Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G36930 430 / 3e-131 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT1G27170 386 / 7e-114 transmembrane receptors;ATP binding (.1.2) AT1G27180 345 / 4e-99 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G17680 315 / 1e-89 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G18360 308 / 3e-89 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT1G72840 310 / 4e-89 Disease resistance protein (TIR-NBS-LRR class) (.1), Disease resistance protein (TIR-NBS-LRR class) (.2) AT5G49140 303 / 4e-87 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G41750 304 / 7e-87 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT4G12010 302 / 2e-85 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G19510 297 / 2e-84 Disease resistance protein (TIR-NBS-LRR class) (.1), Disease resistance protein (TIR-NBS-LRR class) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G012000 [exp] 1805 / 0 AT5G36930 489 / 2e-153 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.011G008612 [exp] 1799 / 0 AT5G36930 467 / 6e-145 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.011G013900 [exp] 1795 / 0 AT5G36930 441 / 1e-135 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.011G015400 [exp] 1790 / 0 AT5G36930 438 / 1e-134 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.006G270000 [exp] 1757 / 0 AT5G36930 496 / 1e-155 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.006G282200 [exp] 1752 / 0 AT5G36930 454 / 2e-140 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.011G008292 [exp] 1746 / 0 AT5G36930 454 / 2e-140 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.011G008868 [exp] 1744 / 0 AT5G36930 471 / 1e-146 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.011G011600 [exp] 1738 / 0 AT5G36930 492 / 1e-154 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005171 [exp] 666 / 0 AT1G27170 576 / 0.0 transmembrane receptors;ATP binding (.1.2) Lus10011741 [exp] 596 / 0 AT5G36930 540 / 4e-172 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10033825 [exp] 513 / 1e-165 AT5G36930 400 / 3e-123 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10039850 [exp] 486 / 1e-151 AT5G36930 573 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10018616 [exp] 483 / 2e-149 AT5G36930 578 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10030839 [exp] 402 / 1e-120 AT4G12010 552 / 7e-176 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10011104 [exp] 401 / 2e-120 AT5G17680 574 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10003749 [exp] 371 / 7e-109 AT5G17680 517 / 5e-161 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10041060 [exp] 365 / 7e-107 AT5G17680 641 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10029722 [exp] 346 / 1e-101 AT5G17680 608 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00931 [poplar] [flax] NB-ARC NB-ARC domain CL0173 [poplar] [flax] STIR PF13676 [poplar] [flax] TIR_2 TIR domain
