Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G36930 265 / 1e-74 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT1G27180 215 / 1e-57 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT1G27170 206 / 1e-54 transmembrane receptors;ATP binding (.1.2) AT5G38340 194 / 3e-51 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT2G16870 185 / 5e-48 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G17680 182 / 6e-47 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT1G63880 180 / 2e-46 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G18360 179 / 2e-46 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G12010 175 / 9e-45 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G11250 175 / 1e-44 Disease resistance protein (TIR-NBS-LRR class) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G008164 [exp] 1028 / 0 AT5G36930 491 / 3e-154 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.011G013900 [exp] 995 / 0 AT5G36930 441 / 1e-135 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.011G009251 [exp] 993 / 0 AT5G36930 508 / 1e-160 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.011G012475 [exp] 991 / 0 AT5G36930 431 / 1e-131 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.006G270000 [exp] 991 / 0 AT5G36930 496 / 1e-155 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.006G269900 [exp] 990 / 0 AT5G36930 284 / 2e-81 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.011G008292 [exp] 989 / 0 AT5G36930 454 / 2e-140 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.011G013450 [exp] 986 / 0 AT5G36930 422 / 2e-129 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.011G015400 [exp] 986 / 0 AT5G36930 438 / 1e-134 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005171 [exp] 404 / 1e-124 AT1G27170 576 / 0.0 transmembrane receptors;ATP binding (.1.2) Lus10011741 [exp] 363 / 2e-109 AT5G36930 540 / 4e-172 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10033825 [exp] 337 / 2e-102 AT5G36930 400 / 3e-123 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10039850 [exp] 269 / 1e-75 AT5G36930 573 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10030839 [exp] 248 / 2e-68 AT4G12010 552 / 7e-176 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10018616 [exp] 243 / 1e-66 AT5G36930 578 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10011104 [exp] 220 / 3e-59 AT5G17680 574 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10029722 [exp] 216 / 3e-58 AT5G17680 608 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10003749 [exp] 207 / 4e-55 AT5G17680 517 / 5e-161 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10041060 [exp] 205 / 2e-54 AT5G17680 641 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00931 [poplar] [flax] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Potri.011G008420.1 pacid=42780500 polypeptide=Potri.011G008420.1.p locus=Potri.011G008420 ID=Potri.011G008420.1.v4.1 annot-version=v4.1 ATGCAAAATTGGCTTTGTAAAGGAAGTAAAATCATTGTAACGACCAGAAATAAGGGTCTGCTTTCAGCTAATGATAAGTGGGTTAAGTGCAAAGTTGAAC CTCTAGATAACGGAAAATCACTTGAGCTTTTCAGTTGGCATGCCTTTGGACAAGCTTACCCTGTTGAAGGTTTTGTAGAGGACTCTTGGAAAATAGTGAA TCATTGTAATGGACTTCCATTGGCCCTTCGTGTTATTGGTTCTTCATTATCTGGTAAAAGTCGAGAAGTATGGGAAAGTGCATTGCATGAAATGGAAGTG ATTCCAAATTGTGAAGTTCAAAAGATTCTTCGAATAAGTTACGACTCTCTCGATGATGAATACCAGAAGAACTTATTCCTTGATATTGCTTGTTTCTTCA ATGGAATGGATTACAATTATGCTGTTAGGATACTAGATGGGCTCGGTATAGGTGCAAGATTCAGGATTGACAATCTCATCGATAGATGTCTTGTAGAAAT TGTTGAAATCAACAGTGATAAAAGGTTGTGGATGCATCAACTCGTAAGAGATATGGGAAGGGAAATTTCTCGTCAAGAATCACCCCAGTGTCAAAGAATA TGGCATCACATGGAAGCTTTTACAGTTTTGAAAGAAACAAGTGATGCTGAAAAATTGCGTGGCCTTACCATTGATATGCATGCATTAATGGAAGATAATT GTACCAAAGCTATCTGTGGTGATTCAATGGTTCGCCACAAGCATAACTTCTTTCAACATTATCGTCTTCCTACGTTCCCCTCTCGAGAATGGCTTTCTGA