Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G36930 491 / 5e-154 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT1G27170 442 / 2e-134 transmembrane receptors;ATP binding (.1.2) AT1G27180 397 / 3e-117 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT2G16870 350 / 6e-103 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G17680 350 / 1e-101 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G18360 341 / 3e-101 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G38340 340 / 1e-99 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G41540 337 / 1e-98 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G49140 335 / 2e-98 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT1G63880 331 / 1e-96 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G009251 [exp] 2000 / 0 AT5G36930 508 / 1e-160 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.011G012000 [exp] 1755 / 0 AT5G36930 489 / 2e-153 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.011G015400 [exp] 1754 / 0 AT5G36930 438 / 1e-134 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.011G008292 [exp] 1753 / 0 AT5G36930 454 / 2e-140 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.011G012475 [exp] 1744 / 0 AT5G36930 431 / 1e-131 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.011G008868 [exp] 1725 / 0 AT5G36930 471 / 1e-146 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.006G270000 [exp] 1721 / 0 AT5G36930 496 / 1e-155 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.011G013900 [exp] 1712 / 0 AT5G36930 441 / 1e-135 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.011G008612 [exp] 1708 / 0 AT5G36930 467 / 6e-145 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005171 [exp] 743 / 0 AT1G27170 576 / 0.0 transmembrane receptors;ATP binding (.1.2) Lus10011741 [exp] 664 / 0 AT5G36930 540 / 4e-172 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10033825 [exp] 534 / 5e-174 AT5G36930 400 / 3e-123 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10039850 [exp] 527 / 3e-167 AT5G36930 573 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10018616 [exp] 526 / 9e-166 AT5G36930 578 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10030839 [exp] 421 / 8e-128 AT4G12010 552 / 7e-176 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10011104 [exp] 413 / 5e-125 AT5G17680 574 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10041060 [exp] 401 / 5e-120 AT5G17680 641 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10029722 [exp] 392 / 3e-118 AT5G17680 608 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10019708 [exp] 389 / 6e-114 AT5G17680 495 / 1e-150 disease resistance protein (TIR-NBS-LRR class), putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00931 [poplar] [flax] NB-ARC NB-ARC domain CL0173 [poplar] [flax] STIR PF13676 [poplar] [flax] TIR_2 TIR domain
