Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G36930 489 / 2e-153 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT1G27170 428 / 4e-129 transmembrane receptors;ATP binding (.1.2) AT1G27180 383 / 3e-112 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G49140 361 / 9e-108 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G41750 357 / 7e-106 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT5G17680 356 / 9e-104 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G18360 343 / 5e-102 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G48770 346 / 8e-101 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G41540 341 / 5e-100 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT1G72840 339 / 3e-99 Disease resistance protein (TIR-NBS-LRR class) (.1), Disease resistance protein (TIR-NBS-LRR class) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G012475 [exp] 1892 / 0 AT5G36930 431 / 1e-131 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.011G008612 [exp] 1863 / 0 AT5G36930 467 / 6e-145 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.011G015400 [exp] 1851 / 0 AT5G36930 438 / 1e-134 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.011G008868 [exp] 1850 / 0 AT5G36930 471 / 1e-146 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.006G270000 [exp] 1845 / 0 AT5G36930 496 / 1e-155 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.011G008292 [exp] 1843 / 0 AT5G36930 454 / 2e-140 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.011G013900 [exp] 1823 / 0 AT5G36930 441 / 1e-135 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.006G282200 [exp] 1804 / 0 AT5G36930 454 / 2e-140 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.006G282600 [exp] 1802 / 0 AT5G36930 466 / 1e-144 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005171 [exp] 707 / 0 AT1G27170 576 / 0.0 transmembrane receptors;ATP binding (.1.2) Lus10011741 [exp] 647 / 0 AT5G36930 540 / 4e-172 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10033825 [exp] 519 / 3e-168 AT5G36930 400 / 3e-123 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10039850 [exp] 524 / 6e-166 AT5G36930 573 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10018616 [exp] 518 / 6e-163 AT5G36930 578 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10030839 [exp] 435 / 6e-133 AT4G12010 552 / 7e-176 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10011104 [exp] 425 / 2e-129 AT5G17680 574 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10029722 [exp] 412 / 2e-125 AT5G17680 608 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10041060 [exp] 396 / 3e-118 AT5G17680 641 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10003749 [exp] 378 / 1e-111 AT5G17680 517 / 5e-161 disease resistance protein (TIR-NBS-LRR class), putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00931 [poplar] [flax] NB-ARC NB-ARC domain CL0173 [poplar] [flax] STIR PF13676 [poplar] [flax] TIR_2 TIR domain
