Plant FIBer expression Database

Potri.010G221900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G19500 141 / 1e-36 Tryptophan/tyrosine permease (.1)
AT2G33260 97 / 1e-21 Tryptophan/tyrosine permease (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G224950
[exp]
166 / 1e-45 AT5G19500 606 / 0.0 Tryptophan/tyrosine permease (.1)
Potri.008G040400
[exp]
119 / 1e-32 AT5G19500 58 / 2e-11 Tryptophan/tyrosine permease (.1)
Potri.019G031800
[exp]
84 / 7e-17 AT2G33260 567 / 0.0 Tryptophan/tyrosine permease (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10036527
[exp]
528 / 0 AT5G19500 173 / 3e-48 Tryptophan/tyrosine permease (.1)
Lus10041401
[exp]
526 / 0 AT5G19500 175 / 1e-48 Tryptophan/tyrosine permease (.1)
Lus10036099
[exp]
155 / 9e-42 AT5G19500 588 / 0.0 Tryptophan/tyrosine permease (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0062 APC PF01490 Aa_trans Transmembrane amino acid transporter protein
Representative CDS sequence
>Potri.010G221900.9 pacid=42799187 polypeptide=Potri.010G221900.9.p locus=Potri.010G221900 ID=Potri.010G221900.9.v4.1 annot-version=v4.1
ATGGATACACAGTGCATGCCTTCATCTTCTTCCTTGTACTCCAAAAGTCACAAAAATGTCACTGTGATTCCACCGTTGATTAGAAGGCAACAAAAGAACA
CTACAGTTTACTTCAGCCGTGGCTATCTTGCTTGTGCCTGCAGATGGCAGCAAGAGCGACGGGAAATTACAACTGAAAGGCCTTTAGTAACGAAGGCAAA
GAAAGTTCCTGTAGAACTGAGTGAGGAGCCTGCTAAAGTAACTGGGAAGAAAGGAACTGTTGCTGGTGCTGTTGCTCTTATTATTGGTACCAGTATAGGT
ACTGGGATACTTGCCCTGCCACAGAAAGCTTCTCCTGCAGGAGTCATTCCAAGTTCAATATGTATGATAGTATGTTGGGGTTTTCTCCTAATTGAAGCAC
TTTTGCTTGTTGAGATCAATGTGGGTTTGAGGAGGAAGCAAGGGAAAAATGAAGATGAGAGTGAACTAGAGGTCATATCTATTAGGACTATGGCTCAAGA
GACCCTAGGAGACTGGGGTGGAACCTTGGCTACCATTACCTATGTCTTCTTGGGTTACACTTCCATGATTGCCTATAGTTCCAAGTCTGGAGAGATCCTT
TTTCATTTGGTAAATCTTCCAGAATCTGTTTCATCCTGCCTCTTCACTACTATATTCACTGTGCTAGTTTCCGTTGGTGGGACTCAAGCAACCGATCAAG
TCAATCAATGGCTTACTGCTTCCATGATAGGTTTGCTACTAGCGATTGAGGTGATAGCTGTTGCTTTCGGAGGGTGGTCAGGATTGGAGGGAAGTGGTGA
CTGGGGAAAAGTTCCAGCTACAATTCCTGTGATGATTTTTGCTTTAGTGTATCATGATCTAGCACCTGTTCTCTGTGCTTATTTGGGTGGTGACCTTAAG
CGACTAAGGACTTCAGTTTTGCTGGGTAGCATTGTTCCTTTGCTGGCATTGCTTGTTTGGGATGCACTTGCACTTGGCCTTTCTGCCAAGGCTGATCAAG
TTGTTGATCCAGTTTTGCTTATGAGTGAGAGATGGAGTGGGGTTTCATATATGGTAGAGGCCTTCTCACTTCTTGCAGTAGCAACATCATTGATTGGCAC
TCTCCTTGGCTTCTTGGAGTTCTTGAAGGAGCAACTGAAGAACCTCTCTAGGGTTTCGAAAGCTACACGAACATTACAGATATTACAGGAACCAATTGGG
CTGGGTGAATGGTGGGAAAGGAATAAAATCAGCTTCACGGCAAAGGCAATGGCAGTTGCTCCAACGCTAGTTGTCTCAACCATTGTTCCGGATGCATTCT
CTGCCGCCACAGACATCGCTGGAGGCTACTGCATGACAATTCTCTATGGAGTTCTCCCACCGGCAATGGCGTGGGCAATGTATAACAAGGAACGAGAGGA
CAGTAGTCAAAATGAGCTATCAAGAGTAAGGCCTGCTCTTCTTGGGGTGGGCATCTTAGCAAGTGGGATAGTGGTGGAGCAAATCTTGCAGGATTTCTCA
GCATTGCACCATTAA
AA sequence
>Potri.010G221900.9 pacid=42799187 polypeptide=Potri.010G221900.9.p locus=Potri.010G221900 ID=Potri.010G221900.9.v4.1 annot-version=v4.1
MDTQCMPSSSSLYSKSHKNVTVIPPLIRRQQKNTTVYFSRGYLACACRWQQERREITTERPLVTKAKKVPVELSEEPAKVTGKKGTVAGAVALIIGTSIG
TGILALPQKASPAGVIPSSICMIVCWGFLLIEALLLVEINVGLRRKQGKNEDESELEVISIRTMAQETLGDWGGTLATITYVFLGYTSMIAYSSKSGEIL
FHLVNLPESVSSCLFTTIFTVLVSVGGTQATDQVNQWLTASMIGLLLAIEVIAVAFGGWSGLEGSGDWGKVPATIPVMIFALVYHDLAPVLCAYLGGDLK
RLRTSVLLGSIVPLLALLVWDALALGLSAKADQVVDPVLLMSERWSGVSYMVEAFSLLAVATSLIGTLLGFLEFLKEQLKNLSRVSKATRTLQILQEPIG
LGEWWERNKISFTAKAMAVAPTLVVSTIVPDAFSAATDIAGGYCMTILYGVLPPAMAWAMYNKEREDSSQNELSRVRPALLGVGILASGIVVEQILQDFS
ALHH

