGCCCGGAAGTGTCTTGGACTGGATTTGATGCATCCTGGACC CAGAAAGTCCAGGACACCAGTTAGCGATAATGCAAATGGAGGTGGGAGTGACACTGAAGATGCTTGTGCCATGGAGACTGGATCAGCTATCTGTAGTGAT AAGTTGGACTCTAAGATTGATGAGGACTTGCCATCGTCCATCATGAATACAGAGCATGATGAATCTGATGCAGAGGAGATGATAGGATTGCATGAGGACC TGAATGGAACTGAAGGCAATAATGCATGTGGGATATTAGATAAGAATGATTCCAGGGTTGTAGATGAAATGGTTTCTGATCCATCTGAGGCAGGGCAGAG TGCTGATCTAGCTTTCAATGTTGACAGCAAATTCGTGAATACTGTTCATCAGTCAGAGCCTGTACAGGCCCAGAAAATGTTGATTGCATCAGCTAATGCA GAATCTGAAAGAGATCAAGTAGCTGACAAGGTTGTTTCTGTTGTCGAATCACTGTCTGTTGTAGGTGCAGTTGATGTCAGCACATCCAATGCAAGTACTG CAGTTGAGTTGAAAGGTGTAGCTGAGGTCTCTGGTAATGGATTGCAAAATGGTTTTACAGAGCAAGAACTTTTTTTACCTGAAAATAGTTTGGGTAGTCC AAGTGGCTTGATGCAAGATTCAACCAGCAATGCTTCACACCATCCTGTACATATGGATTCCTGTTCAGAATTCAGCTGTAGTTTAGAAAATATGCATCAA GTCTCTGTCCAGTTAGAATCTGTGGAAAAGCCTCCTGTCATCTCATTGCCACAGGAAAATAATCTTGCTTTAACAAATTCCATCTTACAAGATTCTGCTG TCATCCAATTTGAGAAAAGGCACAAACAGGATACACTTCAGGAGAGCAGTAGGGATAAGCAGGGTAAAATATCTGTTAGTGGAGATGATTACTTCCAGCA TCTGTCGGATCATCCTTTGTTGAACCATAATGAATCCTCCCAGATCCCCCGGGGTTATTCACTGCAAATTCCTACAAAGAAAGAGATGAATGGGGTTATT TCTGGTAGGCTTCTTTCTGGAGCTCAAAGCCTTCCAAACTCAGAAAAGAATGTCACCAGTCAGTCTGAAGCTCAGGAGTGCTATCTTCAAAAGTGTAGCA GTTTGAAAGCTCAGCATTCAGTGCCTGAGCTTCCATTCATATCCCAACGGCGTGGACGTGGAAGTGATCATCTGAGAGATCATTCACGGAGGTCATCAGA TGTGGAAAAGCCATGTAGGAATGGTGATGTTAAACTGTTTGGTAAAATACTCAGTAACCCCTTGCAAAAGCAGAATTCTAGTGCTCGTGAGAATGGTGAA AAAGAGGCCCAGCATCTTAAACCAACAAGCAAGTCCTCAACTTTTAAATTTACTGGCCATCACCCTACAGAGGGTAACATGACTCTCTTGAAGTGTGATC CTAATAATCAGCCTGGCCTGGAGAATGTTCCCATGAGAAGCTATGGTTTCTGGGATGGGAACAGAATACAGACTGGGTTTCCATCTATGCCTGATTCTGC TACTTTACTGGTCAAGTATCCTGCTGCATTTAGCAATTACCATGTGTCATCATCCAAAATGCCCCAGCAGACATTGCAAGCTGCTGTCAAGAGTAACGAG TGTAATCTGAATGGCATTTCTGTTTTTCCTTCAAGGGAAATAACTGGGAGCAATGGAGTGGTGGACTATCAAATGTACAGAAGCCATGACAGCACTGGAG TGCCGTCATTTACTGTAGATATGAAGCAGCGGGAGGTTATATTAGCTGAGATGCAAAGACTGAATGGGCAGCAAACAAGGGGGATGGCAGGGGTGAATGT TGTTGGAAGAGGGGGGATTCTTGTTGGGGGAGCTTGCACAGGTGTTTCAGATCCTGTGGCAGCCATTAAACGGCACTATGCCAAAGCTGATCAGTATGGT GGGCAAAGTGGAATTGTCTTCAGAGAAGAAGAATCTTGGAGAGGTAAGGGGGACATAGGCAGGTAG
AA sequence Show only first row Show all	>Potri.010G220000.1 pacid=42800193 polypeptide=Potri.010G220000.1.p locus=Potri.010G220000 ID=Potri.010G220000.1.v4.1 annot-version=v4.1 MPPEPLPWDRKDFFKERKHERSESTSSSFGGGSTPRWREFPFSSANNYGSPRDFNRWGPHDFRRPPGHGKQGGWHMLAEESGHVLSPYRLSDKMLEDENC RPFSRGDGRYGRNNRENRGYVSQRDWRGGHSWEMINGSPNMPGRQHDVNNDQRSVDEMLMYPPSHPAHSDFVNSWDQHQLKDQDDNNKMGGVVGSGTGQR GDREIPLDWRPLKWTRSGSLSSRGSGFSHSSSSKSLGGVDSNEGKTELQPKNATPVQSPSVDVAARVTSVALSEEISSRKKARLGWGEGLAKYEKKKVEG PDASENKDGAAVSASNMESIHFQTSNLADKSPRVMGFSDCASPATPSSVACSSSPGLEEKTFLKSTNADNIASNLCGSPSVGSQSHIEGLSFNLEKMDVS SIANLGSSLAELLQSDDPSSMDSGFVRSTAMNKVLVWKSDISKALELTESEIDSLENELKSMKFEYGSRCPWPAASSPLFVSDVKPCSVQGVASNSVPRP SPLQVASRGDGIVEKVSLCNGGLEVHGDVKDDDIDSPGTATSKLVEPVCLVRIDSSTVALENDFDGIQSARMDLKGPVPRADDEETGVFACKDDVISSGD VISETNGEDNLCSLILASNKESASGASEVFNKLFPSDQCKFDFSCVTNGSSWQSGDLVVEKIAKKKRLLRFKETAVTLKFKAFQHLWKEEMRLPSLRKYP AKSQKKWEPSLRTTHIGYQKHRSSIRARFSSPAGNLSLVPTTEILNFTSKLLSDSQVKPYRNALKMPALILDKKEKMGSRFISSNGLVEDPYAVEKERAM INPWTSDEKEIFMHKLATFGKDFRKIASFLDHKSTADCVEFYYKNHKSDCFEKTKKSKQTKSSTNYLMASSTKWNRELNAASLDILGVASRIAADADHAM NSQQLCSGRIFSRGYRNSKITEGDDGILERSSSFDVLGNERETVAADVLGSLSSEAMGSCITTSVDLMEGYREQKCQKVDSVAKAPLISDVMENFDEETC SDESCGEMDPTDWTDEEKSIFIQAVSSYGKDFAMISQVVRTRTRDQCKVFFSKARKCLGLDLMHPGPRKSRTPVSDNANGGGSDTEDACAMETGSAICSD KLDSKIDEDLPSSIMNTEHDESDAEEMIGLHEDLNGTEGNNACGILDKNDSRVVDEMVSDPSEAGQSADLAFNVDSKFVNTVHQSEPVQAQKMLIASANA ESERDQVADKVVSVVESLSVVGAVDVSTSNASTAVELKGVAEVSGNGLQNGFTEQELFLPENSLGSPSGLMQDSTSNASHHPVHMDSCSEFSCSLENMHQ VSVQLESVEKPPVISLPQENNLALTNSILQDSAVIQFEKRHKQDTLQESSRDKQGKISVSGDDYFQHLSDHPLLNHNESSQIPRGYSLQIPTKKEMNGVI SGRLLSGAQSLPNSEKNVTSQSEAQECYLQKCSSLKAQHSVPELPFISQRRGRGSDHLRDHSRRSSDVEKPCRNGDVKLFGKILSNPLQKQNSSARENGE KEAQHLKPTSKSSTFKFTGHHPTEGNMTLLKCDPNNQPGLENVPMRSYGFWDGNRIQTGFPSMPDSATLLVKYPAAFSNYHVSSSKMPQQTLQAAVKSNE CNLNGISVFPSREITGSNGVVDYQMYRSHDSTGVPSFTVDMKQREVILAEMQRLNGQQTRGMAGVNVVGRGGILVGGACTGVSDPVAAIKRHYAKADQYG GQSGIVFREEESWRGKGDIGR