Representative CDS sequence Show only first row Show all	>Potri.011G012000.1 pacid=42781152 polypeptide=Potri.011G012000.1.p locus=Potri.011G012000 ID=Potri.011G012000.1.v4.1 annot-version=v4.1 ATGGCTGCTGGGAAGTATCAAGAATCCTACTCTTCACGGTTTCCTAATTGTAAATATCAAGTGTTCTTGAGTTTTAGAGGTGAAGACACCCGCAAGAACT TTACCGATCACCTCTACACGGCCCTGGTTCAAGCAGGGATTCACACATTTAGAGATGATAATGAAATTCGGAAAGGAGAGAATATAGATGTCGAGCTCCA GAAGGCAATACAACAATCAAAAATATCGATAATCGTGTTCTCCAAAGACTATGCTTCGTCGAGATGGTGCCTGGATGAACTTGTAATGATCATGGAACGT AAGAGGAATGCTGACTGTATAGTTTTGCCAGTATTCTATGATGTGGATCCATCCCAAGTCGGACGTCAAACAGGGAGCTTCTCTGCAGCATTTGTGGAAC ATGAAAAGAGCTTCAACGAGGAGATGGAGCGGGTGAATGGGTGGAGGATTGCTTTAAAGGAAGTGGCTGATTTAGCTGGAATGGTTTTAGGAGATGGGTA CGAGGCACCGTTGGTCCAATCTATTGTGGAGAAGGTCTTAAAGAATTTGGATAAAAAAATGTTTCATGTACCCCTTCATTTCATTGGAAGAGATCCTCTA GTACAATATATCAACTCATGGTTGCAAGATGGATCTCATGGTGTTGCCATTGCTTTACTCTATGGAATTGGTGGAGTTGGAAAGACAGCCATAGCTAAGA GTGTTTATAATCAGAACTCTTATAAATTTGAAGGAAAGAGCTTCCTGTCAAATTTTAGATCAAAGGATATAGTTTTTCTACAGAGGCAACTTCTTTCCGA CATCCTAAAAAAGACTGTTGATGGGATAAATGATGAAGATGAAGGAATTCTGAAGATTAAGGATGCATTATGTTGCAGAAGAACTCTTATTGTTCTAGAT GATGTGGACAAAAGGGATCAATTCAATGCAATCATTGGCATGCAAAATTGGCTTTGTAAAGGAAGTAAAATCATTGTAACAACCAGAAATAAGGGTCTGT TTTCAGCTAATGATATTGAGTGGATCCGGTACAAAGTTGAACCGCTAGATATTAAAAAATCACTTGAGCTTTTCAGTTGGAATGCCTTTGTACAAGCTGA CCCTGTTGATGGTTTCGTAGAAGCATCTTTGAGAATAGTACATCATTGTAATGGACTTCCATTAGCTCTTCGAGTTATTGGCTCTTCATTGTCCGGAAAA GGAAGAGAAATATGGGAAAGCGCATTACAACAAATGGAAGTGATTCCTAATTTTAAAGTTCAAGAGATTCTTCGAATAAGTTACGACTTTCTTGATGGTG ATTATCCGAAGAACTTATTCCTTGATATCACATGTTTCTTCAATGGAATGGATGTGGATGATGCAGTTAGGATACTGGATGGGCTCGATAAAGGTGCAAG ATTTGGGATTGACAATCTCATCGATAGATGTCTTGTTGAAATCAACAGTGATCAAAGGTTGTGGATGCATCAACTAGTAAGAGATATGGGAAGGGAAATT GCTCGTCAAGAATCACTCAAATGTCAAAGAATATGGCGCCACGAGGATGCTTTTACAGTTTTGAAAGGAACTACTGATGCTGAAAATTTGCGTGGCCTTA CCATTGATATGCATGCATTAATGGAAGATAATTATGCAAAAGTTGTCTGTACTGATTCAATGGTTCGCCATAGGCTTAACTTCTTTCAACAATGGCTTTC TGATTTTTCCTATGGGGGAAAATTACAAACTGGCCAAACAAGTTTGTTTCCTATCCTCAGCACGGATGCTTTTAGAAAGATGACAGATGTAAAATTTCTC GAACTAAACTACACTAATTTTCATGGAAGTTTTGAGCACTTTCCGAAGAATTTGATATGGTTGTGTTGGCATGGATTGCCTTTGAGCTCCATACCAAATA ACGTATGCTTGGAGAAGCTTGTTGTTCTTGATCTATCCAGAAGTTGTCTAGTTGATGCTTGGAAAGGCAAACTGTTTCTTCCAAAATTGAAAGTTCTTGA TCTCCGTGACTCTCATGATCTCATTAGAACCCCAGATTTCTCGGGTCTCTCAAGCCTTGAAAAGCTAATACTTGAAGATTGCATCCGTTTGGTTCAAATC CATGAATCTATTGGTGATTTACAAAGATTGTTGATCTTAAATCTAAAAAATTGTACTAGTCTTATGGAGCTTCCAGAAGAAATGAGTACATTGAATTCGC TTCAAGAGCTGGTTTTAGATGGTTGCTCAAATCTTGACAGCCTGAATATGGAGTTAGAGCATCATCAGGGGCGCAACTTTCTTCAAAGCAATGGAGTTGT TGCAAGTACATCATACATTACATCTCTTCCATTGAAGCTATTCTTTCCCTCTAGGTTTTCAGCGAGGAAAATGTTGAGATGTACCTCGTTTGCACTGCCA CGCTCCGTGACGAGACTAGATTTAAGTGGAACAACAATGTGTTCTCTTCCAGAAAGCATCAAGGATCTTGGTCTACTCGATTTCCTATTTTTAAGAAATT GCAAAATGCTTCAGGCACTCCCGGAGCTTCCATCCCATTTGCGGGTGTTAGATGTGTCCTTTTGCTATTCACTGCAAAGACTTGCAAATCTAAGCCGTTG GACTGCATCAGAGGGTTGTGATCAATTATTCGAGTTCCAAGATCGGATAAAGCAAGAATTAATCCAAAAGTTGGACTCACACGTGTTCAGAGTAATGGAA AGGGTCAGTGCTCAACTACAGTCATCGAGATTTAAGATAACATTTATAGATGGCATATTCAACGTTGTCGTATATGTATTTGATGAAGATGAGAAGTTAA