Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G36930 468 / 2e-148 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT1G27170 410 / 4e-125 transmembrane receptors;ATP binding (.1.2) AT1G27180 367 / 8e-109 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G41750 347 / 3e-104 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT1G72840 337 / 1e-100 Disease resistance protein (TIR-NBS-LRR class) (.1), Disease resistance protein (TIR-NBS-LRR class) (.2) AT5G17680 340 / 2e-100 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G41550 335 / 1e-99 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G41540 332 / 8e-99 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT1G63880 330 / 3e-98 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G18360 327 / 4e-98 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G008292 [exp] 1597 / 0 AT5G36930 454 / 2e-140 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.011G008868 [exp] 1596 / 0 AT5G36930 471 / 1e-146 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.011G008612 [exp] 1571 / 0 AT5G36930 467 / 6e-145 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.011G015400 [exp] 1557 / 0 AT5G36930 438 / 1e-134 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.006G270000 [exp] 1538 / 0 AT5G36930 496 / 1e-155 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.011G012475 [exp] 1535 / 0 AT5G36930 431 / 1e-131 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.011G013900 [exp] 1525 / 0 AT5G36930 441 / 1e-135 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.011G011600 [exp] 1521 / 0 AT5G36930 492 / 1e-154 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.006G282600 [exp] 1521 / 0 AT5G36930 466 / 1e-144 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005171 [exp] 685 / 0 AT1G27170 576 / 0.0 transmembrane receptors;ATP binding (.1.2) Lus10011741 [exp] 630 / 0 AT5G36930 540 / 4e-172 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10033825 [exp] 516 / 4e-170 AT5G36930 400 / 3e-123 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10039850 [exp] 525 / 3e-169 AT5G36930 573 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10018616 [exp] 519 / 5e-166 AT5G36930 578 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10030839 [exp] 419 / 1e-129 AT4G12010 552 / 7e-176 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10011104 [exp] 403 / 1e-123 AT5G17680 574 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10029722 [exp] 387 / 8e-119 AT5G17680 608 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10041060 [exp] 387 / 2e-117 AT5G17680 641 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10003749 [exp] 375 / 6e-113 AT5G17680 517 / 5e-161 disease resistance protein (TIR-NBS-LRR class), putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00931 [poplar] [flax] NB-ARC NB-ARC domain CL0173 [poplar] [flax] STIR PF13676 [poplar] [flax] TIR_2 TIR domain
