Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G24290 690 / 0 AAA-type ATPase family protein (.1) AT1G77470 69 / 3e-12 EMB2810, RFC5, RFC3 replication factor C 5, EMBRYO DEFECTIVE 2810, replication factor C subunit 3 (.1) AT1G63160 64 / 6e-11 EMB2811, RFC2 EMBRYO DEFECTIVE 2811, replication factor C 2 (.1) AT2G02480 58 / 2e-08 STI STICHEL, AAA-type ATPase family protein (.1) AT1G21690 57 / 2e-08 RFC4, EMB1968 replication factor C 4, embryo defective 1968, ATPase family associated with various cellular activities (AAA) AT1G14460 50 / 5e-06 AAA-type ATPase family protein (.1) AT3G02450 46 / 6e-05 cell division protein ftsH, putative (.1) AT4G24790 46 / 6e-05 AAA-type ATPase family protein (.1.2) AT1G03000 45 / 0.0002 PEX6 peroxin 6 (.1) AT3G05530 44 / 0.0002 ATS6A.2, RPT5A regulatory particle triple-A ATPase 5A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G081200 [exp] 75 / 3e-14 AT1G77470 577 / 0.0 replication factor C 5, EMBRYO DEFECTIVE 2810, replication factor C subunit 3 (.1) Potri.003G123200 [exp] 64 / 1e-10 AT1G63160 587 / 0.0 EMBRYO DEFECTIVE 2811, replication factor C 2 (.1) Potri.005G181300 [exp] 59 / 3e-09 AT1G21690 551 / 0.0 replication factor C 4, embryo defective 1968, ATPase family associated with various cellular activities (AAA) Potri.003G044900 [exp] 58 / 1e-08 AT2G02480 1147 / 0.0 STICHEL, AAA-type ATPase family protein (.1) Potri.004G106500 [exp] 47 / 4e-05 AT3G02450 657 / 0.0 cell division protein ftsH, putative (.1) Potri.003G133700 [exp] 46 / 9e-05 AT1G64110 1145 / 0.0 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Potri.012G091700 [exp] 45 / 0.0001 AT4G24790 656 / 0.0 AAA-type ATPase family protein (.1.2) Potri.005G025100 [exp] 45 / 0.0001 AT3G05530 795 / 0.0 regulatory particle triple-A ATPase 5A (.1) Potri.013G016800 [exp] 45 / 0.0001 AT3G05530 800 / 0.0 regulatory particle triple-A ATPase 5A (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018144 [exp] 76 / 2e-14 AT1G77470 564 / 0.0 replication factor C 5, EMBRYO DEFECTIVE 2810, replication factor C subunit 3 (.1) Lus10025689 [exp] 75 / 4e-14 AT1G77470 568 / 0.0 replication factor C 5, EMBRYO DEFECTIVE 2810, replication factor C subunit 3 (.1) Lus10024504 [exp] 60 / 2e-09 AT1G63160 615 / 0.0 EMBRYO DEFECTIVE 2811, replication factor C 2 (.1) Lus10008003 [exp] 59 / 3e-09 AT1G63160 605 / 0.0 EMBRYO DEFECTIVE 2811, replication factor C 2 (.1) Lus10028543 [exp] 56 / 4e-08 AT1G21690 563 / 0.0 replication factor C 4, embryo defective 1968, ATPase family associated with various cellular activities (AAA) Lus10003049 [exp] 49 / 8e-06 AT3G02450 685 / 0.0 cell division protein ftsH, putative (.1) Lus10034097 [exp] 49 / 8e-06 AT3G02450 713 / 0.0 cell division protein ftsH, putative (.1) Lus10033035 [exp] 47 / 6e-05 AT4G24790 687 / 0.0 AAA-type ATPase family protein (.1.2) Lus10012277 [exp] 45 / 0.0001 AT1G50250 935 / 0.0 FTSH protease 1 (.1) Lus10013665 [exp] 45 / 0.0001 AT4G24790 702 / 0.0 AAA-type ATPase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00004 [poplar] [flax] AAA ATPase family associated with various cellular activities (AAA) CL0604 [poplar] [flax] post-AAA PF12002 [poplar] [flax] MgsA_C MgsA AAA+ ATPase C terminal CL0671 [poplar] [flax] AAA_lid PF16193 [poplar] [flax] AAA_assoc_2 AAA C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.011G023800.1 pacid=42781191 polypeptide=Potri.011G023750.1.p locus=Potri.011G023800 ID=Potri.011G023800.1.v4.1 annot-version=v4.1 