Representative CDS sequence Show only first row Show all	>Potri.011G012475.1 pacid=42781726 polypeptide=Potri.011G012475.1.p locus=Potri.011G012475 ID=Potri.011G012475.1.v4.1 annot-version=v4.1 ATGGCTGCTGGGAAGTATCAAGAATCCTACTCTTCACGGTTTCCTAATTGTAAATATCAAGTGTTCTTGAGTTTTAGAGGTGAAGACACCCGCAAGAACT TTACCGATCACCTCTACACGGCCCTGGTTCAAGCAGGGATTCACACATTTAGAGATGATAATGAAATTCGGAGAGGAGAGAATATAGATTTCGAGCTCCA GAAGGCAATACAACAATCAAAAATATCGATAATCGTGTTCTCCAAAGACTATGCCTCGTCGAGATGGTGCCTGGATGAACTTGTAATGATCATGGAACGT AAAAGGAATCCTGATCACTGCATAGTTTTGCCAGTATTCTATGATGTGGATCCATCCCAAGTCGGACGTCAAACAGGGAGCTTCTCTGCAGCATTTGTGG AACATGAAAAGAGCTTCAACGAGGAGATGGAGCGGGTGAATGGGTGGAGGATTGCTTTGAAGGAAGTTGCAGATTTAGCTGGAATGGTTCTAGGAGATGG GTACGAGGCACCGTTTGTCCAATCTATTGTGGAGAAGGTCTTAAAGAATTTGGATCAAAAAATGTTTCATGTACCCCCTCATTTCATTGGAAGAGATCCT CTAGTACAAGATATCAACTCATGGTTGCAAGATGGATCCCATGCTGCTGCCATTGCTTTACTCTATGGAATTGGTGGAGTTGGAAAGACAGCCATAGCTA AGAGTGTTTATAACCAAAACTCTTATAAATTTGAAGGAAAGAGCTTCCTGTCAAATTTTAGGTCAAAGGATATAGTTTGCCTACAGAGACAACTTCTTTC CGACATCCTAAAAAAGACTGTTGATGAGATAAATGATGAAGATGAAGGAATTCTGAAGATTAAGGATGCCTTATGTTGCAGAAGAACTCTTATTGTTCTA GATGATGTGGACAAAAGGGACCAATTCAATAAAATCGTTGGCATGCAAAATTGGCTTTGTAAAGGAAGTAAAATAATTGTAACAACCAGAAATAAGGGTC TGTTTTCAGCTAATGATATTGAGTGGGTCCGGTGCGAAGTCGAACCGCTAGATATTGAAAAATCTTTTGAGCTTTTCAGTTGGAATGTCTTTGGACAACC TGACCCTGTTGATGGTTTTGTAGAAGACTCTTGGAGAATAGTACATCATTGTAGTGGACTTCCATTAGCTCTTCGAGTTATTGGCTCCTCATTGTCCGGA AAAGGAAGAGAAATATGGGAAAGCGCATTACAACAATTGGAAGTGATTCCTAATTTTGAAGTTCTAAAGGTTCTTCGAATAAGTTACGACTTTCTTGATG GTGATTGTCTGAAGAACTTATTCCTTGATATCGCATGTTTCTTCAATGGAATGGATGTGGATGATGCAGTTAGGATACTGGATGGGCTCGCTAAAGGTGC AAGATTTGGGATTGACAATCTCATCGATAAATGTCTTGCTGAAATCAACATTGATCAAAGGTTGTGGATGCATCAACTAGTAAGAGCTATGGGAAGGGAA ATTGCTCGTCAAGAATCTGCCAAATGTCAAAGAATATGGCGTCACGAGGATGCTTTTACCGTTTTGAAAGGAACTACTGATGCTGAAAATTTGTGTGGCC TTACCATTGATATGCATGCATTAATGGAAGATAATTATGCAGAAGTTGTCTGTACTGATTCAATGGTTCTCCGCAGTCTTAACTTCTTTCAACAATGGCT TTCCAATTTTTCCATTGAGGGAAAATTACAAACTAGCCAAACAAGTTTGTTTCCCATCCTCAGCACGGATGCTTTTAGAAAGATGGCAGATGTAAAATTT CTCCAGCTAAACTACACTAATTTTTGTGGAAGTTTTGAGCACTTTCCCAAGAAGTTGATATGGTTATGTTGGCATGGATTGTCTTTGAAATCCATACCAA ATCACGTATGCTTGGAGAAGCTGGTGGTTCTTGATCTATCCAGAAGCTGTCTGGTTGATGCTTGGAAAGGCAAATTGTTTCTTCCAAAATTGAAAATTCT TGATCTCCGTCACTCTCGTGATCTCATTAGAACCCCAGACTTCTCGGGTCTCCCATCCCTTGAAAAGCTAATACTTGAGGACTGCATCCGTTTGGTTCAA ATTCACGAATCTATTGGTGATTTACAAAGATTGTTGATCTTAAATCTAAGAAATTGTACAAGTCTTGTGGAGCTTCCAGAAGAAATGAGTAGACTGAATT CACTTCAAGAGCTGGTTTTAGATGGTTGTTCAAATCTTAACAACCTGAATATGGAGTTAGAGCATGATCAGGGGCGCAAGTTGCTTCAAAGTGATGGAAT TGTTGCAAGTACATCATTCATTTCATCTCTTCCATTGAAGCTATTCTTTCCCTCTAGGTTTTCAACGAGGAAAATGTTGAGATTTACCTTGTTTTCACTG CCACGCTTCTTGGAGAGTCTAGATTTAAGTGGAACTCCAATTCGTTTTCTTCCGGAAAGCATCAAGGATCTTGGTCTACTCAGAGCCCTATATTTAAGAA ATTGCAAAATGCTTCAGGCACTCCCAGAGCTTCCATTCCTTTTGGATTTGTTAGATGTGTCCTTGTGCTATTCACTGCAAGGACTTGCAAATCCAAATAG TTGGACTGAAGGAGATGGTTGCGATCACTTAGTCGAGTTCCAAGATCGGATAAAGCAAGAATTAATCCAAAAGTTAGACTCTCAAATGTTCAGAATAATG GAAACGGTTAGTGCTCAAATACAGCCATCGAGATTTCAGATATTATTTGGTCATGGCATATTCAACCTTGTCGTATCTGTATTTGATGATGAAGAGAAGT