Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	PtrCAT10,Pt-CAT6.3
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10600 781 / 0 CAT7 cationic amino acid transporter 7 (.1) AT5G04770 767 / 0 CAT6, ATCAT6 ARABIDOPSIS THALIANA CATIONIC AMINO ACID TRANSPORTER 6, cationic amino acid transporter 6 (.1) AT4G21120 396 / 3e-131 CAT1, AAT1 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) AT2G34960 361 / 7e-118 CAT5 cationic amino acid transporter 5 (.1) AT1G17120 317 / 8e-101 CAT8 cationic amino acid transporter 8 (.1) AT3G03720 217 / 1e-62 CAT4 cationic amino acid transporter 4 (.1.2) AT1G58030 201 / 1e-56 CAT2 cationic amino acid transporter 2 (.1) AT5G36940 197 / 3e-55 CAT3 cationic amino acid transporter 3 (.1) AT1G05940 184 / 8e-51 CAT9 cationic amino acid transporter 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G017100 [exp] 914 / 0 AT3G10600 778 / 0.0 cationic amino acid transporter 7 (.1) Potri.001G150700 [exp] 475 / 5e-162 AT5G04770 519 / 2e-179 ARABIDOPSIS THALIANA CATIONIC AMINO ACID TRANSPORTER 6, cationic amino acid transporter 6 (.1) Potri.003G083700 [exp] 463 / 1e-157 AT5G04770 509 / 7e-176 ARABIDOPSIS THALIANA CATIONIC AMINO ACID TRANSPORTER 6, cationic amino acid transporter 6 (.1) Potri.015G133100 [exp] 394 / 5e-130 AT4G21120 845 / 0.0 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) Potri.012G131300 [exp] 386 / 4e-127 AT4G21120 848 / 0.0 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) Potri.013G030833 [exp] 383 / 7e-126 AT4G21120 833 / 0.0 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) Potri.013G030900 [exp] 383 / 7e-126 AT4G21120 833 / 0.0 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) Potri.003G154600 [exp] 351 / 1e-113 AT2G34960 870 / 0.0 cationic amino acid transporter 5 (.1) Potri.001G378500 [exp] 329 / 5e-105 AT1G17120 785 / 0.0 cationic amino acid transporter 8 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040142 [exp] 452 / 5e-153 AT5G04770 547 / 0.0 ARABIDOPSIS THALIANA CATIONIC AMINO ACID TRANSPORTER 6, cationic amino acid transporter 6 (.1) Lus10000962 [exp] 449 / 1e-151 AT5G04770 543 / 0.0 ARABIDOPSIS THALIANA CATIONIC AMINO ACID TRANSPORTER 6, cationic amino acid transporter 6 (.1) Lus10023271 [exp] 390 / 8e-129 AT4G21120 902 / 0.0 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) Lus10001581 [exp] 383 / 2e-123 AT4G21120 915 / 0.0 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) Lus10042817 [exp] 329 / 4e-105 AT4G21120 731 / 0.0 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) Lus10005574 [exp] 327 / 4e-104 AT1G17120 811 / 0.0 cationic amino acid transporter 8 (.1) Lus10028195 [exp] 210 / 2e-60 AT1G05940 763 / 0.0 cationic amino acid transporter 9 (.1) Lus10020320 [exp] 203 / 2e-57 AT1G58030 912 / 0.0 cationic amino acid transporter 2 (.1) Lus10020322 [exp] 203 / 4e-57 AT1G58030 949 / 0.0 cationic amino acid transporter 2 (.1) Lus10005671 [exp] 201 / 2e-56 AT1G58030 958 / 0.0 cationic amino acid transporter 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [poplar] [flax] APC PF00324 [poplar] [flax] AA_permease Amino acid permease
