Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G36930 467 / 6e-145 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT1G27170 408 / 1e-121 transmembrane receptors;ATP binding (.1.2) AT1G27180 369 / 5e-107 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT1G72840 348 / 1e-102 Disease resistance protein (TIR-NBS-LRR class) (.1), Disease resistance protein (TIR-NBS-LRR class) (.2) AT5G41750 339 / 5e-99 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT2G16870 333 / 1e-96 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G48770 334 / 2e-96 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G49140 330 / 2e-96 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G18360 328 / 2e-96 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G38340 330 / 4e-96 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G011600 [exp] 2005 / 0 AT5G36930 492 / 1e-154 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.006G270000 [exp] 1969 / 0 AT5G36930 496 / 1e-155 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.011G015400 [exp] 1965 / 0 AT5G36930 438 / 1e-134 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.006G282200 [exp] 1942 / 0 AT5G36930 454 / 2e-140 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.011G013900 [exp] 1942 / 0 AT5G36930 441 / 1e-135 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.006G282600 [exp] 1924 / 0 AT5G36930 466 / 1e-144 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.006G283000 [exp] 1873 / 0 AT5G36930 460 / 8e-143 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.011G012475 [exp] 1865 / 0 AT5G36930 431 / 1e-131 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.011G012000 [exp] 1840 / 0 AT5G36930 489 / 2e-153 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005171 [exp] 703 / 0 AT1G27170 576 / 0.0 transmembrane receptors;ATP binding (.1.2) Lus10011741 [exp] 635 / 0 AT5G36930 540 / 4e-172 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10033825 [exp] 520 / 1e-168 AT5G36930 400 / 3e-123 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10039850 [exp] 491 / 2e-153 AT5G36930 573 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10018616 [exp] 483 / 2e-149 AT5G36930 578 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10011104 [exp] 424 / 1e-128 AT5G17680 574 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10030839 [exp] 408 / 7e-123 AT4G12010 552 / 7e-176 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10003749 [exp] 398 / 1e-118 AT5G17680 517 / 5e-161 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10041060 [exp] 395 / 1e-117 AT5G17680 641 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10029722 [exp] 381 / 6e-114 AT5G17680 608 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00931 [poplar] [flax] NB-ARC NB-ARC domain CL0173 [poplar] [flax] STIR PF13676 [poplar] [flax] TIR_2 TIR domain