CGAGGTGGTTTCATGGGGAGGAAGAAGAGGATAAATGGCTAATTCAGAATGAGTTTGTAGATTACTTTTCATTCAAAATATCCTCACCTCCTCCTGCGCA CCGGATATGTGGCTTTAATTTATTCACAGGTTGTTGTGTGAGTAAATTATTGAAATCAGAGTACACTTTCTATGATGAATTTTTTATTGAAATCAGAAAC AATACCAGTGGTCGATCCTTGATTTGTCAAGCCAAAATCTTCCCTGCGAGTTACGCGCGTGGTCTTCGTGAAATCCAATTGCTAAGCCACTGGAAATTAG GGGTCGATGATCCTACATTTGATAATGGTGATGACGTGAGTATTTCAGTGCGTCCACAGGGTCCAGCTATTCAAATAAGGACGGTTGGTGTACAATGGTT GCATGAAGAGGAAGGAGATGATGATGATATCCAATCAAAGGATGAAGTTATCAATGCCCACAACAGTAGCGATGATGATGATGCACACGTAGCCAAAGTA CAAATAGCTTCTCATATTTTTAGAAATTATTATTGTGCTTTCCGTACCAATGGCGGTTTTGACAGGTCGTATTATTTTAGGCTTCGTGATGCCTCGGTTT CTTTACTGCAAAGTAGATTTTATTTTAAAAAATTAATTTGA
AA sequence Show only first row Show all	>Potri.011G012475.1 pacid=42781726 polypeptide=Potri.011G012475.1.p locus=Potri.011G012475 ID=Potri.011G012475.1.v4.1 annot-version=v4.1 MAAGKYQESYSSRFPNCKYQVFLSFRGEDTRKNFTDHLYTALVQAGIHTFRDDNEIRRGENIDFELQKAIQQSKISIIVFSKDYASSRWCLDELVMIMER KRNPDHCIVLPVFYDVDPSQVGRQTGSFSAAFVEHEKSFNEEMERVNGWRIALKEVADLAGMVLGDGYEAPFVQSIVEKVLKNLDQKMFHVPPHFIGRDP LVQDINSWLQDGSHAAAIALLYGIGGVGKTAIAKSVYNQNSYKFEGKSFLSNFRSKDIVCLQRQLLSDILKKTVDEINDEDEGILKIKDALCCRRTLIVL DDVDKRDQFNKIVGMQNWLCKGSKIIVTTRNKGLFSANDIEWVRCEVEPLDIEKSFELFSWNVFGQPDPVDGFVEDSWRIVHHCSGLPLALRVIGSSLSG KGREIWESALQQLEVIPNFEVLKVLRISYDFLDGDCLKNLFLDIACFFNGMDVDDAVRILDGLAKGARFGIDNLIDKCLAEINIDQRLWMHQLVRAMGRE IARQESAKCQRIWRHEDAFTVLKGTTDAENLCGLTIDMHALMEDNYAEVVCTDSMVLRSLNFFQQWLSNFSIEGKLQTSQTSLFPILSTDAFRKMADVKF LQLNYTNFCGSFEHFPKKLIWLCWHGLSLKSIPNHVCLEKLVVLDLSRSCLVDAWKGKLFLPKLKILDLRHSRDLIRTPDFSGLPSLEKLILEDCIRLVQ IHESIGDLQRLLILNLRNCTSLVELPEEMSRLNSLQELVLDGCSNLNNLNMELEHDQGRKLLQSDGIVASTSFISSLPLKLFFPSRFSTRKMLRFTLFSL PRFLESLDLSGTPIRFLPESIKDLGLLRALYLRNCKMLQALPELPFLLDLLDVSLCYSLQGLANPNSWTEGDGCDHLVEFQDRIKQELIQKLDSQMFRIM ETVSAQIQPSRFQILFGHGIFNLVVSVFDDEEKSRWFHGEEEEDKWLIQNEFVDYFSFKISSPPPAHRICGFNLFTGCCVSKLLKSEYTFYDEFFIEIRN NTSGRSLICQAKIFPASYARGLREIQLLSHWKLGVDDPTFDNGDDVSISVRPQGPAIQIRTVGVQWLHEEEGDDDDIQSKDEVINAHNSSDDDDAHVAKV QIASHIFRNYYCAFRTNGGFDRSYYFRLRDASVSLLQSRFYFKKLI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G36930			Disease resistance protein (TI...		Potri.011G012475 [exp]	0	1
AT5G36930			Disease resistance protein (TI...		Potri.011G014101 [exp]	1.41	0.9049
AT1G70250			receptor serine/threonine kina...		Potri.004G014250 [exp]	3.87	0.8940
AT1G55790			Domain of unknown function (DU...		Potri.011G141900 [exp]	6.16	0.8116
AT5G49760			Leucine-rich repeat protein ki...		Potri.004G231500 [exp]	8.06	0.8795
AT5G58940		CRCK1	calmodulin-binding receptor-li...		Potri.009G041900 [exp]	9.48	0.8467
AT1G78340		ATGSTU22	glutathione S-transferase TAU ...		Potri.005G037801 [exp]	9.79	0.8348
					Potri.010G134950 [exp]	11.04	0.7896
					Potri.010G007976 [exp]	11.83	0.8656
AT5G36930			Disease resistance protein (TI...		Potri.011G011600 [exp]	15.90	0.8616
AT1G63770			Peptidase M1 family protein (....		Potri.003G129500 [exp]	16.52	0.7714

Compare expression of checked genes

Potri.011G012475 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.