Representative CDS sequence Show only first row Show all	>Potri.011G008164.1 pacid=42780855 polypeptide=Potri.011G008164.1.p locus=Potri.011G008164 ID=Potri.011G008164.1.v4.1 annot-version=v4.1 ATGGCTGCTGCGAAATATCAAGCATCCTCATCTTCACGGTTTTCTCATTGTAAATATCGAGTGTTCTTGAGTTTCAGAGGCGAAGACACTCGCAAGAATT TTACTGATCACCTCTACACAGCCCTTGTTCAAGCAGGGATTCACACATTTAGAGATGATGATGAAATTGGCAGAGGAGAGAATATCGAATCGGAGCTCCA GAAGGCAATACAACAATCAAAAATTGCGATAATCGTATTCTCCAAAGACTATGCTTCTTCGAGGTGGTGCCTTGATGAAATTGTAATGATCATGGAACGC AGGAGGACCGCTGACTGCAGAGTTTTGCCGGTATTCTATGATGTGGATCCATCCCAAGTCAGAAAGCAAACAGGGAGCTTCGCCGCAGCATTTGTTGAGC ATGAAAAGCACTTCAAGGAGGAGATGGAGAGGGTGAACGGGTGGAGGATTGCTTTGAAGGAAGTGGCCGATTTAGCTGGAATGGTTTTAGGAGATGGATA CGAGGCACTGCTTGTCCAATGTATTGTGGCGAAGGTCTCAAAGAACTTGGATCGAAAAATATTTCATGTACCCCTTCATTTCATTGGAAGAGATCCTCTA GTAAATTATATCAACTCATGGTTGCAAGATGAGTCCCATGATGTTGCCACTGCTATGCTCTACGGAATTGGTGGAGTTGGGAAGACAGCTATAGCAAAGA GTGTTTTTAATCAGAACTTTCGTAAATTTGAATGCAGGAGCTATCTATCAAATGTTAGAGAAATCTCAAAAGAATCCAAAGGTGTAGTTTGCCTACAGAG GCAACTTCTTTCTGATATCCTAAACCAAACTGTTGATGAGATACATGATGTTGATGAAGGAATTTTAAAGATTAAGGATGCCTTGTGTTGCAGAAGAACT CTTATTGTTCTTGATGATGTGGACAATAGGGACCAATTCAATGCAATCATAGGCATGCAAGAATGGCTTTGTCAAGGATGTAAAATCATTGTAACAACTA GAAATAAGGGTCTAATTGCAGCTCAAGATGAGTTTGTCAAGTGCAAAGTTGAACCTCTAGACAACAAAAAATCACTCGAGCTTTTCAGTTGGCATGCCTT TGGACAAGCTTACCCTGTTGAAGGTTTTGTGGAGGACTCTTGGAGAATAGTGCATCATTGTAATGGACTTCCATTAGCCCTTCGTGTTATTGGTTCTTCA TTGTCAGGGAAAGGAAGAAAATTATGGGGAAGCGCATTACAGGAATTGGCAGTGATTCCTAATTGTGAAGTTCAAAATGTTCTTGAAATAAGTTACCACT CTCTAGATGATGATTATCAAAAAAACATATTCCTTGATATTGCTTGTTTCTTCAATGGAATGGATGTGGATTATGCAGTTACGATACTAGATGGGCTTGG TATAGGTGCAAGATTTAGGATTGACAAACTTATCGATAGATGCCTTGTTGAAATCAACAATGATAAAAGGTTGTGGATGCATCAGCTCGTAAGAGATATG GGAAGGGAAATTGCTCGACAAGAATCACCCAAATGTCAAAGAACATGGCATCACGAGGATGCTTTTAGAGTATTGAATGGAACTACCGATGCTGAAAAAT TGTGTGGCCTTACCATTGATATGCATGCATTAATGGAAGATGATTATGCAGAAGTTGCTTGTACCAGTTCAATGGTTCGCAGCAAGAGTCGCAGGCTTAA TTTCTCTCTACAATGGTTTTCTGACTTTTTTTATGGGGGAAAATTACAAACTGACCAAACAAGTTTGTTTCTCATCCTCAGCACGGATGCTTTTAGAAAG ATGTCAGATGTAAAATTTCTCCAACTAAACTACACTAAGTTTCATGGAAGTTTTGAGCACTTCCCTAAGAATTTGATATGGTTATGTTGGCATGGATTTT CTTTGAGATCCATACCAAATCACGTATGCTTGGAGAAGCTGGTAGTTCTTGATCTATCCAGAAGCTGTCTAGTTGATGCTTGGAAAGGCAAACCGTTTCT TCCAAAATTAAAAATTCTTGATCTCCGTCACTCTCATGATCTCATTAGAACCCCAGACTTCTCAGGTCTCCTAGGCCTTGAAAAGTTAATACTCGAAGAC TGCATCCGTTTGGTTCAAATTCACGAATCTATTGGTGATTTACAAAGACTGTTGATCTTAAATCTAAGAAATTGTATAAGTCTTATGGAGCTTCCAGAAG AAATGTGTAGATTGAATTCACTTCAAGAGCTGGTTTTAGATTGTTGCTCAAATCTTGACAGGCTGATGAATATGGTGTTAGAGCATCATCAGGAGCGCAG CTTGCTTCAAAGTGATGGAATTGTTGCAAGTACATCATACATTACATCTCTTCCATTGAAGCTATTGTTTCCCTCTAGGTTTTCAGCGAGGAAAATGTTG AGATTTACCTCGTTTTCACTGCCACGCTCCTTGGAGAGACTAGATTTAAGTGGAACTCCAATTCGTTTTCTTCCAGAAAGCATCAAGGATCTTGGTCTAC TCAGAGGCATATATTTAAGAAATTGCAAAATGCTTGAGGCACTCCCAGAGCTTCCATCCCATTTGATTTTGTTAGATGTGTCCTTTTGCAATTCACTGCA AAGACTTGCAAATCTAGTTGCTAACACTAAAGCAGATGGTTGTGATCAATTAGTCGAGTTCCAAGATCGGATGAAGCAAGAATTAATCCAAAAGTTTGAC TCACACATGTTCAGAATTATGGAAACGGTTAGTGCTCAAATACAGCCATCGAGATTTCAGATAGCATTTATAGATGGCACATTCAGCGTTGTCATATATG TATTTGATGAAGATGAGAAGTCGAGGTGGTTTTATGAGGATAAATGGCTAATTCAAAATGAGTTTGTAGATAACTTTTCATTCAAAATATCCTCACCTCC