Representative CDS sequence Show only first row Show all	>Potri.011G008612.1 pacid=42780775 polypeptide=Potri.011G008612.1.p locus=Potri.011G008612 ID=Potri.011G008612.1.v4.1 annot-version=v4.1 ATGGCTGCTGGGAAATATCAAGAATCCTACTCTTCTCGGTTTTCTAATTGTAAATATCAAGTGTTCTTGAGTCTTAGAGGTGCAGACACCCGCAAGAACT TTACCGATCACCTCTACAAGGCCCTAATTCAAGCAGGGATCCACACATTTAGAGATGATGATGAAATTCAGAGAGGAGAGAATATAGATTTCAAGCTCCA GATGGCAATACAACAATCAAAAATATCGATAATCGTGTTCTCCAAAGACTATGCTTCTTCGAGATGGTGCCTCGATGAACTTGTAATGATCATGGAACGT AAGAGGAATGATGACTGCATAGTTTTGCCAGTATTCTATGATGTGGATCCATCCCAAGTCGGACGTCAAACAGGGAGCTTCGCTGCAGCATTTGTGGAAC ATGAAAAGAGCTTCAACGAGGAGATGGAGCGGGTGAATGGGTGGAGGATTGCTTTGAAAGAAGTGGCAGATTTAGCTGGAATGGTTTTAGGAGATGGGTA CGAGGCACAGTTTGTCCAGTCTATTGTGGAGAATGTCTCAAAGAATTTGGATCCAAAACTATTTTATGTCCCCCTTCATTTCATTGGAAGAGATGCTCTA GTACAAGATATCAACTCATGGTTGCAAGATGGATCCCATGGCGCTGCCATTGCTTTACTCTATGGAATTGGTGGAGTTGGAAAGACAGCCATAGCTAAGA GTGTTTTTAACCAGAACTATTATAAATTTGAAGGAAAGAGCTTTTTATCAAATTTTCGGTCAAAGGATATAGTTTGCCTACAGAGGCAACTTCTTTTCGA CATCCTAAACAAGACTGTTGAGATAAATGATCCTGATGAAGGAATTCTGAAGATTAAGGATGCATTATGTTGCAGAAGAATTCTTATTGTTCTAGATGAT GTGGACAAAAGGGACCAATTCAATAAAATCATTGTCATGCAAAATTGGCTTTGTAAAGGAAGTAAAATCATTGTAACAACCAGAAATAAGGGTTTGTTTT CAGCTAATGATATTGAGCGTGTGGAGTGCAAAGTTGAACCGCTAGATAATGAAAAATCACTTGAGCTTTTCAGTTGGAATGTGTTTGGACAAGATGACCC TGTTGATGGTTTTGTGGAAGACTCTTGGAGAATAGTACATCATTGTAATGGACTTCCATTAGCTCTTCGAGTTATTGGCTCTTCATTGTCCGGAAAAGGA AGAGAGATATGGGAAAGCGCATTACAACAAATGGAAGTGATTCCTAATTTTGATGTTTTAAAGGTTCTTCGAATAAGTTACGACTTTCTTGATGGTGATT ATCCGAAGAACTTATTCCTTGATATCGCATGTTTCTTCAATGGAATGGATGTGGATGATGCAGTTAGGATACTGGATGGGCTCGATAAAGGTGCAAGATT CGGGATTGACAATCTCATCGATAGATGTCTTGTTGAAATCAACAGTGATCAAAGGTTGTGGATGCATCAACTAGTAAGAGATATGGGTAGGGAAATTGCT CGTCAAGAATCACCCAAATGTCAAAGAATATGGCGTCAAGGGGATGCTTTTACAGTTTTGAAAGGAACTATTGATGCTGAAAAATTACGTGGCCTTACCA TTGATATGCATGCATTAATGGAAGATCATTATGCAGAAGTTGTCTATACTGATTCAATGATTTGTCGCAAGCGCCGCAGGCTTAACTTCTTTCAACAATG GCTTTCCGATTTTTCCGATGGGGGAAAATTACAAACTGGCCAAACAAGTTTGTTTCCCATCCTCAGCACGGATGCTTTTAGAAAGATGCCAGATGTAAAA TTTCTCCAACTAAACTACACTAATTTCCATGGAAGTTTTGAGCACTTTCCCAAGAATTTGATATGGTTATGTTGGCATGGATTGTCTTGGAGCTCCATAC CAAATCACGTATGCTTGGAGAAGCTGGTGGTTCTTGATCTATCCAGAAGCTGTCTAGTTGATGTTTGGAAGGGCAAACCGTTTCTTCCAAAATTGAAAAT TCTTGATCTCCGTCACTCTCGTGATCTTATTAGAACCCCAGACTTCTCGGGTCTCCCAGCCCTTGAAAAGCTAATACTTGAAGACTGCATCCGTTTGGTT CAAATTCACGAATCTATTGGTGATTTACAAAGATTGTTGATCTTAAATCTAAGAAATTGTACAAGTCTTTTGGAGCTTCCAGAAGAAATGAGTAGATTGA ATTCACTTCAAGAGCTGGTTTTAGATGGTTGCTCAAATCTTGACAGCCTGAATACGGAGTTAGAGCATCATCAGGGACGCAAATTGCTTCAAAGTGATGC AATTGTTTCAAGTACATCATTCATTTCATCTCTTCCATTGAAGCTATTCTTTCCCTCTAGGTTTTCAACGAGGAAAATGTTGAGATTTACCTCGTTTTCA TTGCCACGCTTCTTGGAGAGTCTAGATTTAAGTGGAACTCCAATTCGTTTTCTTCCAGAAAGCATCAAGGATCTTGGTCTACTCAGACACCTATATTTAA GAAATTGCAAAATGCTTCAAGCACTCCCGGAGCTTCCATCCCATTTGGATTCGTTAGATGTGTCCTTTTGCTATTCACTGCAAAGACTTGCAAATCCAAA CAGTTGGACTGAAGGAGATGGTTGTGATCACTTAGTCGAGTTCCAAGATCGGATAAAGCAAGAATTAATCCAAAAGTTTGACTCTCACGTGTTCAGAATA