Representative CDS sequence Show only first row Show all	>Potri.010G241000.2 pacid=42798657 polypeptide=Potri.010G241000.2.p locus=Potri.010G241000 ID=Potri.010G241000.2.v4.1 annot-version=v4.1 ATGGAGAGCAGTCATGGTTCCTCTTTCTCTAGCTTGAATTCTTACATTCAGGCCCTGGCTCAGACCCCAGCTCGTTTTGCCAGGCGGGCTGGTTCAGTCT CAACTTCTTATGAAGAAATGAGCAGGGTCAAGGCCAGGTCTGGTTCTGACATGCAAAGAACTCTTCGTTGGTATGACCTTGTTGGGTTTGGCATCGGTGG TATGGTTGGTGCTGGTGTTTTTGTCACCACTGGCCGTGCCAGCCGTGTATGCACTGGCCCATCAGTTATTATCTCTTATGCCATTGCTGGTCTCTGTGCT CTCCTCTCCGCCTTTTGTTACACCGAGTTTGCCGTCGACATGCCCGTCGCCGGCGGTGCTTTCAGTTATCTCCGTGTCACTTTTGGTGAGTTTGCAGCGT TTTTAACCGGTGCAAATCTTATAATGGATTATGTCATGTCAAACGCCGCTGTTGCTAGAAGCTTCACTGCCTATCTAGGCTCAGCAATTGGCATTTCCAC ATCAAAATGGAGAGTTGTTGTCCATGTACTCCCAGATGGCTTCAATGAAATTGATATTTTTGCAGTCCTTGTTGTCTTAGCCATTACTCTCATCATCTGC TACAGCACAAGAGAGAGTTCAGTTGTGAACATGGTGTTAACAGCCTTACACATATTGTTCATTGGGTTTGTGATACTAATGGGATTCTGGAAAGGAGATT GGAAAAACTTCACAGAGCCAGCAGACCCAAAGAACCCATCTGGGTTTTTCCCATTCGGAGCTCCTGGTGTGTTCAATGGAGCAGCAATGGTGTATCTGAG TTATATCGGATATGACGCTGTTTCTACTCTAGCTGAAGAAGTCCATAACCCAGTTAAGGATATCCCTATTGGAGTTTCAGGCTCTGTTATAATTGTCACC GTTCTCTATTGCCTCATGTCCGCTTCCATGTCCATGCTCCTCCCTTATGATATGATTGATGCAGACGCACCATTCTCAGCAGCATTTAGAGGGAAATCAG ACGGCTGGAAATGGGTGTCTAACGTGATAGGGATAGGGGCCAGCTTTGGGATCCTGACGTCATTATTAGTTGCAATGCTGGGACAAGCTAGATACATGTG TGTTATCGGACGGTCCAATGTTGTCCCTGCTTGGTTTGCCAGGGTCCACCCAAAGACATCAACGCCCGTTAATGCTTCCGCGTTTCTTGGAATCTTCACT GCAGCAATTGCTCTTTTCACTGATTTAAATGTCCTCCTCAATCTCGTATCAATCGGCACACTATTTGTCTTCTACATGGTGGCTAATGCTGTAGTTTACA GACGTTACGTAGCCATAGGGACGACTAATCCATGGCCTACATTAGCCTTCCTGTGCTCATTTTCCTTGACCTCTATCCTATTCACTCTCATTTGGCACTT CATGCCACAAGGCAAGGGAAAAGCCTTTATGCTCGGTGCTTGCGCGGTGATAGCGATTGCAATAATACAGCTCTTTCATTGCTTGGTGCCACAAGCAAGA AAGCCTGAATTTTGGGGTGTTCCATTGATGCCATGGATACCATGTGTATCTATCTTCTTGAACATATTCTTGTTGGGGTCTCTTGGTGGTCCATCCTATG TGCGGTTCGTCTTCTTTTCAGCTCTTGCTGTGCTTGTATATGTTCTGTACAGTGTCCATGCTAGCTTCGATGCTGAAGCAGAAGGCTCTTTCGGTCAAAA GAATGGTGGGATTTTGAAGGAATCAGGAGAGAGTGATCAGGACCCTAGTTTCAAAGTGTAA
AA sequence Show only first row Show all	>Potri.010G241000.2 pacid=42798657 polypeptide=Potri.010G241000.2.p locus=Potri.010G241000 ID=Potri.010G241000.2.v4.1 annot-version=v4.1 MESSHGSSFSSLNSYIQALAQTPARFARRAGSVSTSYEEMSRVKARSGSDMQRTLRWYDLVGFGIGGMVGAGVFVTTGRASRVCTGPSVIISYAIAGLCA LLSAFCYTEFAVDMPVAGGAFSYLRVTFGEFAAFLTGANLIMDYVMSNAAVARSFTAYLGSAIGISTSKWRVVVHVLPDGFNEIDIFAVLVVLAITLIIC YSTRESSVVNMVLTALHILFIGFVILMGFWKGDWKNFTEPADPKNPSGFFPFGAPGVFNGAAMVYLSYIGYDAVSTLAEEVHNPVKDIPIGVSGSVIIVT VLYCLMSASMSMLLPYDMIDADAPFSAAFRGKSDGWKWVSNVIGIGASFGILTSLLVAMLGQARYMCVIGRSNVVPAWFARVHPKTSTPVNASAFLGIFT AAIALFTDLNVLLNLVSIGTLFVFYMVANAVVYRRYVAIGTTNPWPTLAFLCSFSLTSILFTLIWHFMPQGKGKAFMLGACAVIAIAIIQLFHCLVPQAR KPEFWGVPLMPWIPCVSIFLNIFLLGSLGGPSYVRFVFFSALAVLVYVLYSVHASFDAEAEGSFGQKNGGILKESGESDQDPSFKV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G10600		CAT7	cationic amino acid transporte...		Potri.010G241000 [exp]	0	1	PtrCAT10,Pt-CAT6.3
					Potri.002G022100 [exp]	3.46	0.9294
					Potri.018G104500 [exp]	7.93	0.9242
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Potri.006G206400 [exp]	8.66	0.9149
AT1G10630		ATARFA1F	ADP-ribosylation factor A1F (....		Potri.005G142100 [exp]	11.22	0.9109	Pt-ARF1.5
AT5G62200			Embryo-specific protein 3, (AT...		Potri.010G214400 [exp]	11.48	0.9207
AT5G10180		SULTR2;1, AST68	sulfate transporter 2;1, ARABI...		Potri.005G079000 [exp]	14.86	0.9034
AT3G18670			Ankyrin repeat family protein ...		Potri.011G015700 [exp]	15.55	0.9088
AT1G02170		AtMCP1b, ATMC1,...	LSD ONE LIKE 3, ARABIDOPSIS TH...		Potri.017G053000 [exp]	15.74	0.9104
					Potri.008G114101 [exp]	17.32	0.9003
AT3G62950			Thioredoxin superfamily protei...		Potri.002G208500 [exp]	19.59	0.9136

Compare expression of checked genes

Potri.010G241000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.