Representative CDS sequence Show only first row Show all	>Potri.011G008228.1 pacid=42781015 polypeptide=Potri.011G008228.1.p locus=Potri.011G008228 ID=Potri.011G008228.1.v4.1 annot-version=v4.1 ATGGCTGCTGGGAAGTATCAAGAATCCTACTCTTCACGGTTTTCTAATTGTAAATATCAAGTGTTCTTGAGTTTTAGAGGTGAAGACACCCGCAAGAACT TTACCGATCACCTCTACATGGCCCTGGTTCAAGCAGGGATTCACACATTTAGAGATGATGATGAAATTCGGAGAGGAGAGAATATAGATTTCGAGCTCCA GAAGGCAATACAACAATCAAAAATATCGATAATCGTGTTCTCCAAAGACTATGCTTCGTCGAGATGGTGCCTCGATGAACTTGTAATGATCATGGAACGT AAGAGGAATGATGACTGCATAGTTTTGCCAGTATTCTATGATGTGGATCCATCCCAAGTCGGACGTCAAACAGGGAGCTTCGCTGCAGCATTTGTGAAAC ATGAAAAGAGCTTCAACGAGGAGAAGGAGCGGGTGAGTGGGTGGAGGATTGCTTTGAAAGAAGTTACAGATTTAGCTGGAATGGTTTTAGGAGATGGGTA CGAGGCACAGTTTGTCCAATCTATTGTGGAGAAGGTCTCAAAGAAATTGGATCAAAAAATGTTTCATTTACCCCTTCATTTCATTGGAAGAGATCCTCTA GTAAATTATATCAACTCATGGTTGCAAGATGGGTCCCATGATGCTGCCATTGCTATACTCTATGGAATTGGTGGAGTTGGGAAGACAACCATAGCAAAGA GTGTTTTTAATCAGAATATTCATAAATTTGAAGGAAAGAGTTTCCTATCAAATTTTAGATCAAAGGATATAGTTTGCCTACAAAGGCAACTTCTTTCCGA CATCCTAAAAAAGATTGTTGATGAGATAAATGATGAAGATGAAGGAATTCTGAAGATTAAGGATGCATTGTGTTGCAGAAAAACTCTTATTGTTCTAGAT GATGTGGACAAAAGGGACCAATTTAATAAAATCATTGGCATGCAAAACTGGCTTTGTAAGGGAAGTAAAATCATTGTAACAACCAGAAATAAGGGTCTGT TTTCAGCTAATGATATTGAGTGGGTCCGGTGCAAAGTTGAACCGCTAGATGATGAAAAATCACTTGAGATTTTCAGTTGGAATGCTTTTGGACAAGCTGA CCCTGTTGATGGTTTTGTAGAAGACTCTTGGAGAATAATACGTCATTGTAATGGACTTCCATTAGCTCTTGGAGTTATTGGCTCTTCATTGTCCGGAAAA GGAAGAGAAATATGGGAAAGCGCATTACAACAAATGGAAGTGATTCCTAATTTTGAAGTTCAAAAGGTTCTTCGAATAAGTTACGACTTTCTTGATGGTG ATTATCCGAAGAACTTATTCCTTGATATCGCATGTTTCTTTAATGGAATGGATGTGGATGATGTAGTTAGGATACTGGACGGGCTCGATAAAGGTGCAAG ATTTGGGATTGACAATCTCATCGATATATGCCTTGTTGAAATCAACACTAGTGATCAAAGGTTGTGGATGCATCAACTAGTAAGAGATATGGGTAGGGAA ATTGCTCGTCAAGAATCACCCAAATGTCAAAGAATATGGCGTCACGAGGATGCTTTTACAGTTTTGAAAGGAACTACTGATGCTGAAAAATTGCGTGGCC TTACCATTGATATGCATGCATTAATGGAAGATCATTATGCAGAAGTTGTCGGTACTGATTCAATGGTTTGTCGCAAGCGCCGCATGCTTAACTTCTTTCA ACAATGGCTTTCTGATTTTTTCGATGGGGGAAAATTACAAACTGGCGAAACAAGTTTGTTTCCTGTCCTCAGCAAGGATGCTTTTAAAAAGATGCCAGTT GTAAAATTTCTCCAACTAAATTACACGAAGTTCTATGGAAGTTTTGAACACTTCCCTAAGAATTTGATATGGTTATGTTGGCATGGATTCTCTTCGAGAT CCATACCAAATCATGGATGCTTGGAGAAGCTAGTGGTTCTTGATCTATCCAGAAGCAATCTAATTGATGCTTGGAAAGGCAAACTGTTTCTTCCAAAATT GAAAGTTCTTGATCTCCGTCACTCTCTTGATCTTATTAGAACCCCAAACTTCTTGGGTCTCCCAGCCCTTGAAAAGCTAATACTTGAAGACTGCATCCGT