CCTTTTCTTCGGGGAACAAGTACAAAGTGGTCAAGCAAGTTTGTTACCCGTCCTCAGCACGGATGCTTTGAGAAAGATGCAAAATGTAAAATTTCTCCAA CTAAATTACCTGAAGTTCCATGGAAGTTATGAACACTTCCCTAAGAATTTGGTATGGTTATCCTGGCATGGATTCTCTTTGAGATCCATACCAAACCAAT TATGCTTGGAGAAGCTTGTGGTTCTTGATTTATCCAGAAGCAGTCTAGTTGATGCTTGGAAAGGAAAATTGTCTCTTCCAAAATTAAAAATACTTGATCT GCGTCACTCACATGGCCTCATTAGAACCCCAGATTTGTCAGGTCTGCCAAGACTTGAAAATCTAATACTTGAAGACTGCCTCCATTTGGCTCAGATTCAT GATTCTATTGGAGATTTACATTGTCTCATGATGTTAAATCTGAAGAATTGTAAGAGTCTCGTGGAGCTTCCAGAAGAAATGAGTAGATTGAATTCACTTC AAGAGCTTTATTTAAATGGTTGCTCAAATCTTGACAGCCTGAATATGGAGTTAGAGCATCATCAGGGACACAGGTTGCTTCAAAGTGATGGATTTGTTGC TAGTACATCATACATTTCATCTTTGTCGTTGAAGCTATTGTTTCCCTCTAGGTTTTCAGCAAGGAAAACTTCGAGATTTACATTGCCACACTCCTTGACG AGACTAGATTTAAGTGGAACTCCAATTCGTTTTCTTCCGGAAAGCATTAAGGACCTCAGTCCACTCATAGCCCTGACTTTAAGAAATTGCAAAATGCTTC AGACCCTCCCAGAGCTTCCATCCAATTTGTCTTCGTTAGACGTGTCTAGTAGTTATTCACTGCAAACAGTTCCAAATCTAATCCCTTGGACTGTAGTATA TGATTGTGATCAATTAGTTGACATCCAAGATTCGATGAAGCTAGAATTAATCCAAAAGGCTGACTCCCACATGTTCAGAATAATGGAAACGGTCAACGCT CAAATACAGCCCTGGATATTTCAGGTAACAGTTTTTAAGGGCGTATTCAACGTTGTCGTAGCTGATGAAGATGGGATGTTTAAGTTTTATGAGGAGGAAG AAGAGGAGTGGATCATTCAGAAAGAGTTTGTGGGCTGCCTGTCATTTCAAATAGCCTCACCTGCTGCGCACCGGATATATGGTTTTAATCTATTCACAAG GTTTTGTACCACGTCAGAAACCCTTCTCTGTGGTTCTGTTTATCTCGAAATCAGAAACAATACCAGTGGTCGATCCTTGTTTTGTCCCGCCTCTTTCTTT CCTAGTGGCTACAAGCACGGGAATGCTGTACTCCAATCGCTAAGCCACTGGAAATTAGGGGGCGATGATCCTACATTTGACAATGGTGATGACGTGAGTA TTTCAGTGCTTCCACTTGATCCAACTATTCAAATAATGATGGTTGGTGTCCTATGGTTGCATGAAGAGGAAGGAAATGGTGATGATGATGATATCCAATC AAAGAATAAAGTTATCACATCCCAAAGTAGTAGCTCATCATACAGGGAAGTTATCACAACCCACAACAGTAGCGATGATGATGATGATGATGATGATGAT GTACATCTAGCCAATGTAGAAACAGCTTCTCATATTTTTAGGAATTATTCCTGTGCTGCGCGTTATAATCCTGTGCTGCGCGTTATAATCCTGGCAACTT GGAAGTATGTTCGTGGTTATTTGAAAAGAAAGGGATATTGGAAGAAAAAGGGAGGCATCTTTGTTTAG
AA sequence Show only first row Show all	>Potri.011G008420.1 pacid=42780500 polypeptide=Potri.011G008420.1.p locus=Potri.011G008420 ID=Potri.011G008420.1.v4.1 annot-version=v4.1 MQNWLCKGSKIIVTTRNKGLLSANDKWVKCKVEPLDNGKSLELFSWHAFGQAYPVEGFVEDSWKIVNHCNGLPLALRVIGSSLSGKSREVWESALHEMEV IPNCEVQKILRISYDSLDDEYQKNLFLDIACFFNGMDYNYAVRILDGLGIGARFRIDNLIDRCLVEIVEINSDKRLWMHQLVRDMGREISRQESPQCQRI WHHMEAFTVLKETSDAEKLRGLTIDMHALMEDNCTKAICGDSMVRHKHNFFQHYRLPTFPSREWLSDLFFGEQVQSGQASLLPVLSTDALRKMQNVKFLQ LNYLKFHGSYEHFPKNLVWLSWHGFSLRSIPNQLCLEKLVVLDLSRSSLVDAWKGKLSLPKLKILDLRHSHGLIRTPDLSGLPRLENLILEDCLHLAQIH DSIGDLHCLMMLNLKNCKSLVELPEEMSRLNSLQELYLNGCSNLDSLNMELEHHQGHRLLQSDGFVASTSYISSLSLKLLFPSRFSARKTSRFTLPHSLT RLDLSGTPIRFLPESIKDLSPLIALTLRNCKMLQTLPELPSNLSSLDVSSSYSLQTVPNLIPWTVVYDCDQLVDIQDSMKLELIQKADSHMFRIMETVNA QIQPWIFQVTVFKGVFNVVVADEDGMFKFYEEEEEEWIIQKEFVGCLSFQIASPAAHRIYGFNLFTRFCTTSETLLCGSVYLEIRNNTSGRSLFCPASFF PSGYKHGNAVLQSLSHWKLGGDDPTFDNGDDVSISVLPLDPTIQIMMVGVLWLHEEEGNGDDDDIQSKNKVITSQSSSSSYREVITTHNSSDDDDDDDDD VHLANVETASHIFRNYSCAARYNPVLRVIILATWKYVRGYLKRKGYWKKKGGIFV

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G36930			Disease resistance protein (TI...		Potri.011G008420 [exp]	0	1
AT5G44010			unknown protein		Potri.014G192200 [exp]	5.09	0.8949
AT5G01310	bHLH	APTX, bHLH140	APRATAXIN-like (.1)		Potri.016G120200 [exp]	9.59	0.8693
AT1G43770			RING/FYVE/PHD zinc finger supe...		Potri.007G110400 [exp]	14.00	0.8584
AT1G34150			Pseudouridine synthase family ...		Potri.002G061650 [exp]	16.12	0.8578
AT5G01270		CPL2, ATCPL2	carboxyl-terminal domain (ctd)...		Potri.006G099402 [exp]	17.54	0.8567
AT1G80700			unknown protein		Potri.003G180500 [exp]	21.54	0.8480
AT4G02550			unknown protein		Potri.011G163248 [exp]	26.60	0.8574
AT4G25170			Uncharacterised conserved prot...		Potri.001G126300 [exp]	28.98	0.8503
					Potri.015G036450 [exp]	29.79	0.8560
AT5G36930			Disease resistance protein (TI...		Potri.011G008740 [exp]	33.43	0.8112

Compare expression of checked genes

Potri.011G008420 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.