TCCTGCGCACCGGATATGTGGCTTTACTCTGTTCACAAGGTTTTGTATGACGTCAGAGTACACTCTCTTAGATCCTTTTTATATTATAATCAGAAACAAT ACCAGTGGTCGATACTTGCGTTGTCAAGCCTATCTCCTCCCTGTGAGTTACAAGCATGGTGTTCGTGAATTCCAATCGTTTATGCACAGGAAATTAGGGG GCGATGATCCTACATTTGATAATGGTGATGAAGTGAGTATTTCAGTGCGTCGAAAAAAACCAGCTATCCAAATAAGGACGATTGGAGTACAATGGTTGCA TGAAGAGGAAGGAAAGGATGATGACATCCAATCAAAGGATGAAGTTATCAATGCCCACAACAGTAGCGATGATGCAGCACACGTACCCAAAGTAGAAATA GCTTCTCATTTTTTTAGAAATTATTATTGTGCTGCTCACCGTAATGAAACTTTCGGCGATTTCGCTTGGCTTTTTGCGAAGACGGGTCTAGAATTTGTAT TATATTATTATTAG
AA sequence Show only first row Show all	>Potri.011G008164.1 pacid=42780855 polypeptide=Potri.011G008164.1.p locus=Potri.011G008164 ID=Potri.011G008164.1.v4.1 annot-version=v4.1 MAAAKYQASSSSRFSHCKYRVFLSFRGEDTRKNFTDHLYTALVQAGIHTFRDDDEIGRGENIESELQKAIQQSKIAIIVFSKDYASSRWCLDEIVMIMER RRTADCRVLPVFYDVDPSQVRKQTGSFAAAFVEHEKHFKEEMERVNGWRIALKEVADLAGMVLGDGYEALLVQCIVAKVSKNLDRKIFHVPLHFIGRDPL VNYINSWLQDESHDVATAMLYGIGGVGKTAIAKSVFNQNFRKFECRSYLSNVREISKESKGVVCLQRQLLSDILNQTVDEIHDVDEGILKIKDALCCRRT LIVLDDVDNRDQFNAIIGMQEWLCQGCKIIVTTRNKGLIAAQDEFVKCKVEPLDNKKSLELFSWHAFGQAYPVEGFVEDSWRIVHHCNGLPLALRVIGSS LSGKGRKLWGSALQELAVIPNCEVQNVLEISYHSLDDDYQKNIFLDIACFFNGMDVDYAVTILDGLGIGARFRIDKLIDRCLVEINNDKRLWMHQLVRDM GREIARQESPKCQRTWHHEDAFRVLNGTTDAEKLCGLTIDMHALMEDDYAEVACTSSMVRSKSRRLNFSLQWFSDFFYGGKLQTDQTSLFLILSTDAFRK MSDVKFLQLNYTKFHGSFEHFPKNLIWLCWHGFSLRSIPNHVCLEKLVVLDLSRSCLVDAWKGKPFLPKLKILDLRHSHDLIRTPDFSGLLGLEKLILED CIRLVQIHESIGDLQRLLILNLRNCISLMELPEEMCRLNSLQELVLDCCSNLDRLMNMVLEHHQERSLLQSDGIVASTSYITSLPLKLLFPSRFSARKML RFTSFSLPRSLERLDLSGTPIRFLPESIKDLGLLRGIYLRNCKMLEALPELPSHLILLDVSFCNSLQRLANLVANTKADGCDQLVEFQDRMKQELIQKFD SHMFRIMETVSAQIQPSRFQIAFIDGTFSVVIYVFDEDEKSRWFYEDKWLIQNEFVDNFSFKISSPPPAHRICGFTLFTRFCMTSEYTLLDPFYIIIRNN TSGRYLRCQAYLLPVSYKHGVREFQSFMHRKLGGDDPTFDNGDEVSISVRRKKPAIQIRTIGVQWLHEEEGKDDDIQSKDEVINAHNSSDDAAHVPKVEI ASHFFRNYYCAAHRNETFGDFAWLFAKTGLEFVLYYY

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G36930			Disease resistance protein (TI...		Potri.011G008164 [exp]	0	1
AT4G27220			NB-ARC domain-containing disea...		Potri.019G020102 [exp]	2.00	0.9802
AT5G36930			Disease resistance protein (TI...		Potri.011G009251 [exp]	3.46	0.9739
AT5G36930			Disease resistance protein (TI...		Potri.011G014301 [exp]	6.92	0.9686
AT1G27170			transmembrane receptors;ATP bi...		Potri.006G282100 [exp]	9.00	0.9402
AT1G53430			Leucine-rich repeat transmembr...		Potri.010G155800 [exp]	9.05	0.9113
AT5G36930			Disease resistance protein (TI...		Potri.011G015050 [exp]	10.90	0.9537
AT5G17680			disease resistance protein (TI...		Potri.019G070651 [exp]	11.22	0.9468
AT5G36930			Disease resistance protein (TI...		Potri.006G282300 [exp]	12.64	0.9546
AT5G14930		GENE101, SAG101	senescence-associated gene 101...		Potri.001G291033 [exp]	13.15	0.8865
AT5G17680			disease resistance protein (TI...		Potri.019G070565 [exp]	13.41	0.9382

Compare expression of checked genes

Potri.011G008164 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.