GGGGGTTTCATGAGGAGGGAGAAGAGGATAAATGGCTAATTCAGAATGAGTTTGTAGATAACTTTTCATTCAAAATACCCTCACCTCCTCCTGCGCACCG GATATGTGGCTTTAATATGTTCACAAGGTTTAGTGTGACGTCAGAGTACAGTCGTTATGATGCTTTTCATATTGAAATCAGAAACAATACCAGTGGTCGA TACTTGCTTCGTCAAGCCTCTATCTTCCCTATAATTTACGCGCCTGGTGTTCGTGAATTCCAATCGCTAATGCACATGAAATTATTTGTCGGTGATCCTA CATTTGATAATGGTGATGACGTGAGTATTTCAGTGCTTCCACATGATCCAGCTATTCAAATAAAGGCGATTGGAGTACAATGGTTGCATGAAGAGGAAGG AAAGAATGATGATATCCAATCAAAGGATGAAGTTATCAATGCCCACAACAGTAGCGATGATGATGATGATGATGATGCAGCACACGTAGCCAAAGTAGAA ATAGCTTCTCGTATTTTTAGAAATTATTATTGTGCTTTGCATGGTAATATCGGTTGGTGGTATTTTGCAAAGAAGGGTCTAAAACTTATATTAATTTAG
AA sequence Show only first row Show all	>Potri.011G012000.1 pacid=42781152 polypeptide=Potri.011G012000.1.p locus=Potri.011G012000 ID=Potri.011G012000.1.v4.1 annot-version=v4.1 MAAGKYQESYSSRFPNCKYQVFLSFRGEDTRKNFTDHLYTALVQAGIHTFRDDNEIRKGENIDVELQKAIQQSKISIIVFSKDYASSRWCLDELVMIMER KRNADCIVLPVFYDVDPSQVGRQTGSFSAAFVEHEKSFNEEMERVNGWRIALKEVADLAGMVLGDGYEAPLVQSIVEKVLKNLDKKMFHVPLHFIGRDPL VQYINSWLQDGSHGVAIALLYGIGGVGKTAIAKSVYNQNSYKFEGKSFLSNFRSKDIVFLQRQLLSDILKKTVDGINDEDEGILKIKDALCCRRTLIVLD DVDKRDQFNAIIGMQNWLCKGSKIIVTTRNKGLFSANDIEWIRYKVEPLDIKKSLELFSWNAFVQADPVDGFVEASLRIVHHCNGLPLALRVIGSSLSGK GREIWESALQQMEVIPNFKVQEILRISYDFLDGDYPKNLFLDITCFFNGMDVDDAVRILDGLDKGARFGIDNLIDRCLVEINSDQRLWMHQLVRDMGREI ARQESLKCQRIWRHEDAFTVLKGTTDAENLRGLTIDMHALMEDNYAKVVCTDSMVRHRLNFFQQWLSDFSYGGKLQTGQTSLFPILSTDAFRKMTDVKFL ELNYTNFHGSFEHFPKNLIWLCWHGLPLSSIPNNVCLEKLVVLDLSRSCLVDAWKGKLFLPKLKVLDLRDSHDLIRTPDFSGLSSLEKLILEDCIRLVQI HESIGDLQRLLILNLKNCTSLMELPEEMSTLNSLQELVLDGCSNLDSLNMELEHHQGRNFLQSNGVVASTSYITSLPLKLFFPSRFSARKMLRCTSFALP RSVTRLDLSGTTMCSLPESIKDLGLLDFLFLRNCKMLQALPELPSHLRVLDVSFCYSLQRLANLSRWTASEGCDQLFEFQDRIKQELIQKLDSHVFRVME RVSAQLQSSRFKITFIDGIFNVVVYVFDEDEKLRGFHEEGEEDKWLIQNEFVDNFSFKIPSPPPAHRICGFNMFTRFSVTSEYSRYDAFHIEIRNNTSGR YLLRQASIFPIIYAPGVREFQSLMHMKLFVGDPTFDNGDDVSISVLPHDPAIQIKAIGVQWLHEEEGKNDDIQSKDEVINAHNSSDDDDDDDAAHVAKVE IASRIFRNYYCALHGNIGWWYFAKKGLKLILI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G36930			Disease resistance protein (TI...		Potri.011G012000 [exp]	0	1
AT2G20142			Toll-Interleukin-Resistance (T...		Potri.001G007501 [exp]	1.41	0.9044
AT4G27220			NB-ARC domain-containing disea...		Potri.018G145578 [exp]	1.73	0.9008
					Potri.007G038800 [exp]	2.00	0.8801
AT1G69550			disease resistance protein (TI...		Potri.005G030318 [exp]	2.44	0.9132
AT3G53310	B3	REM20	AP2/B3-like transcriptional fa...		Potri.004G219600 [exp]	4.69	0.8621
AT2G20142			Toll-Interleukin-Resistance (T...		Potri.005G032000 [exp]	4.89	0.8709
AT3G14470			NB-ARC domain-containing disea...		Potri.017G136400 [exp]	4.89	0.8203
AT4G27220			NB-ARC domain-containing disea...		Potri.018G145582 [exp]	5.19	0.8687
AT2G20142			Toll-Interleukin-Resistance (T...		Potri.005G030413 [exp]	6.70	0.8760
AT1G69550			disease resistance protein (TI...		Potri.005G031899 [exp]	7.48	0.8693

Compare expression of checked genes

Potri.011G012000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.