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G52250	MYB		Duplicated homeodomain-like su...		Potri.010G220000 [exp]	0	1
AT4G08350		GTA2, GTA02	global transcription factor gr...		Potri.009G124200 [exp]	1.00	0.9324
AT3G18640	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Potri.007G107800 [exp]	2.82	0.9023
AT2G24530			unknown protein		Potri.018G005700 [exp]	3.16	0.8998
AT4G16310		LDL3	LSD1-like 3 (.1)		Potri.005G235400 [exp]	3.46	0.9245
AT3G63070			Tudor/PWWP/MBT domain-containi...		Potri.014G138700 [exp]	3.74	0.8923
AT2G36720			Acyl-CoA N-acyltransferase wit...		Potri.006G120200 [exp]	3.87	0.9045
AT5G53150			DNAJ heat shock N-terminal dom...		Potri.001G057200 [exp]	4.35	0.8817
AT1G06230		GTE4	global transcription factor gr...		Potri.013G118900 [exp]	4.58	0.9134
AT3G11540		SPY	SPINDLY, Tetratricopeptide rep...		Potri.006G208900 [exp]	5.91	0.9036	Pt-SPY.2
AT3G52250	MYB		Duplicated homeodomain-like su...		Potri.008G041900 [exp]	6.00	0.9108

Compare expression of checked genes

Potri.010G220000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.