Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14470 374 / 2e-111 NB-ARC domain-containing disease resistance protein (.1) AT3G14460 361 / 2e-104 LRR and NB-ARC domains-containing disease resistance protein (.1) AT3G50950 209 / 8e-56 ZAR1 HOPZ-ACTIVATED RESISTANCE 1 (.1.2) AT1G50180 197 / 1e-51 NB-ARC domain-containing disease resistance protein (.1) AT3G07040 190 / 2e-49 RPS3, RPM1 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) AT3G46730 189 / 3e-49 NB-ARC domain-containing disease resistance protein (.1) AT5G35450 186 / 3e-48 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G58390 180 / 6e-46 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G53350 174 / 2e-44 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G59124 174 / 2e-44 Disease resistance protein (CC-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G005700 [exp] 867 / 0 AT3G14460 212 / 4e-58 LRR and NB-ARC domains-containing disease resistance protein (.1) Potri.017G121700 [exp] 635 / 0 AT3G14470 461 / 2e-144 NB-ARC domain-containing disease resistance protein (.1) Potri.017G127200 [exp] 619 / 0 AT3G14470 404 / 4e-123 NB-ARC domain-containing disease resistance protein (.1) Potri.017G121500 [exp] 613 / 0 AT3G14470 483 / 9e-153 NB-ARC domain-containing disease resistance protein (.1) Potri.001G025400 [exp] 584 / 0 AT3G14470 558 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.017G128000 [exp] 552 / 3e-177 AT3G14470 435 / 6e-135 NB-ARC domain-containing disease resistance protein (.1) Potri.017G127800 [exp] 533 / 8e-170 AT3G14470 437 / 1e-135 NB-ARC domain-containing disease resistance protein (.1) Potri.017G137700 [exp] 520 / 3e-165 AT3G14470 437 / 7e-136 NB-ARC domain-containing disease resistance protein (.1) Potri.009G081000 [exp] 510 / 2e-164 AT3G14470 257 / 2e-72 NB-ARC domain-containing disease resistance protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039540 [exp] 479 / 6e-149 AT3G14470 727 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10005321 [exp] 454 / 1e-137 AT3G14460 607 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10039509 [exp] 435 / 4e-131 AT3G14460 613 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10024173 [exp] 412 / 3e-123 AT3G14460 681 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10026109 [exp] 409 / 1e-121 AT3G14470 598 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10042117 [exp] 391 / 2e-117 AT3G14470 354 / 2e-105 NB-ARC domain-containing disease resistance protein (.1) Lus10026132 [exp] 391 / 4e-114 AT3G14460 594 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10005218 [exp] 385 / 4e-114 AT3G14470 379 / 2e-113 NB-ARC domain-containing disease resistance protein (.1) Lus10007261 [exp] 379 / 6e-111 AT3G14460 654 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10028279 [exp] 363 / 4e-107 AT3G14470 337 / 5e-99 NB-ARC domain-containing disease resistance protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00931 [poplar] [flax] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Potri.011G005900.1 pacid=42780635 polypeptide=Potri.011G005900.1.p locus=Potri.011G005900 ID=Potri.011G005900.1.v4.1 annot-version=v4.1 ATGGATGCTTTAGTTGTATCTCCCCTTTTACAGGCGGTGTTTGATAAGTTGGCTCTTCTGATCATCAGAGAGTTAACGTCTGGAGGAGATTACGAGAAGG AGATGCAAAAGCTGCAGAATAGGCTTCCCATAATTCAAGGTGTGATCGAAGATGCAGAGGAGAGACAACATGGAGATAAGCAGATCAAGATTTGGCTGCA AAAACTTAAAGATGTGGCCTATGATGCTGAAGATTTATTGGACATGATCCATGCTCGAGTTTTGTCCAAACAAGTGCTCGAAAGTGACCGCTTCCCATGG GACATGATCTATGCTCGAGTTTTGTCCAAACAAGTGCTCCAAAGTGACCGCGTCACATATTCTCCGAGTTACGACACGGGAATACTCGGTAAAGGAAAGC TTTGGGCAGAGGAATTTGGTGAGCTGATGAATAGAAAGGTACGGTTGGCTTCTCATACTGTTGAATCAATTCCAAATTATTTCATAAACTTTCGTAAGCT GAGAGAGATTAGGGAGAGATTGGACGATATATCGACGGAGATGGGCGGGTTCCATCTGATGTCGAGACTACCACAGACTGGTAATAGAGAAGGAAGAGAA ACTGGACCTCACATAGTTGAGTCTGAAGTTTGTGGTAGAAAAGAGGATGTGGAAAAGGTTGTGAAAATGTTATTGGCATCTAATACTGATTTCCGAGTGA TTCCTATAATTGGGATTGGAGGTATTGGAAAAACAACCGTTGCTCAATTAGCCTACAATGATGAGAGAGTGAACAAGCATTTTGATTTGAAGATTTGGAT CTCCCTATATGATGATGATTTTAATCCTAGGAAGATTATGAGTCAAGTGTTGGCTTATGTCCAGAAGGGCGAGCATTATTCGATATCCCAGATGGGTTTG CTGCAGTCACAATTGCGGAAAGCATTGCACGGAAAAAGATTTGTCCTTGTGTTGGATGATGTTTGGAATGAGGATCCAGATAAATGGGATAAAGTAAGGA ATCTGCTAGGGGATGGTACAAATGGAAGCAGAGTTATTGTCACCAGCCGGAGCTGGAATGTAGCATCCATAATGAGCACTAGCCCCCCTTACCATTTGGA AGCCCTGTCTGAGGATGATTGCTGGGTGTTGTTCAAGCAGCGGGCCTTTCCTGATGGAGATGAAAATGATTTTCCAAACTTACTACCTGTTGGAAAACAG ATCATTGACAAGTGCAAAGGATTGCCTTTGGCAGCGAAAGTTCTTGGAAGCTTAATGCGGTTCAAACGCGAAGAAAGTGAGTGGTTGCGGGTGCAAGGGA GCGAATTATTGAATCTTGATAGACAGGACAATAAAATAATACAGATCCTAAGGTTGAGTTTCGATCATCTGCCATCACATTTAAAGAGATGTTTTGCTTA TTGTGCGGTTTTTCCGAAGAAATTTGAAATATGCAAGGAAAAGTTGATCCATCAATGGATAGCCGGGGGATTAGTTCAATGCGATCATGATCTGGTGTCC