ATGGAGATGGAGCAGCTACTGAGCATGGGTTTTCCTAGTGAATTGGCGGCTCAAGCTCTGGCCGCCACCGGTGGCAAATCAACAGTGAAAGCCACCGAGT GGATTCTCTCCCAAACATCTCATCCTCATCCCAATAATAGCCCAAATGGATCATCATTCCAGCAGCCAAAACTAGACCGCTTCTTTCATTTCCCATCATC AAAACCAAAACAAGAACCCTCCTCCCCCTCCAATTCCCCCACCCAAACAACCACCGCACCACCACCACCACCACCTCATCATCAAGTACTATCAGCCCAA ACTCCTCCCCCTTCTAAACGTCCCAAAGTATTCGCTCCATCACCCCCCTCAAATCCACATAATCATACTATCAGCAATGATGAGCCCTTGGCCGAACGCA TGCGGCCTCGCACCATTGATGATGTTATCGGCCAGGACCTCCTTCTTTCCCAAAACTCCCTCCTCCGCTCTGCTATTCGTTGCAGCCGCATCCCTTCTAT CATCCTCTGGGGCCCACCTGGAACTGGTAAGACATCCATTGCTCGTGCCATTGTCACTTCTGCTAACTCTCAGGGCTCTTCCTCCTACCGTTTTGTCTCT TTGTCTGCTGTTACTTGTGGGGTTAAGGATGTTAGGGATGCTTTTGAGGATGCTAGGAAATTTAAACTCAAGAATAGTAAAAGGACTGTTCTTTTTCTAG ATGAGGTTCATAGGTTTAACAAGTCCCAGCAGGATTCTTTCTTGCCTGTTATTGAAGACGGTACCATTGTGTTTATTGGGGCCACTACTGAGAATCCTTC TTTTCATTTGGTTACGCCATTGCTTTCTCGCTGTAGGGTTCTCACGCTTAGCCCTTTAAAGCCTCACCATGTTCAAACCATTTTGAAGCGCGCGGTGAAT GATCCTGACAAGGGATTGTCCAAGAGCTTAGGGAGTTTGAGAGTTGATGTGAGTGAGGACGCTGTTGAATTTTTATCCACGAATTGCGATGGTGATGCAC GTGTGGCGTTGAATGCCTTGGAAATTTCTGCTGTAGCTGCAGCTGCCCGAGTGGGAAGTGATGGTGATTTGAGGTTGGCCAGTGTTGCATTGGATGATGC CAAGGAGGCGCTTCAGAGCAAGCATCTTGCTTATGATAGAGCAGGGGAAGAGCATTACAATCTCATCAGTGCACTTCACAAGTCTATGAGAGGAAGTGAT GCAGATGCATCCATTTATTGGTTGGTGAGGATGTTGGAAGGAGGCGAACAGCCTCTTTATATTGCGAGGCGTTTGGTAAGGTTTGCAAGTGAGGATGTTG GCTTGGCTGATCCTTTAGCACTTAACCAGGCTGTTGCTTGCTACCAAGCTTGCCATTTCTTGGGCATGCCTGAGTGCAATGTGATTCTTGCTCAGTGTGT AGCTTACTTGGCTTTGGCTCCAAAATCCATTTCTGTCTATCGAGCAATGGGGGCTGCACAGAAGGTTGTTAGAGAATCTGTTGGACAAAACGAGGGAGTG CCGCTTCATTTGAGAAACGCGCCTACCAAGTTGATGAAAGAGCTTGGGTATGGGAAGGACTATATCTACACTCCTGATAACCCCACCGCAAACCAGAGCT TTTTACCACCTTCACTCCAGGGCTACAAGTTCCTTGATTGGCCAGCCAGTAATGCCAATAATGGATAA
AA sequence Show only first row Show all	>Potri.011G023800.1 pacid=42781191 polypeptide=Potri.011G023750.1.p locus=Potri.011G023800 ID=Potri.011G023800.1.v4.1 annot-version=v4.1 MEMEQLLSMGFPSELAAQALAATGGKSTVKATEWILSQTSHPHPNNSPNGSSFQQPKLDRFFHFPSSKPKQEPSSPSNSPTQTTTAPPPPPPHHQVLSAQ TPPPSKRPKVFAPSPPSNPHNHTISNDEPLAERMRPRTIDDVIGQDLLLSQNSLLRSAIRCSRIPSIILWGPPGTGKTSIARAIVTSANSQGSSSYRFVS LSAVTCGVKDVRDAFEDARKFKLKNSKRTVLFLDEVHRFNKSQQDSFLPVIEDGTIVFIGATTENPSFHLVTPLLSRCRVLTLSPLKPHHVQTILKRAVN DPDKGLSKSLGSLRVDVSEDAVEFLSTNCDGDARVALNALEISAVAAAARVGSDGDLRLASVALDDAKEALQSKHLAYDRAGEEHYNLISALHKSMRGSD ADASIYWLVRMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVACYQACHFLGMPECNVILAQCVAYLALAPKSISVYRAMGAAQKVVRESVGQNEGV PLHLRNAPTKLMKELGYGKDYIYTPDNPTANQSFLPPSLQGYKFLDWPASNANNG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G24290			AAA-type ATPase family protein...		Potri.011G023800 [exp]	0	1
AT3G56030			Tetratricopeptide repeat (TPR)...		Potri.008G141700 [exp]	2.00	0.8554
AT3G52210			S-adenosyl-L-methionine-depend...		Potri.010G233100 [exp]	3.46	0.8460
					Potri.016G098150 [exp]	7.74	0.8157
AT3G21090		ABCG15	ATP-binding cassette G15, ABC-...		Potri.006G049000 [exp]	12.04	0.8366
AT5G09995			unknown protein		Potri.007G081800 [exp]	12.12	0.8300
AT4G17950	AT-hook		AT hook motif DNA-binding fami...		Potri.003G090900 [exp]	14.24	0.8024
AT5G15700			DNA/RNA polymerases superfamil...		Potri.004G111600 [exp]	14.69	0.8314
AT2G01080			Late embryogenesis abundant (L...		Potri.003G021934 [exp]	16.34	0.7513
AT3G62330			Zinc knuckle (CCHC-type) famil...		Potri.014G118100 [exp]	21.90	0.8250
AT1G09820			Pentatricopeptide repeat (PPR-...		Potri.005G014500 [exp]	21.90	0.8268

Compare expression of checked genes

Potri.011G023800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.