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G19500 Tryptophan/tyrosine permease (... Potri.010G221900
[exp]
0 1
AT5G04140 GLS1, GLUS, GLU... FERREDOXIN-DEPENDENT GLUTAMATE... Potri.016G036900
[exp]
2.82 0.9518 Pt-GLU1.1
AT4G39970 Haloacid dehalogenase-like hyd... Potri.007G095200
[exp]
12.84 0.9157
AT2G02450 NAC LOV1, ANAC034, ... LONG VEGETATIVE PHASE 1, Arabi... Potri.004G230800
[exp]
13.41 0.9143
AT2G46420 Plant protein 1589 of unknown ... Potri.002G169900
[exp]
20.66 0.9121
AT4G03400 GH3-10, DFL2 DWARF IN LIGHT 2, Auxin-respon... Potri.013G144300
[exp]
21.35 0.8912 10,Pt-DFL2.2
AT3G24420 alpha/beta-Hydrolases superfam... Potri.006G155500
[exp]
23.36 0.9001
AT1G53230 TCP TCP3 TEOSINTE BRANCHED 1, cycloidea... Potri.001G375800
[exp]
25.09 0.9133
AT5G17520 MEX1, RCP1 MALTOSE EXCESS 1, root cap 1 (... Potri.013G076100
[exp]
27.00 0.9085
AT2G03340 WRKY WRKY3 WRKY DNA-binding protein 3 (.1... Potri.008G091900
[exp]
28.56 0.8992 WRKY3.1
AT4G24010 CSLG2, ATCSLG1 ARABIDOPSIS THALIANA CELLULOSE... Potri.003G142201
[exp]
28.80 0.9049

Potri.010G221900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.