GAACCTGAAGACATCGGCTCCGACTATCTCACTGATCTGCTAAGGATGTCTTTGTTAGAAGTGGTGAGTGGATGTGATGACAGCAGCACAACAAGGATCA AAATGCATGATCTTATTCATGGTCTTGCTATATCAGTTGCTGGTAATGAATTCCTCACTACAGGGAAGACTGAACAACAAGGGACCTTGAAACTGAGCCA CTCCACAAAAGTTAGACATGCTGTGGTTGATTGCTATTCTTCATCCAACCGGGTTCCTGGAGCCTTGTACGGAGCAAAGGGATTGCGTACCCTCAAGTTG TTATCTCTAGGAGATGCATCAGAGAAATCCGTCAGGAATTTAATTTCAAGCTTCAAGTACCTCAGAATTCTGAATTTGAGTGGGTTTGGCATAAAAATTT TGCACAAATCCATTGGTGACTTGACATGCCTGAGATATCTTGATCTGTCCGACACTCCAATTGAAAAATTACCAGCATCTATTTGTAACCTCCAATTGCA GACACTAGATTTATCAAGTTGCTATATTCTTCAAAAGTTACCCAAAAGGACGAGAATGATGACCAGCCTGAGACATCTGAAGATAGAAAACTGTGCAAGA CTTGCTCGCTTGCCAGATTTTATTGGGGCATTGGGAAATCTTCAGACCTTGCCTATATTTATAGTTGGCAAAACATGGGAGGATGGCCTATATGAGTTAC TAAAGCTACAAAATCTTCGAGGTGAACTGAAAATTAAACACCTCGAGAATGTATTATCTGCAAAAAAATTTCCTGGGCCTGGACATCATTATTGTTTCGA AAATATGCAACTTAACTCGTTGGGATTGTCATGGGGAGATGCTGATGCTGATGAACATAAGCTGAGTGGTAACATGAGGGATCCAAGAAGCCAAACAGGA CATCATAGTGTTGAAACTGCAAGGATTTTACTTCATTCAACATTGAAGCCAAACTCCAGGATAAAGAAGTTGTTTGTGAATGGCTATCCAGGAACTGAGT TTCCAGATTGGATGAACGCAGCCGCCCTCTGCAATCTGATACAACTTGAGTTAGCCAACTGCACAAATTGTGAAAGCCTCCCCACGCTTGGGGAATTGCC GCTGCTGAAAGTTCTCCGTATCCAAGGAATGGATTCTGTAGTGAACATCGGCAATGAGTTCTTTGGTGGCATGAGAGCTTTTTCATCATTGACCGAGTTC TCTCTCAAAGATTTTCCTAAGTTGGAAACCTGGAGCACCAATCCTGTGGAAGCATTCACTTGCTTGAACAAATTAACTATCATTAACTGCCCAGTTTTGA TCACCATGCCATGGTTTCCATCTCTTCAACATGTAGAGATCAGAAACTGCCACCCAGTGATGCTACGGTCTGTAGCACAGCTACGATCAATCTCCACTCT CATTATTGGCAATTTTCCGGAGTTACTCTATATACCAAAAGCACTCATAGAAAACAACTTGCTTCTCTTGTCTTTGACAATTTCCTTCTGTCCCAAACTT CGTTCATTGCCTGCAAATGTTGGACAACTCCAGAACTTGAAGTTTCTAAGAATAGGCTGGTTTCAGGAGCTACACTCTTTGCCACATGGTTTGACAAATC TGACTTCTCTGGAGTCCTTGGAGATTATCGAGTGTCCTAATTTAGTCTCCCTGCCAGAGGAAAGCCTAGAAGGATTGAGTTCGCTGCGATCACTCTCCAT TGAGAATTGTCACAGCTTGACTTCTCTGCCGAGTCGGATGCAACATGCCACAGCCCTTGAACGCCTAACTATTATGTATTGTTCAAATCTGGTGTCTTTG CCAAATGGCTTGCAACATCTCTCTGCACTTAAAAGTCTGAGCATTTTAAGCTGCACAGGGCTGGCATCTCTGCCCGAGGGACTACAATTTATTACAACAT TGCAAAACCTGGAAATTCACGACTGTCCAGGAGTCATGGAATTACCAGCATGGGTGGAGAACCTGGTTTCACTTCGATCTTTGACAATCTCAGATTGCCA AAACATCAAGTCTTTCCCACAAGGTCTCCAACGACTCCGCGCACTCCAGCATTTGTCCATCAGAGGCTGTCCTGAACTCGAAAAACGATGTCAGAGAGGG AACGGAGTGGATTGGCATAAAATATCTCACACACCGTATATTTATGTTGGATTATCAACATTGCAGCAGAGACGTGACACTGCTAGCAGCTCTTCAACTT CATAG
