Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38620 164 / 3e-49 MYB AtMYB4 myb domain protein 4 (.1) AT3G23250 159 / 3e-47 MYB ATMYB15, ATY19 myb domain protein 15 (.1.2) AT4G21440 160 / 8e-47 MYB ATMYB102, ATM4 A. THALIANA MYB 4, MYB-like 102 (.1) AT2G31180 156 / 1e-46 MYB ATMYB14, Myb14at ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 14, myb domain protein 14 (.1) AT4G05100 157 / 3e-46 MYB ATMYB74 myb domain protein 74 (.1) AT3G02940 155 / 2e-45 MYB ATMYB107 myb domain protein 107 (.1) AT5G15310 155 / 4e-45 MYB ATMYB16, ATMIXTA myb domain protein 16 (.1.2) AT5G10280 155 / 4e-45 MYB ATMYB92, AtMYB64 myb domain protein 92 (.1) AT4G28110 152 / 8e-45 MYB ATMYB41 myb domain protein 41 (.1) AT2G16720 151 / 2e-44 MYB AtY49, AtMYB7 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 7, myb domain protein 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G040200 [exp] 431 / 3e-154 AT3G23250 171 / 1e-51 myb domain protein 15 (.1.2) Potri.011G040400 [exp] 328 / 2e-113 AT2G31180 163 / 6e-49 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 14, myb domain protein 14 (.1) Potri.004G026600 [exp] 276 / 2e-93 AT4G05100 176 / 1e-53 myb domain protein 74 (.1) Potri.019G018200 [exp] 160 / 2e-48 AT2G31180 223 / 1e-73 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 14, myb domain protein 14 (.1) Potri.019G118200 [exp] 164 / 3e-48 AT4G05100 278 / 7e-92 myb domain protein 74 (.1) Potri.005G224100 [exp] 161 / 4e-48 AT3G23250 255 / 1e-84 myb domain protein 15 (.1.2) Potri.011G041600 [exp] 163 / 6e-48 AT4G21440 311 / 2e-104 A. THALIANA MYB 4, MYB-like 102 (.1) Potri.008G166700 [exp] 161 / 6e-48 AT3G23250 237 / 2e-77 myb domain protein 15 (.1.2) Potri.004G033100 [exp] 162 / 1e-47 AT4G21440 293 / 4e-97 A. THALIANA MYB 4, MYB-like 102 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039743 [exp] 159 / 1e-47 AT4G21440 296 / 2e-100 A. THALIANA MYB 4, MYB-like 102 (.1) Lus10041145 [exp] 157 / 5e-47 AT3G23250 237 / 3e-78 myb domain protein 15 (.1.2) Lus10011820 [exp] 155 / 4e-46 AT3G23250 225 / 2e-73 myb domain protein 15 (.1.2) Lus10039734 [exp] 153 / 6e-46 AT5G65230 183 / 2e-57 myb domain protein 53 (.1) Lus10021185 [exp] 154 / 8e-46 AT3G23250 231 / 1e-75 myb domain protein 15 (.1.2) Lus10018547 [exp] 153 / 4e-45 AT4G21440 179 / 2e-54 A. THALIANA MYB 4, MYB-like 102 (.1) Lus10021871 [exp] 152 / 4e-45 AT3G23250 233 / 9e-77 myb domain protein 15 (.1.2) Lus10003557 [exp] 153 / 7e-45 AT3G23250 239 / 4e-78 myb domain protein 15 (.1.2) Lus10006740 [exp] 156 / 1e-44 AT4G21440 317 / 6e-106 A. THALIANA MYB 4, MYB-like 102 (.1) Lus10019085 [exp] 154 / 2e-44 AT5G07700 239 / 3e-76 myb domain protein 76 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00249 [poplar] [flax] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.011G040300.1 pacid=42781879 polypeptide=Potri.011G040300.1.p locus=Potri.011G040300 ID=Potri.011G040300.1.v4.1 annot-version=v4.1 ATGAGGAGTATTTCGCAGAAGTATCAGAATTTGTTTTTGAAAAGAGGGACATGGGATCCTGATGAAGATCAAAAGTTGAGAGCTTATATTAAGAGACATA GCATTTGGAATTGGAATGAGATGCCGAGAGCTGCTGGTTTGTTAAGGTCAGGGAAGAGTTGCAGGCTTCGTTGGATGAACTATCTAAGGCCAGATATTAA GCGTGGAAGCTTCAGCAAGGAAGAGGTGCAAACTATAATCAAGCTGCAAGAAATGTTAGGAAATAGATGGTCTACAATTGCAGCAAAGTTGCCTGGAAGA ACCGATAATGATATCAAAAATTTCTGGAACACCCACGTGAGGAACCGCTTCAACAACAATATTAGTAATACTACAGTGCAAGCACCTAAACTTCAAGAAA TACAGACATCCGAAGAAGAATTCAAGCAAAGGAAATCATCTGCCATTGATGTTTCACTTCCCACTGCTCCAAAAATATTGAATTCAGAAGAGTACTCCTC CAAGGGGACGCTCCCCATGTTACCAATTCTGTGTTCTGATAATTTCTCATCTTCCAGTTCCAGTCCTGTGAATGACATCAATGAAAACATGCGCATGGAG GAGAATGATGGATCATTTGAATCATTTGCAGAACTAAGTTTGTTGGATCAGCCACTTTCTATGGAAGCTCAAAAGTGCAACGCGGAGGATTATGGAGAAG CATATACAGATGAAATGTGGGTACAAGAATTGTTGAACTATCCAAATGCTTCCCACAATTTTGATGTTGGCCAAGAGTTTTGGATGAATTGCTTGATGCA AGCACAACTGCATGGAAATTAA
AA sequence Show only first row Show all	>Potri.011G040300.1 pacid=42781879 polypeptide=Potri.011G040300.1.p locus=Potri.011G040300 ID=Potri.011G040300.1.v4.1 annot-version=v4.1 MRSISQKYQNLFLKRGTWDPDEDQKLRAYIKRHSIWNWNEMPRAAGLLRSGKSCRLRWMNYLRPDIKRGSFSKEEVQTIIKLQEMLGNRWSTIAAKLPGR TDNDIKNFWNTHVRNRFNNNISNTTVQAPKLQEIQTSEEEFKQRKSSAIDVSLPTAPKILNSEEYSSKGTLPMLPILCSDNFSSSSSSPVNDINENMRME ENDGSFESFAELSLLDQPLSMEAQKCNAEDYGEAYTDEMWVQELLNYPNASHNFDVGQEFWMNCLMQAQLHGN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G38620	MYB	AtMYB4	myb domain protein 4 (.1)		Potri.011G040300 [exp]	0	1
AT1G56600		ATGOLS2	galactinol synthase 2 (.1)		Potri.005G006800 [exp]	1.00	0.9889
					Potri.017G080900 [exp]	2.00	0.9783
					Potri.015G020450 [exp]	2.00	0.9583
AT5G02070			Protein kinase family protein ...		Potri.005G021300 [exp]	5.65	0.9468
AT3G48980			Arabidopsis thaliana protein o...		Potri.001G106500 [exp]	6.78	0.8549
AT1G79800		AtENODL7	early nodulin-like protein 7 (...		Potri.001G187700 [exp]	8.36	0.9427
AT4G03540			Uncharacterised protein family...		Potri.004G043300 [exp]	8.66	0.9544
AT3G22600			Bifunctional inhibitor/lipid-t...		Potri.010G085400 [exp]	8.77	0.9372
AT2G48140		EDA4	embryo sac development arrest ...		Potri.008G155200 [exp]	8.94	0.9191
AT2G42560			late embryogenesis abundant do...		Potri.019G090300 [exp]	9.53	0.9493

Compare expression of checked genes

Potri.011G040300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.