TTGGTTCAAATTCACGAATCTATTGGTGATTTACAAAGATTGTTGATCTTAAATCTAAGAAATTGTACAAGTCTTATGGAGCTTCCAGAAGAAATGAGTA GATTGAATTCACTTCAAGAGCTGGTTGTAGATGGTTGCTCAAATCTTGACAGCCTGAATATGGCGTTAGAGCATCATCAGGGGCATAGCTTGCTTCAAAG CGATGGAATTGTTGCAAGTACATCATACATTACATCTCTTCCATTGAAGCTATTCTTTCCCTCTAGGTTTTCAGCTAGGAAAATGTTGAGATTTACCTTG TTTTCACTGCCACGCTTCTTGGAGAGACTAGATTTAAGTGGAACTCCAATTCGTTTTCTTCCAAAAAGCATCAAGGATCTTGGTCTACTCAGAGGCCTAT ATTTAAGAAATTGCAAAATGCTTGAGGCACTCCCAGAGCTTCCATCCCATTTGATTTTGTTAGATGTGTCCTTTTGCTATTCAGTGCAAAGAGTTTCAAA TCTAACCGGTGGGACTAGTGCAGATGGTTGTGATCAATTAGTCGAGTTCCAAGATTGA
AA sequence Show only first row Show all	>Potri.011G008228.1 pacid=42781015 polypeptide=Potri.011G008228.1.p locus=Potri.011G008228 ID=Potri.011G008228.1.v4.1 annot-version=v4.1 MAAGKYQESYSSRFSNCKYQVFLSFRGEDTRKNFTDHLYMALVQAGIHTFRDDDEIRRGENIDFELQKAIQQSKISIIVFSKDYASSRWCLDELVMIMER KRNDDCIVLPVFYDVDPSQVGRQTGSFAAAFVKHEKSFNEEKERVSGWRIALKEVTDLAGMVLGDGYEAQFVQSIVEKVSKKLDQKMFHLPLHFIGRDPL VNYINSWLQDGSHDAAIAILYGIGGVGKTTIAKSVFNQNIHKFEGKSFLSNFRSKDIVCLQRQLLSDILKKIVDEINDEDEGILKIKDALCCRKTLIVLD DVDKRDQFNKIIGMQNWLCKGSKIIVTTRNKGLFSANDIEWVRCKVEPLDDEKSLEIFSWNAFGQADPVDGFVEDSWRIIRHCNGLPLALGVIGSSLSGK GREIWESALQQMEVIPNFEVQKVLRISYDFLDGDYPKNLFLDIACFFNGMDVDDVVRILDGLDKGARFGIDNLIDICLVEINTSDQRLWMHQLVRDMGRE IARQESPKCQRIWRHEDAFTVLKGTTDAEKLRGLTIDMHALMEDHYAEVVGTDSMVCRKRRMLNFFQQWLSDFFDGGKLQTGETSLFPVLSKDAFKKMPV VKFLQLNYTKFYGSFEHFPKNLIWLCWHGFSSRSIPNHGCLEKLVVLDLSRSNLIDAWKGKLFLPKLKVLDLRHSLDLIRTPNFLGLPALEKLILEDCIR LVQIHESIGDLQRLLILNLRNCTSLMELPEEMSRLNSLQELVVDGCSNLDSLNMALEHHQGHSLLQSDGIVASTSYITSLPLKLFFPSRFSARKMLRFTL FSLPRFLERLDLSGTPIRFLPKSIKDLGLLRGLYLRNCKMLEALPELPSHLILLDVSFCYSVQRVSNLTGGTSADGCDQLVEFQD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G36930			Disease resistance protein (TI...		Potri.011G008228 [exp]	0	1
AT3G42170			BED zinc finger ;hAT family di...		Potri.017G019466 [exp]	1.73	0.9739
AT5G36930			Disease resistance protein (TI...		Potri.011G015400 [exp]	2.64	0.9544
AT5G36930			Disease resistance protein (TI...		Potri.011G009251 [exp]	5.47	0.9604
AT4G27220			NB-ARC domain-containing disea...		Potri.019G023300 [exp]	5.65	0.9502
AT3G14470			NB-ARC domain-containing disea...		Potri.012G121801 [exp]	8.00	0.9299
AT4G14210		PDE226, PDS3	PIGMENT DEFECTIVE 226, phytoen...		Potri.002G235200 [exp]	8.66	0.9226	PDS.2
AT5G17680			disease resistance protein (TI...		Potri.019G070651 [exp]	10.95	0.9429
AT2G25770			Polyketide cyclase/dehydrase a...		Potri.018G046100 [exp]	10.95	0.9249
					Potri.011G014701 [exp]	12.72	0.8943
AT5G44870		TTR1, LAZ5	tolerance to Tobacco ringspot ...		Potri.006G282700 [exp]	16.00	0.9142

Compare expression of checked genes

Potri.011G008228 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.