AA sequence Show only first row Show all	>Potri.011G005900.1 pacid=42780635 polypeptide=Potri.011G005900.1.p locus=Potri.011G005900 ID=Potri.011G005900.1.v4.1 annot-version=v4.1 MDALVVSPLLQAVFDKLALLIIRELTSGGDYEKEMQKLQNRLPIIQGVIEDAEERQHGDKQIKIWLQKLKDVAYDAEDLLDMIHARVLSKQVLESDRFPW DMIYARVLSKQVLQSDRVTYSPSYDTGILGKGKLWAEEFGELMNRKVRLASHTVESIPNYFINFRKLREIRERLDDISTEMGGFHLMSRLPQTGNREGRE TGPHIVESEVCGRKEDVEKVVKMLLASNTDFRVIPIIGIGGIGKTTVAQLAYNDERVNKHFDLKIWISLYDDDFNPRKIMSQVLAYVQKGEHYSISQMGL LQSQLRKALHGKRFVLVLDDVWNEDPDKWDKVRNLLGDGTNGSRVIVTSRSWNVASIMSTSPPYHLEALSEDDCWVLFKQRAFPDGDENDFPNLLPVGKQ IIDKCKGLPLAAKVLGSLMRFKREESEWLRVQGSELLNLDRQDNKIIQILRLSFDHLPSHLKRCFAYCAVFPKKFEICKEKLIHQWIAGGLVQCDHDLVS EPEDIGSDYLTDLLRMSLLEVVSGCDDSSTTRIKMHDLIHGLAISVAGNEFLTTGKTEQQGTLKLSHSTKVRHAVVDCYSSSNRVPGALYGAKGLRTLKL LSLGDASEKSVRNLISSFKYLRILNLSGFGIKILHKSIGDLTCLRYLDLSDTPIEKLPASICNLQLQTLDLSSCYILQKLPKRTRMMTSLRHLKIENCAR LARLPDFIGALGNLQTLPIFIVGKTWEDGLYELLKLQNLRGELKIKHLENVLSAKKFPGPGHHYCFENMQLNSLGLSWGDADADEHKLSGNMRDPRSQTG HHSVETARILLHSTLKPNSRIKKLFVNGYPGTEFPDWMNAAALCNLIQLELANCTNCESLPTLGELPLLKVLRIQGMDSVVNIGNEFFGGMRAFSSLTEF SLKDFPKLETWSTNPVEAFTCLNKLTIINCPVLITMPWFPSLQHVEIRNCHPVMLRSVAQLRSISTLIIGNFPELLYIPKALIENNLLLLSLTISFCPKL RSLPANVGQLQNLKFLRIGWFQELHSLPHGLTNLTSLESLEIIECPNLVSLPEESLEGLSSLRSLSIENCHSLTSLPSRMQHATALERLTIMYCSNLVSL PNGLQHLSALKSLSILSCTGLASLPEGLQFITTLQNLEIHDCPGVMELPAWVENLVSLRSLTISDCQNIKSFPQGLQRLRALQHLSIRGCPELEKRCQRG NGVDWHKISHTPYIYVGLSTLQQRRDTASSSSTS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G14470			NB-ARC domain-containing disea...		Potri.011G005900 [exp]	0	1
AT1G78290		SRK2C, SNRK2-8,...	SNF1-RELATED PROTEIN KINASE 2C...		Potri.002G099700 [exp]	1.73	0.8847
AT3G62470			Pentatricopeptide repeat (PPR)...		Potri.014G121400 [exp]	3.87	0.8926
AT5G22000		RHF2A, CIC7E11	RING-H2 group F2A (.1.2.3)		Potri.001G213800 [exp]	4.00	0.8863	RHF2.3
AT1G36990			unknown protein		Potri.002G089100 [exp]	4.89	0.8752
AT2G33630			NAD(P)-binding Rossmann-fold s...		Potri.002G005201 [exp]	7.41	0.8590
AT1G66920			Protein kinase superfamily pro...		Potri.015G018600 [exp]	10.00	0.8643
AT2G21090			Pentatricopeptide repeat (PPR-...		Potri.004G171801 [exp]	16.88	0.8470
AT3G14470			NB-ARC domain-containing disea...		Potri.001G379700 [exp]	16.91	0.8528
AT5G27650			Tudor/PWWP/MBT superfamily pro...		Potri.005G026800 [exp]	18.13	0.8683
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Potri.013G104100 [exp]	18.33	0.8455

Compare expression of checked genes

Potri.011G005900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.