ATGGAAACGGTTTGTGCTCAAATACAAACATCGAGATTTCAGATAACATTTATGGATGGCATATTCAACGTTGTCGTATCTGTATTTGACAAAGATGAGA TGTTAAGGGGGTTTTATGAGGAGGAGGAAGAGGATAAATGGCTAATTCAGAATGAGTTTGTAGATAACTTTTCATTCAAAATATCCTCACCTCCTCCTGC GCACCGGATATGTGGCTTTAATCTGTTCATAAGTTGTGTGACGTCAGCATACCGTGGCTTTAGTTATGTTTATATTGAAATCAGAAACAATACCAGTGGT CGATCCTTTCTTTGTCAAGCCTCTTTCTTCCCTATGAGATACAAGTGTGATGTTCGTGAAATCCAATCGCTATTGCACACGAAATTAGGGGGCAATGATC CTACATTTGATAATGGTGATGACGTGAGTATTTCAGTGCTTCCACATGGTCCAGCTATCCAAATAAAGGCGATTGGTGTCCAATGGTTGCATGAAGAGGA AGGAAAGGATGAAGTTATCAATGCCAAAGTAGAAACAGCTTCTCGTATTTTTAGAAATTATTATTGTGGTTTCCATGGTAAATCCAATGATGGCAAAATC GGTTGGTGGTGTTTTGCAAAGAAAGATTTGGCTTCTACTTCTCTTCTTCTCGGTTTTGGATCCGCTTCTTTCTACAGATCGGTCTGTTATGTGTTTCTTG TTCTTCTCCTCTGCTTCAGGTGGCGGTGGAGTTGTGGGTGTCGCCGCTGTGGTCTAGGCGTTGATGATTTTCGCTCCTCTTGGTAG
AA sequence Show only first row Show all	>Potri.011G008612.1 pacid=42780775 polypeptide=Potri.011G008612.1.p locus=Potri.011G008612 ID=Potri.011G008612.1.v4.1 annot-version=v4.1 MAAGKYQESYSSRFSNCKYQVFLSLRGADTRKNFTDHLYKALIQAGIHTFRDDDEIQRGENIDFKLQMAIQQSKISIIVFSKDYASSRWCLDELVMIMER KRNDDCIVLPVFYDVDPSQVGRQTGSFAAAFVEHEKSFNEEMERVNGWRIALKEVADLAGMVLGDGYEAQFVQSIVENVSKNLDPKLFYVPLHFIGRDAL VQDINSWLQDGSHGAAIALLYGIGGVGKTAIAKSVFNQNYYKFEGKSFLSNFRSKDIVCLQRQLLFDILNKTVEINDPDEGILKIKDALCCRRILIVLDD VDKRDQFNKIIVMQNWLCKGSKIIVTTRNKGLFSANDIERVECKVEPLDNEKSLELFSWNVFGQDDPVDGFVEDSWRIVHHCNGLPLALRVIGSSLSGKG REIWESALQQMEVIPNFDVLKVLRISYDFLDGDYPKNLFLDIACFFNGMDVDDAVRILDGLDKGARFGIDNLIDRCLVEINSDQRLWMHQLVRDMGREIA RQESPKCQRIWRQGDAFTVLKGTIDAEKLRGLTIDMHALMEDHYAEVVYTDSMICRKRRRLNFFQQWLSDFSDGGKLQTGQTSLFPILSTDAFRKMPDVK FLQLNYTNFHGSFEHFPKNLIWLCWHGLSWSSIPNHVCLEKLVVLDLSRSCLVDVWKGKPFLPKLKILDLRHSRDLIRTPDFSGLPALEKLILEDCIRLV QIHESIGDLQRLLILNLRNCTSLLELPEEMSRLNSLQELVLDGCSNLDSLNTELEHHQGRKLLQSDAIVSSTSFISSLPLKLFFPSRFSTRKMLRFTSFS LPRFLESLDLSGTPIRFLPESIKDLGLLRHLYLRNCKMLQALPELPSHLDSLDVSFCYSLQRLANPNSWTEGDGCDHLVEFQDRIKQELIQKFDSHVFRI METVCAQIQTSRFQITFMDGIFNVVVSVFDKDEMLRGFYEEEEEDKWLIQNEFVDNFSFKISSPPPAHRICGFNLFISCVTSAYRGFSYVYIEIRNNTSG RSFLCQASFFPMRYKCDVREIQSLLHTKLGGNDPTFDNGDDVSISVLPHGPAIQIKAIGVQWLHEEEGKDEVINAKVETASRIFRNYYCGFHGKSNDGKI GWWCFAKKDLASTSLLLGFGSASFYRSVCYVFLVLLLCFRWRWSCGCRRCGLGVDDFRSSW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G36930			Disease resistance protein (TI...		Potri.011G008612 [exp]	0	1
					Potri.002G008050 [exp]	18.16	0.8059
					Potri.019G025866 [exp]	18.97	0.8513
AT1G78310			VQ motif-containing protein (....		Potri.002G099900 [exp]	19.79	0.8093
					Potri.019G129780 [exp]	20.85	0.8570
AT3G22590		PHP, CDC73	PLANT HOMOLOGOUS TO PARAFIBROM...		Potri.010G085500 [exp]	24.08	0.8219	PAFE901
					Potri.019G025833 [exp]	25.69	0.8432
					Potri.012G009345 [exp]	29.12	0.8263
					Potri.012G114166 [exp]	29.24	0.8475
AT5G04920			EAP30/Vps36 family protein (.1...		Potri.010G246400 [exp]	31.63	0.7716
					Potri.011G073291 [exp]	32.31	0.8245

Compare expression of checked genes

Potri.011G008612 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.